Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0242900 |
| Transcript ID | LotjaGi1g1v0242900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT1G34670.1 myb domain protein 93; Swiss-Prot: sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39; TrEMBL-Plants: tr|Q84PP4|Q84PP4_LOTJA Transcription factor MYB102; Found in the gene: LotjaGi1g1v0242900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:58244571..58246516) extracted from Lotus japonicus Gifu genome v1.2.
CAAGAAGCAACCAAGAAGAATGGATATATAAATAGTATGACCCCAGCCCCCTGTATAATTGGAGGAGGTAAAAGAGGAAA ACATAATAACAGCTTTGGATCAAGTGAGTAATTAAGTGACACACACAATGGGAAGGTCTCCATGCTGTGATGAAAATGGC CTTAAGAAAGGACCATGGACTCCTGAAGAAGATCAAAAGCTAGTAGAACACATTCAGAAACATGGCCATGGAAGTTGGAG AGCTCTCCCTAAGCTAGCAGGTATGTGCGCGCATCTGCTGTTTTTCATAGCAATTATTGAGTTTTTCTCATTTCAATGGT GCTCATTATTCATCTCTCTTTGTAACTTGCAATTAATTCGTAGGTCTTAACAGATGTGGAAAAAGTTGTAGGCTAAGGTG GACCAATTACTTAAGGCCTGACATCAAGAGGGGGAAATTTTCTCCAGAAGAGGAGCAAACAATTCTGCATCTCCATTCCA TCCTTGGAAACAAGTACTTTCCATGCCATATCTCCTTTATAATTATTTGAACCTTTTGATAACCGTCTAGGCCTTTTCTT TTGTGGACGATGGACCCAGAAAGTTTTAGTTCACAAATTGCACAGACTTTTCTGTAATTTATTTTAACACATACAAGAGC ATATATGTCTTTGGCTTATCAAAAATAAAAATGACATATTATAACAAGTAAAACATGATTTATGTATAGACCAGTTTTTA AGTACATGTTACTCCTTTTTTGTTTTTATGTGTTCTTTAAGGCTTTGCCTGAAAAATATGGTTCAAAATTAAAGCTAATT AAAAGGGCTACTCTACAAATTAATTTTATCACATGAAGAGTATAATTGTAAATAATATGTACTAAATTTTTTAAAAACAT AATTCATAGAAGTACAGGTTTTTAACATGGTCCAGTGTAGAATTTAGTGTTGTCTTCAACTCTTATTATTACTTACTTTG ATTGCACCTACTTTCTTAACAGATGGTCAGCAATTGCAACACACCTTCCGGGAAGAACTGACAATGAGATCAAGAATTTT TGGAACACTCATTTAAAGAAAAAGCTGATTCAGATGGGTTTTGATCCAATGACTCACCAGCCAAGAACTGACCTTGTTTC CACCTTGCCATATCTGCTAGCTCTGGCCAACATGACACAACTCATGGATCATAATCATCAGTCATTTGATGAACAGGCAG TTCAGCTGGCAAAGCTTCAATACCTTAATTACTTACTCCAATCCTCAAACAATCCCTTATGCATGACCAACTCCTATGAT CAAAATGCCCTCACAAACATGGAAGCTTTCAGTTTGTTAAACTCAATCTCTAATGTAAAAGAGAACCTTGGTGTGGACTT CTCACAAATGGATACCCAAACCTCATTATTTTCACATGATGGGAATAATATGGCTAGCTCCCAACCACTCCACCACCCAA GCAACATGCTACCTCACTTTCTAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAATAATGAGCAGGGTCAA GGTACTAATAACTTTGCAATAAGTCAAAGGGATCACACTGGTGATGAATCTTCCTGGATAAATATTCCATCTATTAATCC TCCAAATGCAATAGGGACCTCAGGAGATGCCAGTAGCAGCACTTCTAGCTATGGAGGAGCAGGACCCTCACCTTACAATT GGTCTGAATTGTTTTTTGAGGACCCCACTACTATGCATGAGCTATCTTAGTATTTAATTTGAAAGAGGTTGAATATGGTG TGTATTTATATGCCTTCATCAGATTATTGTATGCTTCTTTCCAATTAATATACAAATATATAGGCTCTACTATAGATATG TCATGTATGTCCATTTACACATACGTATATGTTGATATATGTTTTGTACACACAACTTCTGGACAGTGTCATTGAATGAG AAGTTTTTTCTTTAATTTTGTTTGTA
CDS sequence (LotjaGi1g1v0242900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGTCTCCATGCTGTGATGAAAATGGCCTTAAGAAAGGACCATGGACTCCTGAAGAAGATCAAAAGCTAGTAGA ACACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTCCCTAAGCTAGCAGGTCTTAACAGATGTGGAAAAAGTTGTA GGCTAAGGTGGACCAATTACTTAAGGCCTGACATCAAGAGGGGGAAATTTTCTCCAGAAGAGGAGCAAACAATTCTGCAT CTCCATTCCATCCTTGGAAACAAATGGTCAGCAATTGCAACACACCTTCCGGGAAGAACTGACAATGAGATCAAGAATTT TTGGAACACTCATTTAAAGAAAAAGCTGATTCAGATGGGTTTTGATCCAATGACTCACCAGCCAAGAACTGACCTTGTTT CCACCTTGCCATATCTGCTAGCTCTGGCCAACATGACACAACTCATGGATCATAATCATCAGTCATTTGATGAACAGGCA GTTCAGCTGGCAAAGCTTCAATACCTTAATTACTTACTCCAATCCTCAAACAATCCCTTATGCATGACCAACTCCTATGA TCAAAATGCCCTCACAAACATGGAAGCTTTCAGTTTGTTAAACTCAATCTCTAATGTAAAAGAGAACCTTGGTGTGGACT TCTCACAAATGGATACCCAAACCTCATTATTTTCACATGATGGGAATAATATGGCTAGCTCCCAACCACTCCACCACCCA AGCAACATGCTACCTCACTTTCTAGACCCACAAGTCTCTTTCAGTTCTCAATCATGTTTGAATAATAATGAGCAGGGTCA AGGTACTAATAACTTTGCAATAAGTCAAAGGGATCACACTGGTGATGAATCTTCCTGGATAAATATTCCATCTATTAATC CTCCAAATGCAATAGGGACCTCAGGAGATGCCAGTAGCAGCACTTCTAGCTATGGAGGAGCAGGACCCTCACCTTACAAT TGGTCTGAATTGTTTTTTGAGGACCCCACTACTATGCATGAGCTATCTTAG
Protein sequence (LotjaGi1g1v0242900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSPCCDENGLKKGPWTPEEDQKLVEHIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSPEEEQTILH LHSILGNKWSAIATHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMTQLMDHNHQSFDEQA VQLAKLQYLNYLLQSSNNPLCMTNSYDQNALTNMEAFSLLNSISNVKENLGVDFSQMDTQTSLFSHDGNNMASSQPLHHP SNMLPHFLDPQVSFSSQSCLNNNEQGQGTNNFAISQRDHTGDESSWINIPSINPPNAIGTSGDASSSTSSYGGAGPSPYN WSELFFEDPTTMHELS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 257 | 257 | 5.6E-103 | ||
| PANTHER | 1 | 257 | 257 | 5.6E-103 | – | |
| ProSiteProfiles | 9 | 61 | 53 | 18.751 | ||
| Gene3D | 11 | 67 | 57 | 6.7E-21 | – | |
| SUPERFAMILY | 11 | 108 | 98 | 1.8E-32 | ||
| SMART | 13 | 63 | 51 | 5.6E-16 | ||
| Pfam | 14 | 61 | 48 | 4.5E-17 | ||
| CDD | 16 | 61 | 46 | 2.03987E-13 | ||
| ProSiteProfiles | 62 | 116 | 55 | 27.474 | ||
| SMART | 66 | 114 | 49 | 6.4E-17 | ||
| Pfam | 67 | 112 | 46 | 1.3E-15 | ||
| CDD | 69 | 112 | 44 | 3.19084E-13 | ||
| Gene3D | 69 | 116 | 48 | 4.0E-21 | – | |
| MobiDBLite | 261 | 314 | 54 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0242900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…