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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0258200 |
| Transcript ID | LotjaGi1g1v0258200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane emp24 domain-containing protein; TAIR: AT1G21900.1 emp24/gp25L/p24 family/GOLD family protein; Swiss-Prot: sp|Q8RWM6|P24D5_ARATH Transmembrane emp24 domain-containing protein p24delta5; TrEMBL-Plants: tr|V7AUX8|V7AUX8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0258200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:62581472..62584400) extracted from Lotus japonicus Gifu genome v1.2.
CAAATAATGAAGTGGTAACTTTGTTCTACTCCATCATAAAAGACCCCAAACGATGAGATGAGATTTTTTTTCCATTCACT CCGCTTCATTCCATTTCATTATATTCCGCTCCGTTCCGCTCCATTATGTTTCATCAATCTACATAGCTTTAATTAATTAT ACTCATCCTTACCGTCTCTTCTTTCTGTCGCTAGTAATTGACAAATTCATCAGATCTGAGCAGCCTCGTGAGTAGTTTTC GAGTATCTGAATCTAACTCGAAGGTCAACCTTTGGTAATGGCGAAGGACTTGAGAACCCGAATCACTCTTCTCTTGTTCT TCTGCTACACCACTTTTGTGCTCCATTCAACTGAGGCTGTTTGGTTAACCCTTCCCAGTTCAGGAACTAAGTGCGTGTCG GAGGAAATCCAGACACACATCGTTGTTTTAGCCGATTACTATGTTGTAGCTGATGATGAAATTAAGGGTCACCAGCTTCC CACTGTTTCTGCCAAGGTATGTTTCCTGATTCAGCTTATTGATCTATATTCATTAGCCACTTGTTTTAATATTTCTATAT TTGAATATTTTGTAAAATGTTTAAACTTTCTGCTTAATATGGGGAATTGGCTGTGAAATTGATTTCAAGATATGGAAGGT GAGGGAAAATAGAGAGAAGGAAAAAAATAATGGGTCAATGATGAATGGGAGAATACCTGTTTATTTTTAATTTGCTTCAC CATTGAATTTCCTGTCTCTGATTTGTTGCTACTAACATGCCTGCTTGTAGATCCTTAACAAATTTGGTACTAAATTGCTT ATTTGAGGGGAGTGAGGGTAGAACTCTATCAATGAGCTATTTAGCTTTGAAGTTAAGATTATAATAGTGGACTTTACATC ACATCTTAACCCAAGACAACTAAGGGCACATTTTGTAACATTTTTATTAAGTGCTTATAGCAATAAGTGTTTATGTCGTA AGCTTTCATTCATAAGTTTGTTTGAGAAACTTATTGAAATAAGGTCAAAATAGCTTATAGGTAAATTTAAATGCTTAACG CTTATGAAAGTAAGCTCAACAAAGTTGATAGCTAGATCATAAACACACTTTCATAAGTGTCTATGCTAAATGATAAACTA AAATCAGTTATTCCAAACGTAGCATAAGTCTTTAATAGAATGTTTGGGTTAACTTCTCTTTTCTCATTAACAATTTTGAA ATTGGAACCCAGAAGGTCATTAGAAAAGCTTCTTCTCATAATCGATTATGGCTTTAGAATCAACTGTACAAGGAAACATG CACTAACTCATATTGTCTTTCTTAATTAATGTGTGACTTTATTATTATTTTTTTTGAAACTTAATGTGTGACTTTATTAC TTGTGATTGAATTTGTCAGTATGGAAATTAATTTCCTTGTTCTTGATCTCCAATTTCGCACCTCAGTGTACAAGTATGAT AATATTCATTTTGACCAACTGCATTTTATATTGCCTGCTTTTTTTTCCCCGCAGGTGACATCTCCTTATGGAAATAATCT TCACCACAATGAAAATGTTACCCAAGGTCAGTTTGCATTCACAGCAACTGAGAGTGGGAACTACATGGCGTGCTTTTGGA TTGATGGCAAACATCAAGAAGCTGCAGGAGGTACCATACTCAGTCTTGAATGGAAAACTGGAATCTCTGCCAAAGATTGG GACTCTGTTGCAAAAAAAGAAAAGCTAGAGGTATTAATTAAATTTCGTTCGTTCTCTTTCAAGGCCAATGTGATAATATG CAACTTAGTAAATGTTTGGATATACGGTGGAAAATCATGGTGGACAGCCACAAAATCTAAGGGAAGTTGTTTATGTACAC CGTGGTTTTGGCTTACTGGTTTTCCCCACCGTGTATAAACATGCGCTTAGTAATTCCAGTGTTTAATGCCATATTAATTA TGTCCATTTGTTTAATTTTTAGGGTGTTGAACTTGAGCTCAGGAAACTTGAAGGAGCTGTGGAAGCCATCCGTGATAATC TAATATACTTGAAGACTAGGTCAGTCAGTCTTATATTCTTTGTGATGTTCGATTTCAGTTAATCAGCTCTTTTTAATTAG GATGCAATCTTTGTGTTGAGAGGTCTTTATGAAGTGTATATAATACTTCTAAGTTCTTTACTAAGTATCAATGATGGTGA TGGGTGGGCTAGAAAACATGACTCCTACTAAATAACTTAAAATTATTCACCATGCTTGATTAGTGCATTTAATTAACTTT ATTTTCTTGGACATTGCTACAGGGAAGAGGAGATGAGGGAAGTTAGTGAAACAACAAATGCTAGAGTTGCTTGGTTCAGT ATAATGTCTCTTGGCCTCTGCATTTCGGTTTCAGGGTTGCAGCTATGGTATCTGAAGCGATACTTTCAGAAGAAGAAGCT CATATAGATATGGTGTCGAAACGAAACCAACATCAATTTTTTCTCAAGCTTTTAAGAGTCAAGAATGAGTCCAATATTGT ATAGTTTTTCTTGTGGAAATTTTCATGTATCATTGGGGGCTAGGGGGTTACCCCTTAACATATATGCAGAATTGACGAGT TTAGTTACTTTCATAGAGTCAAAGCAAACGATAATGTTGAGCATCTCCTCTAATTTATCTATGAAACCCTTCATCATGTC ACTCAGAAAATCCAAGACAATTCAAAATGTTTGATGCAAATGATCTCCTATGACTGCAAACTGATATGCCCTGTCTTGAA GAAGGACTGGCTAAAATTAGGAAAATGTTTGTGAGCAGCACTTGAAAATTATTAATAAAAAGAAATTTGTATTATATTTC AAGAATATAAATACTGCCATGGATTTCCTTATATGTTTATGAGCCTGAACTTTTTTTCTTTTTTTGACAATATGAGCCAT AACTTCAGGAGTTCTGATATATGAACTACCAATACTAAAAACATCCCCA
CDS sequence (LotjaGi1g1v0258200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAGGACTTGAGAACCCGAATCACTCTTCTCTTGTTCTTCTGCTACACCACTTTTGTGCTCCATTCAACTGAGGC TGTTTGGTTAACCCTTCCCAGTTCAGGAACTAAGTGCGTGTCGGAGGAAATCCAGACACACATCGTTGTTTTAGCCGATT ACTATGTTGTAGCTGATGATGAAATTAAGGGTCACCAGCTTCCCACTGTTTCTGCCAAGGTGACATCTCCTTATGGAAAT AATCTTCACCACAATGAAAATGTTACCCAAGGTCAGTTTGCATTCACAGCAACTGAGAGTGGGAACTACATGGCGTGCTT TTGGATTGATGGCAAACATCAAGAAGCTGCAGGAGGTACCATACTCAGTCTTGAATGGAAAACTGGAATCTCTGCCAAAG ATTGGGACTCTGTTGCAAAAAAAGAAAAGCTAGAGGGTGTTGAACTTGAGCTCAGGAAACTTGAAGGAGCTGTGGAAGCC ATCCGTGATAATCTAATATACTTGAAGACTAGGGAAGAGGAGATGAGGGAAGTTAGTGAAACAACAAATGCTAGAGTTGC TTGGTTCAGTATAATGTCTCTTGGCCTCTGCATTTCGGTTTCAGGGTTGCAGCTATGGTATCTGAAGCGATACTTTCAGA AGAAGAAGCTCATATAG
Protein sequence (LotjaGi1g1v0258200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKDLRTRITLLLFFCYTTFVLHSTEAVWLTLPSSGTKCVSEEIQTHIVVLADYYVVADDEIKGHQLPTVSAKVTSPYGN NLHHNENVTQGQFAFTATESGNYMACFWIDGKHQEAAGGTILSLEWKTGISAKDWDSVAKKEKLEGVELELRKLEGAVEA IRDNLIYLKTREEEMREVSETTNARVAWFSIMSLGLCISVSGLQLWYLKRYFQKKKLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 6 | 218 | 213 | 4.2E-116 | – | |
| PANTHER | 6 | 218 | 213 | 4.2E-116 | ||
| Phobius | 11 | 22 | 12 | - | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| SMART | 27 | 213 | 187 | 3.1E-60 | ||
| Phobius | 28 | 185 | 158 | - | – | |
| Pfam | 29 | 213 | 185 | 6.4E-48 | ||
| ProSiteProfiles | 37 | 153 | 117 | 13.729 | ||
| Coils | 144 | 164 | 21 | - | – | |
| Phobius | 186 | 208 | 23 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| Phobius | 209 | 218 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0258200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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