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LotjaGi1g1v0244600.5

Overview

Field Value
Gene ID LotjaGi1g1v0244600
Transcript ID LotjaGi1g1v0244600.5
Related isoforms 7
Lotus japonicus genome version Gifu v1.2
Description Transducin/WD40 repeat protein; TAIR: AT1G78070.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9Y7K5|YGI3_SCHPO Uncharacterized WD repeat-containing protein C2A9.03; TrEMBL-Plants: tr|A0A0L9UG10|A0A0L9UG10_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0244600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:58728128..58729529) extracted from Lotus japonicus Gifu genome v1.2.

ATTATTACTATTATCTTCATTATGTTTCTTTCCTGTGCAGCTGAGGAATTTGTTGTGGGCAACATCAAAGCATGATGTGT ACCTTATGCAGAACTATTCAGTGATGCATTGGTCCTCACTACTCCGAAAGGGTAAAGAAGTGCTTAACGTAGCCAAACCA ATTATTCCGAACCTTGTACGTATCCATTTAGTTGATAAAATCTGCTTCTTTTGTATTCAATTGCATTGGATCTAAGTGTT CTGATATTATTTTGCAGAAGCGTACTGGCTTTTTAGCTCAACCTGTCTCCAGAGTGCAAGTAAGCACCATGGCTGTTAAG GAAAATCTGATGGTGGCAGGTGGTTTCCATGGGGAGGTTATTTGTAAGGTAGGGTAAATCATGATTTCTTGCAATTGAAT AATCAACTATATGAAGGGCCCTTGTTTAATGCACGGATTATTTGTGTACCAGAATTTGAATCAGTCTGGAGTTGCATTCT GCAGTAAAATAACTACAGATGACAATGCCATCACCAATGCTGTGGATGTTTTCCGCAATCCTGGGTAAGCATCTAAATGC AGAATCTTTGAATTTGAAATTTTTGCTTTGGTTTGATTTGTAACCGAACCTTCACTTTGCAGTGGATCATTGAGGGTCAT CGCAGCAAATAATGACTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGTTTGGT CTGTCAACGTGAGTGTCATCAACTGATATTCCTATTACTAACTTCATCTCTAGGAACAGTATGCAAGTAACCATTATGTT TACATTTGCAGAATATTTCTGCTAGTCCGGACGGCAAGTCGTTAGCTGTTCTTGGGGACAGTACCGAGTGTTTGATAGCT GATGTTAATACCGGGAAGGTATGTTTAACTTGCAGTTGTATTTTAGGTGTTATTATCCCTAATTTTTTGTTTAATATCTG ATTTTATGCATTTTACGGTGTCGCGTAGGTTACTGGGAGCCTAAAAGGACACTTGGACTATTCTTTTGCATCTGCTTGGC ACCCAAATGGACAAATATTGGCCACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATTAGAAATCTTTCACAGTCC ATGGCGGTGCTCAAGGGAAGAATGGGTGCAATAAGGGCCTTAAGGTTCACATCTGATGGAAGGTTTTTGGCCATGGCTGA ACCAGCTGACTTCATCCATGTTTTTGACTCACATTCTGGATATGAGCAATGTCAAGAGATAGATATATTTGGTGAGATTG CTGGAGTATCGTTTAGCCCGGACACAGAGGCTCTGTTTGTTGGTGTTGCTGACCGAACCTACGGTAGCTTGTTAGAGTTC ACCAGAAATCGTAATCATCATTATGTAGATACCATGTTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0244600.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCAGAACTATTCAGTGATGCATTGGTCCTCACTACTCCGAAAGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATTAT TCCGAACCTTAAGCGTACTGGCTTTTTAGCTCAACCTGTCTCCAGAGTGCAAGTAAGCACCATGGCTGTTAAGGAAAATC TGATGGTGGCAGGTGGTTTCCATGGGGAGGTTATTTGTAAGAATTTGAATCAGTCTGGAGTTGCATTCTGCAGTAAAATA ACTACAGATGACAATGCCATCACCAATGCTGTGGATGTTTTCCGCAATCCTGGTGGATCATTGAGGGTCATCGCAGCAAA TAATGACTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGTTTGGTCTGTCAACA ATATTTCTGCTAGTCCGGACGGCAAGTCGTTAGCTGTTCTTGGGGACAGTACCGAGTGTTTGATAGCTGATGTTAATACC GGGAAGGTTACTGGGAGCCTAAAAGGACACTTGGACTATTCTTTTGCATCTGCTTGGCACCCAAATGGACAAATATTGGC CACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATTAGAAATCTTTCACAGTCCATGGCGGTGCTCAAGGGAAGAA TGGGTGCAATAAGGGCCTTAAGGTTCACATCTGATGGAAGGTTTTTGGCCATGGCTGAACCAGCTGACTTCATCCATGTT TTTGACTCACATTCTGGATATGAGCAATGTCAAGAGATAGATATATTTGGTGAGATTGCTGGAGTATCGTTTAGCCCGGA CACAGAGGCTCTGTTTGTTGGTGTTGCTGACCGAACCTACGGTAGCTTGTTAGAGTTCACCAGAAATCGTAATCATCATT ATGTAGATACCATGTTTTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0244600.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MQNYSVMHWSSLLRKGKEVLNVAKPIIPNLKRTGFLAQPVSRVQVSTMAVKENLMVAGGFHGEVICKNLNQSGVAFCSKI TTDDNAITNAVDVFRNPGGSLRVIAANNDSQVRVFDAENFASLGCFKYVWSVNNISASPDGKSLAVLGDSTECLIADVNT GKVTGSLKGHLDYSFASAWHPNGQILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFIHV FDSHSGYEQCQEIDIFGEIAGVSFSPDTEALFVGVADRTYGSLLEFTRNRNHHYVDTMF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43991:SF12
1 299 299 8.2E-179 –
PANTHER
PTHR43991
1 299 299 8.2E-179 –
Gene3D
G3DSA:2.130.10.10
37 293 257 1.4E-31
IPR015943
SUPERFAMILY
SSF50978
40 279 240 9.89E-35
IPR036322
SMART
SM00320
116 157 42 420.0
IPR001680
ProSiteProfiles
PS50294
125 251 127 15.821
IPR017986
SMART
SM00320
160 199 40 2.7E-7
IPR001680
Pfam
PF00400
162 199 38 1.1E-5
IPR001680
ProSiteProfiles
PS50082
167 208 42 13.884
IPR001680
ProSitePatterns
PS00678
186 200 15 -
IPR019775
SMART
SM00320
203 242 40 6.7
IPR001680

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0244600.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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