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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0257900 |
| Transcript ID | LotjaGi1g1v0257900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT1G21910.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9SFE4|ERF12_ARATH Ethylene-responsive transcription factor ERF012; TrEMBL-Plants: tr|I3S908|I3S908_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0257900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:62425778..62427751) extracted from Lotus japonicus Gifu genome v1.2.
GCAAAAATGTCCTATACTGACCATTGAAGATTTGCAACCTTGAGACGCAAGCCTCAATTGGCTCTATCTATAAATAGTGG CTCTCTATTCCCCACATTCACACTGATTCTTTTCCCCACTTTCACAACAGCAACAAGTGAACACTCAAACACCCCAAAAC ACAATCACACAGAAAAAAACACCTAGTGTAACAACCTCCTCTTGAACACAATTTTTTGTTCTTCCTCAGAGAACTTTCAT CAAACAGCTTCTGTTCATTGAAGAACTATATCTTTGTTTGCACTTGCAGAAACAACCTATCATGGTTAAGTCAGAGCACA ACAAGATCAAAACAGGACAAAAATCAAAGCCAGTTTCATCATCTTTATCCTCATCATCATCAGCATCATCAGAAAGCATG AAGAAGAAGTACAAAGGAGTCAGAATGAGAACATGGGGTTCATTTGTTTCAGAGATTAGAGCACCAAATCAGAAAACAAG GATATGGCTAGGATCTTACTCAACACCAGAAGCAGCAGCAAGAGCCTATGATGCTGCACTTCTATGTCTCAAAGGGTCCT CAGCAAGTTTCAATTTCCCTTCAAGTTCTTCACTTTTCATTCCTCAAGACACTGCCATGTCCCCAAAATCAATCCAAAGA GTTGCTGCAGCTGCTGCAAATAGCTTCATTGACAACAATGCCAGCACCACCACTTCAACTCCTCCTCCTCCTCCTTCAAC CTCATCATCATTGGTCTCTTCCCCATCAATGGATGATGTCTCACTTGAATCATCTTTTGAATCAATGGCTATGATGGAAC CTTGGTACAGCCTGGATGATCTGCAATCCACTAAGTATGTTGATCAGATGCTAAGTGCTTCTTCTTTCTATGATATTGAT TCAACCCACCACCTGTTTAATGATGTGTATGAAGAGAGTGACATTCGTTTGTGGAACTTTTGCTGAGAGGGGTTCAAGCC AAATCAATTTTTTTTTTTCTTATCAGAAATTCAATTTGTTTGTCTTCCAGTGGTAGAACAACTTGAAGATATTACTGACC GTGACTGAATTCAATTTGTATTAGTATACACTGTGCCAATGTAATGCATATTAGATGAAATTCATGTAGGAATTAAACAA AAATTTTGCCCCTTTAAAGGGGATTCTACCTGTTTGGTATTATGCATCATTGATGTAAAGCTTGTTATATCAATATCATG AAGGGTTTTCCAAGTGTAGTGTAAAAAACATAAATACACCGCTATCATTTGTTATAAGCAATTTTCTTTCACTGTTTTTA ATGTAACCATGAGAGAATTTTTTTGTTGCAGGGGAAGGTATTAGAGATTCTTATTTTCAGTTCACTGAGAATAGGAAACA TGTACAGAGTGTGATAGCTTGAAACCATTGTAAAGGGTATCTTTTCTGATCATTGTCTACTTTCCTGTGTGCCTAAAGAA CAAAGAGGGTTGTTTCCTTGTTTTGATCTAGAAGTTTGGTATATTAGGCCTTATTCCTCTTTTAGAAACTTTAGATGGGG ATGAATCCTGAGTAGTTTCATTTTTATTTTGTGTGCAGAAACTGGATTGAATAAGTTAGCACATACTTGGAAACTCTTCT ACAATTGATTCTAAAGCCATAATCAACTTTTGAGAAGTTACTATTAGTAGCTTTAAGGTCTTAGATTTAATTCTGATGAA AGAGAAGCTAGTCCCGTGCGTTCTGATCGAGGTGTATTTCCCCTGCATTTTTCCCTTTACGTCCCAGAGAATGGTTTTTA TCAAGTTGTTGAAGGCTAAAATTAATGTAATTAAAATATCAAAAATGATTTGATTATATGCTGATTTCTGAGATTTCTTT GTTCTTAATTTGGCCAACTTTGTCCGTCTTTAGCAGCATGTGTATCTAGCAAAAACTAATAATTTAGTCATGAGTCATGA CTATAGGTTGTTGAAGCAAGCAACTCTTTCTCTTGTGTTCCATGCTAATGTAAC
CDS sequence (LotjaGi1g1v0257900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTAAGTCAGAGCACAACAAGATCAAAACAGGACAAAAATCAAAGCCAGTTTCATCATCTTTATCCTCATCATCATC AGCATCATCAGAAAGCATGAAGAAGAAGTACAAAGGAGTCAGAATGAGAACATGGGGTTCATTTGTTTCAGAGATTAGAG CACCAAATCAGAAAACAAGGATATGGCTAGGATCTTACTCAACACCAGAAGCAGCAGCAAGAGCCTATGATGCTGCACTT CTATGTCTCAAAGGGTCCTCAGCAAGTTTCAATTTCCCTTCAAGTTCTTCACTTTTCATTCCTCAAGACACTGCCATGTC CCCAAAATCAATCCAAAGAGTTGCTGCAGCTGCTGCAAATAGCTTCATTGACAACAATGCCAGCACCACCACTTCAACTC CTCCTCCTCCTCCTTCAACCTCATCATCATTGGTCTCTTCCCCATCAATGGATGATGTCTCACTTGAATCATCTTTTGAA TCAATGGCTATGATGGAACCTTGGTACAGCCTGGATGATCTGCAATCCACTAAGTATGTTGATCAGATGCTAAGTGCTTC TTCTTTCTATGATATTGATTCAACCCACCACCTGTTTAATGATGTGTATGAAGAGAGTGACATTCGTTTGTGGAACTTTT GCTGA
Protein sequence (LotjaGi1g1v0257900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKSEHNKIKTGQKSKPVSSSLSSSSSASSESMKKKYKGVRMRTWGSFVSEIRAPNQKTRIWLGSYSTPEAAARAYDAAL LCLKGSSASFNFPSSSSLFIPQDTAMSPKSIQRVAAAAANSFIDNNASTTTSTPPPPPSTSSSLVSSPSMDDVSLESSFE SMAMMEPWYSLDDLQSTKYVDQMLSASSFYDIDSTHHLFNDVYEESDIRLWNFC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 38 | 38 | - | – | |
| PIRSF | 5 | 141 | 137 | 4.0E-19 | ||
| PANTHER | 12 | 213 | 202 | 6.9E-75 | – | |
| PANTHER | 12 | 213 | 202 | 6.9E-75 | – | |
| MobiDBLite | 13 | 33 | 21 | - | – | |
| Gene3D | 35 | 95 | 61 | 1.4E-26 | ||
| SMART | 36 | 99 | 64 | 2.0E-30 | ||
| Pfam | 36 | 85 | 50 | 9.3E-10 | ||
| ProSiteProfiles | 36 | 93 | 58 | 20.587 | ||
| SUPERFAMILY | 36 | 94 | 59 | 2.09E-18 | ||
| CDD | 37 | 95 | 59 | 2.25101E-18 | ||
| PRINTS | 37 | 48 | 12 | 7.9E-8 | ||
| PRINTS | 59 | 75 | 17 | 7.9E-8 | ||
| MobiDBLite | 125 | 151 | 27 | - | – | |
| PIRSF | 138 | 213 | 76 | 29.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0257900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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