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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0258100 |
| Transcript ID | LotjaGi1g1v0258100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT1G18760.1 Zinc finger, C3HC4 type (RING finger) family protein; Swiss-Prot: sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like; TrEMBL-Plants: tr|A0A151UBF7|A0A151UBF7_CAJCA E3 ubiquitin-protein ligase RNF181; Found in the gene: LotjaGi1g1v0258100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:62500421..62501205) extracted from Lotus japonicus Gifu genome v1.2.
TCTCATTTTCCTGTGATTCTCCATATAAGGGCATCCCAATCTAAAATCCTTTTCACCATGACAATCACTACTCGGTATCT ATGGAGAAGATTCTCCCCAGAATATCAGATTATGGCTGGAGATTATCTAAAACTCTTTATTAGGGTTTTTTCTCGCCAAC CTCAGGTAAACAACACACAAACAATTCTAAAATCTATTGATTCTCGTCCCTTTGTATGCATAGAACCTCATAGATTTCTC AATGAGTGTCGAGATTTCTTGTCAACATTCTTATCGGACATACGCTCACTACCTCCTTGTTTCGTTGATGTGGTCATGCT TGCAATTAAAAATCGGTTTAAGATTATCCTAACACCCGTTGACTCTTGTGCACCCAAGGAGCTTAATATGGGTTTGGCTA TTATCCTAGTTGAAGATGGTATTGGTCGGGTGGAAGTGAAAGACTACACAATTGATGAGTATGATCCTGAGATCCAGAGA AGCCATCAACAAGTTACTAGGGGAGTAATGGTTCCAGCATCTAGTGAAGCCATTATGAGTTTGCTCAAGAAATCAAAGGT TACAAGGTCAGATGAATGTCGGGTCTGTTTGGAGGAGTTCCATGTTAGTGGTAGTGATGGTGATGATGCTAATTGCATAA GAGAAGACGGGTACTCAATGCCGTGTGGTCACATGTTTCACCAACATTGTATTATAACATGGTTGCTAACCAATCATGTG TGTCCTTTGTGTCGCAACCCTCTGCCAACCAATGACCACTAAGTTTGTGATTGGATTCAAGCATG
CDS sequence (LotjaGi1g1v0258100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATCACTACTCGGTATCTATGGAGAAGATTCTCCCCAGAATATCAGATTATGGCTGGAGATTATCTAAAACTCTT TATTAGGGTTTTTTCTCGCCAACCTCAGGTAAACAACACACAAACAATTCTAAAATCTATTGATTCTCGTCCCTTTGTAT GCATAGAACCTCATAGATTTCTCAATGAGTGTCGAGATTTCTTGTCAACATTCTTATCGGACATACGCTCACTACCTCCT TGTTTCGTTGATGTGGTCATGCTTGCAATTAAAAATCGGTTTAAGATTATCCTAACACCCGTTGACTCTTGTGCACCCAA GGAGCTTAATATGGGTTTGGCTATTATCCTAGTTGAAGATGGTATTGGTCGGGTGGAAGTGAAAGACTACACAATTGATG AGTATGATCCTGAGATCCAGAGAAGCCATCAACAAGTTACTAGGGGAGTAATGGTTCCAGCATCTAGTGAAGCCATTATG AGTTTGCTCAAGAAATCAAAGGTTACAAGGTCAGATGAATGTCGGGTCTGTTTGGAGGAGTTCCATGTTAGTGGTAGTGA TGGTGATGATGCTAATTGCATAAGAGAAGACGGGTACTCAATGCCGTGTGGTCACATGTTTCACCAACATTGTATTATAA CATGGTTGCTAACCAATCATGTGTGTCCTTTGTGTCGCAACCCTCTGCCAACCAATGACCACTAA
Protein sequence (LotjaGi1g1v0258100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTITTRYLWRRFSPEYQIMAGDYLKLFIRVFSRQPQVNNTQTILKSIDSRPFVCIEPHRFLNECRDFLSTFLSDIRSLPP CFVDVVMLAIKNRFKIILTPVDSCAPKELNMGLAIILVEDGIGRVEVKDYTIDEYDPEIQRSHQQVTRGVMVPASSEAIM SLLKKSKVTRSDECRVCLEEFHVSGSDGDDANCIREDGYSMPCGHMFHQHCIITWLLTNHVCPLCRNPLPTNDH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 126 | 233 | 108 | 6.8E-25 | – | |
| PANTHER | 126 | 233 | 108 | 6.8E-25 | – | |
| Gene3D | 160 | 234 | 75 | 1.7E-16 | ||
| SUPERFAMILY | 166 | 231 | 66 | 4.24E-19 | – | |
| Pfam | 172 | 226 | 55 | 3.9E-10 | ||
| SMART | 174 | 225 | 52 | 2.4E-5 | ||
| ProSiteProfiles | 174 | 226 | 53 | 11.781 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0258100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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