Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0254300 |
| Transcript ID | LotjaGi1g1v0254300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Oxysterol-binding protein; TAIR: AT4G08180.1 OSBP(oxysterol binding protein)-related protein 1C; Swiss-Prot: sp|Q8L751|ORP1C_ARATH Oxysterol-binding protein-related protein 1C; TrEMBL-Plants: tr|A0A151SU83|A0A151SU83_CAJCA Oxysterol-binding protein isogeny C2F12.05c; Found in the gene: LotjaGi1g1v0254300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:61225774..61230841) extracted from Lotus japonicus Gifu genome v1.2.
ATGCATCCTTTCTGCTGCGTCTCCGCCATATCCGACCAGGCCTCTCCGGTGAAACCCTCACCCCCTCCGTTCCCTGACTT CTCCACCATGCCTCCTCCTCCTCCACCGCCTCCTCCCGCCGCTGCCGTCGCTGTCAGATCCGATTCGGCTCCACGCCTCA GCCACTGCCGCAGTCACAGCGCTACTCAGTCCGTGACCATCAGCGAGCCCGGTCGCGTGAGCCAGCGGGAGCAGCAGCCG GTGGTGGTGGACGTGAAGATCAACGACCTCGTCGGGAACGGAATCTCCGGGATACTTCACAAGTGGGTCAACTACGGCAA GGGATGGCGACCGCGCTGGTTCGTTCTCCAAGACGGTGTTCTCTCCTACTATAAGATTCACGGACCTGATAAGATCGTCG TGAATCCAGAAACCGAGAAAGGCTCCAAGGTTATCGGCGAAGAATCCATGCGGAGGATCACTCGCAACCGCAATTCTTCC TTTCCGTATCAACTCCGGCGAAAACCGTTTGGTGAAATCCATCTCAAGGTTTCTAAATTCTTGTCCAATTTTAGCTTAAT TGAATCAATCTCTTATTGACTTTTGTTTTCGTGTAGAATTGGAATTGGAATTTGAATTTGAATTTGAATTTGATTTGATT CGTGTGTGTAGGTTTCAACGATTCGCGAGAGCAAATCGGATGAGAAGCGGTTTTCGGTGTTCACCGGAACGAAGAGGCTC CATTTGCGGGCGGAGACGCGGGAGGATCGGGTGGCGTGGGTGGAGGCGTTGCAGGCGGTGAAGGACATGTTCCCTCGGAT TTCGAACAGTGAGTTGATGGCTCCGGTGGACAACGTGGCCATTTCAACTGAGAAGTTGAGACTTCGGCTTCTGGAAGAAG GGGTGAGTGATGCAGCCATTCAGGACAGTGAGCAAATAATGAGGACTGAGTTTGCGGCGTTACAGAACCAACTCGTGCTG CTTAAGCAGAAGCAGTCGATCCTAATTGACACCATGCGGAATTTAGAGGTACTTCTTCTGAGATTGTATATGACAAGTTT GCTTTTTACAGCTGAAAATCAAAATGTTAATGGCTTCTCTGTGGTTTTGGATAAAGATATGTTCACACTTTATTTCCTCT CACATGAAAAGTGATATAGGAATAGAAGAGAGAGAAATGATAGATATAATGTGTGATCTTACCGAAAAAAGAAGAGATAG ATAGAAAGAAAAGTGAGCGGTCAGAATGAATCAAAACTATCTCTGCTTTTAAATTTCATTTGAGAGAAGTGCAATTGTAA GTTGTAATAGTGACATTTAGTCAATCTCTCCCCTTTGTATTCTGTGCACACAATCCATTCTGTGGCTTGTTTTTGGATTA TCGGAATCTATGGTTAGCTTACTGATAAAAAAAACCTCAATACTGTTAAGGAGGAAGTTATGGGTTAATGGTTTGTTGTT GTGAAGTCTTTAAGCTTCTTTAGTCTTGTAACTTTTTGTTGAACTGTTCAACTGCACTTTGAGTACAGTTTCTCTTTTCC TGGCAGTCAATAATATGAAAATCTGGATATCGTTACTCATGGATGCATAATGTGAATAATAATAATGGTAATATTATTAT TATTATTAATTTGTTCCAATTAGACCCATTGAATCCTGCTTTGATGATAAGGTTGTGGCATTGATTTAATTTCACTGAAT TACCCAACAGTTTCGTGGTTTCCACCTTGTTTGCAAAATGTTTTCTTTTGTCTGTGGGCAGTTTTTATTTTTTTTCCACG ATGCTTTCTCTTGTGTTTAACGTATTAAGGATAAAGATTTGTTTTCTGTATTAATTAACTTGCATTTGTATTACATTATT GTAGACAGAAAAGGTTGATCTGGAGAATACAGTCGTTGATGAGAGCCAGAGACAGTTGAATGATCAAGAGGCTTCCTATG AATTAACACCAGAAAAATTTAGTGGTAAGCTTATTTAATTGTGATTATTAGGCATTAGTGCTCCCCATTCTCAACAGTAA GTCTTGTCTCTGGTTAGTTTTTATGGCCTTCTTCTATGTTGGCAAATGATTAAAACTTGATAGTGAGACATTTCTGCATT AGCAATAGAGGAGTAATGTAGACGTTTTATTGATCTCGTGATGCATTTTCTTGAACTTGAAGTATTTATGCTTCACTGTC TCAGATACACTGATCCCCCTTCCGTTCCAATGTTTTTTCCTTAACTCCTTACATCTCTCTTTCTCTACATGTTAAATTCA AATAGTTTGTAATGCTTACTACTCATTCCTACTAACCAATTGTTTTAATCTAGTTGTGATTTTCACAATTATTTATTTCA TTTAATTTCAGAAGGAAGCGGGAGTGAATCTGAGGACGATAATGAGAGAAATGATGCTGCAGATGACGAAACAGATGATG ACAATGTCTTCTTTGATACTCGTGATATTCTGTCAACCAGTTCTTTCAAAAGTAACGGGTCTGATCATAGAGTATCATCT TTCTCTTCAGATAATGAAGGGTTCTATGCATTTGAGTCCGAGGAGGATGTAGATCCTTCAATTAGAAATGTCGGAACCAA CCACCCTTATGTTAAGCGGCGTAGAAAATTGCCAGACCCAGTAGAGAAAGAGAAAGGTGTAAGTCTTTGGTCAATGATCA AGGATAATATAGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAATGAGCCTCTCTCCTCGTTGCAAAAGTGT TTTGAAGAATTGGAATATTCATATCTGCTGGACCAAGCATATGAATGGGGAAGAAGGGTAAGTGTGAATTTGGCTGATAG CTCTATAATAAGTGAAATCTGAGCGCTTTAATATAATAATTTCATTTGATATGAGAAAATTGTCGCACTATTGTTAACTG TTTGTGCTGTTGGCTCTTTCAATGCAGTCTTGAGTGTGTTCTTTCCATTTTTAACTAAATGGATATGCCATGCAGGGTAA TAGTCTCATGAGGATTCTCTACGTTGCTGCTTTTGCTATATCTGCTTATGCGTCGACAGAAGGAAGAGCTTGCAAACCAT TTAATCCATTACTTGGGGAAACATACGAGGCTAACTATCCAGATAAAGGCCTTCGATTTTTCTCAGAGAAGGTATATAAT CTCACCCTATAAGGATATTGTCAAAATATTACCTTTTTCAACCCAATCAAATCACAATAATATTTTCTTTCTGTTTTCAC CATAATTTATATATCTGTCAAAGGTTTCTTTCAAAATTCTAGCTTGGAGGAAAGTTATTTGAGTCATTTATCTGATGAAA ATTGTATGCAATATCATCAATACTCACACTTTTGAATTCCTTCCAAGCACTTGTTTTTGTTTGAAAGGAACAGCGTTCCT GATATGGAGAACCAAAACTTTAGAAACTACACAACTTATTTAATGAATAAAAGGTTTAATTGCTTGCATTAGTTCCATAC ATCCCTATGAACATAGTACAGTTTGGATTTGGATGCGAACAAGGACCTATCTATGTTGCCTATCTGAAATTTTTAATATT TCTGCTACCACTCAGGTCAGTCATCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGATGGAAATTTTGGGGCGA TAGCAACTTAAAGAGCAAGTTTTGGGGCCGATCAATTCAGCTTGACCCTGTTGGTTTTTTGACTTTGGAATTTGATGATG GGGAAGTTTTCCAGTGGAGCAAGGTATATTTTAACTGCTTCAACTGCTATGTTGTTCTGGTTTGGTTTTAAACTGAAGTG GACTTGTTCTTTCAGGTCACTACGTCAATATACAATCTCATACTGGGAAAGCTTTACTGTGATCACTATGGTACGATGCG CATACAGGGAAACCAAGAGTACTCGTGTAAACTGAAATTCAAAGAACAATCTATAATTGATCGAAATCCTCATCAGGTGC TTTATATCTGTTGCTTGGGTTCTATTTTTTCAGATATAATATATGAATTTTGTTGCAGAGGTTTCTTCCTTCTTACTGTG GATTTAATTGCCCTTTTAGGTTCATGGTATCGTTGAAGATAGGAATGGAAAAACCGTATCAACTTTGTTTGGAAAATGGG ATGAAAGCATGCATTATGTTAATGGAGACTACACTGGGAAGGGGAAAGGTCCTGAATCTTTGTCAGATGCCCGTTTACTC TGGAAGCGAAGCAAGCCTCCCACATTTCCTACTAGATATAACTTCACTCGCTTTGCCATCACATTAAATGAACTTACCCC TGGATTGAAGGTCTGTTTTATTATTAACTGATACTGTCTTTTTTATTGCAGCTCTATTTCTCATTTTTTAAGGAAAGAAT ATTCCAGGAAAAGAATTGCATTTTCTACTGCAATTTGGGCTTACTTAAGCATGCTTTAAATGAAGTTGACTTGGTTCTAT TGATAATAAAGGAAAATGGAAATTGTGCAACATTGATGAAGCATAAAAATATTGATAATTTGACCATATCAAGAAAAGCC AAATTGTGCAACAAACCTGTCATCTTACTGTGCATATTATTTTCTGTGTGCACACATGGTGTTTGCTGTGTTTTTTGCAT TTTGCTGAACATTCATTACCAATTTAATTTGTGAATACACAGGAGAAGTTGCCACCTACAGATTCCAGGCTAAGACCAGA CCAAAGGTATTTGGAAAATGGGGAGTATGAGATGGCAAATTCAGAAAAGTTGCGACTAGAGCAGCGGCAACGCCAGGTAC CTATTACATTTTATGTTCTCTAATTTTCTCTTTCATGGTTTCACCTTTAGCTCAGTACTTCAATAGACCTGAGAAGGTTT TATGCTAACTGGGTTTCATGTCATATCCTTATTTGCTAAGTTTAATTAGTTCCCGGTAGTGATTGATTTGAGTTCACTTC AGGCGCGAAAGATGCAAGAGAGTGGTTGGAAACCACGGTGGTTTGTGAAGGATAAAGCGAGCGGGACATACCGCTATTTA GGAGGGTATTGGGAGGCCAGAGATGAAGGAAAATGGGATTCCTGTCCTGACATCTTCGGCCAAATCCCTTCGGATCATCT TCCCAACGAAGGTCAAATTACATCTTAG
CDS sequence (LotjaGi1g1v0254300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGGAGGATCACTCGCAACCGCAATTCTTCCTTTCCGTATCAACTCCGGCGAAAACCGTTTGGTGAAATCCATCTCAA GGTTTCAACGATTCGCGAGAGCAAATCGGATGAGAAGCGGTTTTCGGTGTTCACCGGAACGAAGAGGCTCCATTTGCGGG CGGAGACGCGGGAGGATCGGGTGGCGTGGGTGGAGGCGTTGCAGGCGGTGAAGGACATGTTCCCTCGGATTTCGAACAGT GAGTTGATGGCTCCGGTGGACAACGTGGCCATTTCAACTGAGAAGTTGAGACTTCGGCTTCTGGAAGAAGGGGTGAGTGA TGCAGCCATTCAGGACAGTGAGCAAATAATGAGGACTGAGTTTGCGGCGTTACAGAACCAACTCGTGCTGCTTAAGCAGA AGCAGTCGATCCTAATTGACACCATGCGGAATTTAGAGACAGAAAAGGTTGATCTGGAGAATACAGTCGTTGATGAGAGC CAGAGACAGTTGAATGATCAAGAGGCTTCCTATGAATTAACACCAGAAAAATTTAGTGAAGGAAGCGGGAGTGAATCTGA GGACGATAATGAGAGAAATGATGCTGCAGATGACGAAACAGATGATGACAATGTCTTCTTTGATACTCGTGATATTCTGT CAACCAGTTCTTTCAAAAGTAACGGGTCTGATCATAGAGTATCATCTTTCTCTTCAGATAATGAAGGGTTCTATGCATTT GAGTCCGAGGAGGATGTAGATCCTTCAATTAGAAATGTCGGAACCAACCACCCTTATGTTAAGCGGCGTAGAAAATTGCC AGACCCAGTAGAGAAAGAGAAAGGTGTAAGTCTTTGGTCAATGATCAAGGATAATATAGGGAAGGATCTAACAAAAGTTT GCCTTCCTGTTTATTTTAATGAGCCTCTCTCCTCGTTGCAAAAGTGTTTTGAAGAATTGGAATATTCATATCTGCTGGAC CAAGCATATGAATGGGGAAGAAGGGGTAATAGTCTCATGAGGATTCTCTACGTTGCTGCTTTTGCTATATCTGCTTATGC GTCGACAGAAGGAAGAGCTTGCAAACCATTTAATCCATTACTTGGGGAAACATACGAGGCTAACTATCCAGATAAAGGCC TTCGATTTTTCTCAGAGAAGGTCAGTCATCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGATGGAAATTTTGG GGCGATAGCAACTTAAAGAGCAAGTTTTGGGGCCGATCAATTCAGCTTGACCCTGTTGGTTTTTTGACTTTGGAATTTGA TGATGGGGAAGTTTTCCAGTGGAGCAAGGTCACTACGTCAATATACAATCTCATACTGGGAAAGCTTTACTGTGATCACT ATGGTACGATGCGCATACAGGGAAACCAAGAGTACTCGTGTAAACTGAAATTCAAAGAACAATCTATAATTGATCGAAAT CCTCATCAGGTTCATGGTATCGTTGAAGATAGGAATGGAAAAACCGTATCAACTTTGTTTGGAAAATGGGATGAAAGCAT GCATTATGTTAATGGAGACTACACTGGGAAGGGGAAAGGTCCTGAATCTTTGTCAGATGCCCGTTTACTCTGGAAGCGAA GCAAGCCTCCCACATTTCCTACTAGATATAACTTCACTCGCTTTGCCATCACATTAAATGAACTTACCCCTGGATTGAAG GAGAAGTTGCCACCTACAGATTCCAGGCTAAGACCAGACCAAAGGTATTTGGAAAATGGGGAGTATGAGATGGCAAATTC AGAAAAGTTGCGACTAGAGCAGCGGCAACGCCAGGCGCGAAAGATGCAAGAGAGTGGTTGGAAACCACGGTGGTTTGTGA AGGATAAAGCGAGCGGGACATACCGCTATTTAGGAGGGTATTGGGAGGCCAGAGATGAAGGAAAATGGGATTCCTGTCCT GACATCTTCGGCCAAATCCCTTCGGATCATCTTCCCAACGAAGGTCAAATTACATCTTAG
Protein sequence (LotjaGi1g1v0254300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRRITRNRNSSFPYQLRRKPFGEIHLKVSTIRESKSDEKRFSVFTGTKRLHLRAETREDRVAWVEALQAVKDMFPRISNS ELMAPVDNVAISTEKLRLRLLEEGVSDAAIQDSEQIMRTEFAALQNQLVLLKQKQSILIDTMRNLETEKVDLENTVVDES QRQLNDQEASYELTPEKFSEGSGSESEDDNERNDAADDETDDDNVFFDTRDILSTSSFKSNGSDHRVSSFSSDNEGFYAF ESEEDVDPSIRNVGTNHPYVKRRRKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEELEYSYLLD QAYEWGRRGNSLMRILYVAAFAISAYASTEGRACKPFNPLLGETYEANYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFW GDSNLKSKFWGRSIQLDPVGFLTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQEYSCKLKFKEQSIIDRN PHQVHGIVEDRNGKTVSTLFGKWDESMHYVNGDYTGKGKGPESLSDARLLWKRSKPPTFPTRYNFTRFAITLNELTPGLK EKLPPTDSRLRPDQRYLENGEYEMANSEKLRLEQRQRQARKMQESGWKPRWFVKDKASGTYRYLGGYWEARDEGKWDSCP DIFGQIPSDHLPNEGQITS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 330 | 330 | - | – | |
| ProSiteProfiles | 1 | 72 | 72 | 8.171 | ||
| Gene3D | 8 | 74 | 67 | 7.7E-12 | ||
| PANTHER | 12 | 651 | 640 | 0.0 | – | |
| PANTHER | 12 | 651 | 640 | 0.0 | ||
| SUPERFAMILY | 17 | 76 | 60 | 1.7E-9 | – | |
| Coils | 142 | 162 | 21 | - | – | |
| MobiDBLite | 159 | 206 | 48 | - | – | |
| MobiDBLite | 159 | 180 | 22 | - | – | |
| MobiDBLite | 190 | 205 | 16 | - | – | |
| SUPERFAMILY | 272 | 651 | 380 | 6.41E-122 | ||
| Pfam | 277 | 629 | 353 | 6.8E-126 | ||
| Phobius | 331 | 349 | 19 | - | – | |
| Phobius | 350 | 659 | 310 | - | – | |
| Gene3D | 362 | 530 | 169 | 1.1E-25 | – | |
| Coils | 582 | 602 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0254300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…