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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0271000 |
| Transcript ID | LotjaGi1g1v0271000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G26540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540; TrEMBL-Plants: tr|V7AY05|V7AY05_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0271000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66092039..66095117) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAATTTACTTTGAGAACTAAATTTCAAATACAAGTATACAACAGAGAAATCAAATGCTACCGTACATTTCAAGAATA ACATAACAGTAATATCCACTGTGCTATATGGGTGCAGGTGCTAGTGCCGCTTCTGTACTGAACCAAGTCCTCCACCAACC AAACCTGAAACCACAACCCCACGGCGCCGCCGCCACAACCACCACCACCGCCGCCACCAGGTCAGTGATCAGAACAATCC TCGGCTACCTCAAAGTTGGTCGCATCCAAAAAGCCACATCCATTCTCTTCGGCTACCCAGAACCCTTCCCTTACTCTCTC TACGCCCTCTTCTTCCGTCTCTGCTCCTCCCACCGCTTCATCGTTGAGGCCCGCAAGGTTGAATCCCACTTGTTAACCTT CTCCCCCAACCCACCCACCTTCCTCCTCAACCGCGCCATTGAGGCCTTTGCCAAATGCTCCTGCCTCCGCGATGCACGGG ACGTGTTCGACGAAATGCCCCACAGAGATGGCGGCACCTGGAACGCCATGATCACCGCTTATTCTCAATCGGGTTTCCCT CGCGAGGCTATTTCGATGTTCATTTGTATGAATAGGTCTGGTTTGTTTGCCAATGAGGTCACCTTTGCCGGTGTTCTTGC CTCTTGTGCTGCTGCTAATGAGCTTCCTCTGTCCACGCAGGTTCATGGGCATGTCACAAAATTTGGTTTTTCTGGGAATG TGATACTTGGGACTTCCCTTGTTGATGTTTATGGCAAATGTGGGGTTATGGATGATGCCCGCAAGATGTTTCATGAGATT CCGCACCCCAATGCTGTCACTTGGAATGTGATCGTGAGGCGGTATCTTGATGCTGGTGATGCAAAGGAAGCTATTTCCAT GTTCTCGCGGATGTTCTTGTTTGCTGTTTCGCCGTTGAATTATACCTTCTCTAATGCTCTTGTTGCTTGTTCCCGTGTGT GTGCAATCGTGGAGGGGATGCAGATACATGGAGTTGTTGTGAAATCAGGACTGCAGGAGGATAATGTTGTTTCTAGTTCT CTGTTCAAAATGTATGTCAAATGTGGTAACTCAGAGGATGGTACTCGGGTTTTTAACCAGCTTGGTTCAAAAGATTTGGT GTCTTGGACTTCCATTGTGTCGGGGTATGCAATGAGTGGAGAAACATGGGAGGCAAGAAAACTTTTTGATGAGATGCCTG AACGTAATGTGATCTCGTGGAATGCTATGTTGGATGGATATATCAAATCCTTTGAATGGAGCGAGGCATTAGATTTTGTT TATCTGATGCTTGGCTCAGTCAAAGATGTGGATCATGTCACCCTTACTTTAATGTTAAAGGTGTCAGTTGGCCTTTTGGA TCATGAAATGGGGAAACGGATTCATGGCTATGTCTATCGACGTGGTTTTCACTCGAACCTTATGGTCAGCAATGCCCTTC TTGACATGTATGGTAAATGTGGAAACTTGAATAGCGTGAGAGTGTTGTTTAGCCAGATGAGTAATTGGCGTGACAGAGTT TCTTGGAATGCTTTATTGGCTAGCTATGGTAATCATAATTTAAGTGAACAAGCATTGACTATATTTTCAGGGATGCAGTG GGAGACCAAACCAACTAAGTATACATTTGGAACCCTTTTAGAAGCATGTGCAGATACCTTTACTCTTCACCTAGGCAAAC AAATTCATGGATTCATCATTAGACATGGATATCAAGTAGATACTATAGTCAGCACTGCATTGGTTTACATGTACTCTAAA TGCCGTTGTCTTGAGTATGCTTTTGAGGTTCTGAAGGGGGCAGTTTCTAGGGATGTGATAATTTGGAACACCATAATTTT GGGGTGCTGTCACAATCATAAGGGTAAAGAGGCACTTGCACTTTTTCTGAAAATGGAAGAAGAAGGCGTCAAACCAGACC ATGTGACCTTTGAGGGCATTCTGCGTGCTTGTGTTGAAGAAGGCCTTGTTGAGTTTGGCACACAATGCTTCAAGTCAATG AGCAATGAATACTATGTCCCACCTCGGCTGGAGCATTACGACTGCATGATTGAACTCTACGGCCAGAATGGATGCATGGA AGAGCTGGAGAGTTTTATAAAGACAATGACAATAGATCCGACTATTCCAATGTTGAAAAGAGCCCTTGATGCTTGTAAGA AAAATGACTGCCCAAGATTGGGAGAATGGATTACAGACAAAATTAATGAATTTCAATATTAATTGATTTCAACTTACAGC AGGGACCTGGCCTTTTTAATGATGACAATTATATTAAAGCTTTGATGAGCTGCTCCAAGAAAAATGGTATATGCAATTTC AGTGAGCAGACATAATCTGGTTTTGCTGAAGGAAAATGAGATGATTTAAAGAGTACATGGAGAAGACTAATTTCCCGTTA CAAGAGTATGCAAAAGAAAGTGCAAACTATTTTTTACTTCAGATTAAGATTCATGTGAGGAGAAGGATCATCCTTGGGAT CAGTCTGATTCTTGTTTGTAGAATAAGCAGAAGGAAGCTTTTTCTGATGAAGTTATAATGAATTTGGAACTGTAAATATT GACAATGATGGAATAATTTGCCAGATAATGCAAGCATCATGTGTCTTGGCAGTTTGGAGCTGTAAATATTGACAATGATG GAATAAGTTGCCAGAAAATGCAAGCATCATGTGTCTTGGCAGTTGGCATGGCAAAGTATGATTGCTACCTGCACCAAAAT TACCCAATGAGGGCAATGTTTAACTAGACGCTGGGATTTTCATCCGAATATTTAAGCAGAAAGCTAAGGAAATTTTGTTT ATTAGGATTCTTCTGCTTGTTGAATGGTTAATCGCATTTGTAATTGTAAATAATTATTCTACCCAACATATTCGAATTCT CAGTTCTTCCTAGCGGCAAAGGATTTTTTTTTTTCTTTTACATCTTTCTTGTCGGATGGCATGTTCTATGTGTGCATGAA GAGGTGGAAGAGTCTTTGAATGATAACAAGTGGTAAGAGATGTGTGACCCATAATTTGGGGAGATGAAAGTCCAGGAATT TGATCCCTAAAGGAAAAATTTGTCCCATAAAAAAAGCGG
CDS sequence (LotjaGi1g1v0271000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCAGGTGCTAGTGCCGCTTCTGTACTGAACCAAGTCCTCCACCAACCAAACCTGAAACCACAACCCCACGGCGC CGCCGCCACAACCACCACCACCGCCGCCACCAGGTCAGTGATCAGAACAATCCTCGGCTACCTCAAAGTTGGTCGCATCC AAAAAGCCACATCCATTCTCTTCGGCTACCCAGAACCCTTCCCTTACTCTCTCTACGCCCTCTTCTTCCGTCTCTGCTCC TCCCACCGCTTCATCGTTGAGGCCCGCAAGGTTGAATCCCACTTGTTAACCTTCTCCCCCAACCCACCCACCTTCCTCCT CAACCGCGCCATTGAGGCCTTTGCCAAATGCTCCTGCCTCCGCGATGCACGGGACGTGTTCGACGAAATGCCCCACAGAG ATGGCGGCACCTGGAACGCCATGATCACCGCTTATTCTCAATCGGGTTTCCCTCGCGAGGCTATTTCGATGTTCATTTGT ATGAATAGGTCTGGTTTGTTTGCCAATGAGGTCACCTTTGCCGGTGTTCTTGCCTCTTGTGCTGCTGCTAATGAGCTTCC TCTGTCCACGCAGGTTCATGGGCATGTCACAAAATTTGGTTTTTCTGGGAATGTGATACTTGGGACTTCCCTTGTTGATG TTTATGGCAAATGTGGGGTTATGGATGATGCCCGCAAGATGTTTCATGAGATTCCGCACCCCAATGCTGTCACTTGGAAT GTGATCGTGAGGCGGTATCTTGATGCTGGTGATGCAAAGGAAGCTATTTCCATGTTCTCGCGGATGTTCTTGTTTGCTGT TTCGCCGTTGAATTATACCTTCTCTAATGCTCTTGTTGCTTGTTCCCGTGTGTGTGCAATCGTGGAGGGGATGCAGATAC ATGGAGTTGTTGTGAAATCAGGACTGCAGGAGGATAATGTTGTTTCTAGTTCTCTGTTCAAAATGTATGTCAAATGTGGT AACTCAGAGGATGGTACTCGGGTTTTTAACCAGCTTGGTTCAAAAGATTTGGTGTCTTGGACTTCCATTGTGTCGGGGTA TGCAATGAGTGGAGAAACATGGGAGGCAAGAAAACTTTTTGATGAGATGCCTGAACGTAATGTGATCTCGTGGAATGCTA TGTTGGATGGATATATCAAATCCTTTGAATGGAGCGAGGCATTAGATTTTGTTTATCTGATGCTTGGCTCAGTCAAAGAT GTGGATCATGTCACCCTTACTTTAATGTTAAAGGTGTCAGTTGGCCTTTTGGATCATGAAATGGGGAAACGGATTCATGG CTATGTCTATCGACGTGGTTTTCACTCGAACCTTATGGTCAGCAATGCCCTTCTTGACATGTATGGTAAATGTGGAAACT TGAATAGCGTGAGAGTGTTGTTTAGCCAGATGAGTAATTGGCGTGACAGAGTTTCTTGGAATGCTTTATTGGCTAGCTAT GGTAATCATAATTTAAGTGAACAAGCATTGACTATATTTTCAGGGATGCAGTGGGAGACCAAACCAACTAAGTATACATT TGGAACCCTTTTAGAAGCATGTGCAGATACCTTTACTCTTCACCTAGGCAAACAAATTCATGGATTCATCATTAGACATG GATATCAAGTAGATACTATAGTCAGCACTGCATTGGTTTACATGTACTCTAAATGCCGTTGTCTTGAGTATGCTTTTGAG GTTCTGAAGGGGGCAGTTTCTAGGGATGTGATAATTTGGAACACCATAATTTTGGGGTGCTGTCACAATCATAAGGGTAA AGAGGCACTTGCACTTTTTCTGAAAATGGAAGAAGAAGGCGTCAAACCAGACCATGTGACCTTTGAGGGCATTCTGCGTG CTTGTGTTGAAGAAGGCCTTGTTGAGTTTGGCACACAATGCTTCAAGTCAATGAGCAATGAATACTATGTCCCACCTCGG CTGGAGCATTACGACTGCATGATTGAACTCTACGGCCAGAATGGATGCATGGAAGAGCTGGAGAGTTTTATAAAGACAAT GACAATAGATCCGACTATTCCAATGTTGAAAAGAGCCCTTGATGCTTGTAAGAAAAATGACTGCCCAAGATTGGGAGAAT GGATTACAGACAAAATTAATGAATTTCAATATTAA
Protein sequence (LotjaGi1g1v0271000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAGASAASVLNQVLHQPNLKPQPHGAAATTTTTAATRSVIRTILGYLKVGRIQKATSILFGYPEPFPYSLYALFFRLCS SHRFIVEARKVESHLLTFSPNPPTFLLNRAIEAFAKCSCLRDARDVFDEMPHRDGGTWNAMITAYSQSGFPREAISMFIC MNRSGLFANEVTFAGVLASCAAANELPLSTQVHGHVTKFGFSGNVILGTSLVDVYGKCGVMDDARKMFHEIPHPNAVTWN VIVRRYLDAGDAKEAISMFSRMFLFAVSPLNYTFSNALVACSRVCAIVEGMQIHGVVVKSGLQEDNVVSSSLFKMYVKCG NSEDGTRVFNQLGSKDLVSWTSIVSGYAMSGETWEARKLFDEMPERNVISWNAMLDGYIKSFEWSEALDFVYLMLGSVKD VDHVTLTLMLKVSVGLLDHEMGKRIHGYVYRRGFHSNLMVSNALLDMYGKCGNLNSVRVLFSQMSNWRDRVSWNALLASY GNHNLSEQALTIFSGMQWETKPTKYTFGTLLEACADTFTLHLGKQIHGFIIRHGYQVDTIVSTALVYMYSKCRCLEYAFE VLKGAVSRDVIIWNTIILGCCHNHKGKEALALFLKMEEEGVKPDHVTFEGILRACVEEGLVEFGTQCFKSMSNEYYVPPR LEHYDCMIELYGQNGCMEELESFIKTMTIDPTIPMLKRALDACKKNDCPRLGEWITDKINEFQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 61 | 183 | 123 | 2.1E-115 | – | |
| Gene3D | 75 | 232 | 158 | 6.6E-25 | ||
| ProSiteProfiles | 103 | 133 | 31 | 6.884 | ||
| Pfam | 110 | 132 | 23 | 0.22 | ||
| ProSiteProfiles | 134 | 168 | 35 | 10.479 | ||
| Pfam | 137 | 166 | 30 | 1.1E-7 | ||
| ProSiteProfiles | 169 | 203 | 35 | 5.722 | ||
| PANTHER | 189 | 293 | 105 | 2.1E-115 | – | |
| ProSiteProfiles | 204 | 234 | 31 | 6.752 | ||
| Pfam | 209 | 231 | 23 | 0.05 | ||
| Gene3D | 233 | 335 | 103 | 7.8E-17 | ||
| ProSiteProfiles | 235 | 269 | 35 | 10.435 | ||
| TIGRFAM | 237 | 262 | 26 | 0.0026 | ||
| Pfam | 237 | 262 | 26 | 0.002 | ||
| PANTHER | 285 | 363 | 79 | 2.1E-115 | – | |
| ProSiteProfiles | 305 | 335 | 31 | 6.906 | ||
| Gene3D | 336 | 422 | 87 | 6.0E-15 | ||
| ProSiteProfiles | 336 | 370 | 35 | 11.071 | ||
| Pfam | 338 | 368 | 31 | 5.3E-7 | ||
| TIGRFAM | 338 | 368 | 31 | 3.5E-4 | ||
| Pfam | 369 | 395 | 27 | 0.0026 | ||
| TIGRFAM | 369 | 395 | 27 | 0.002 | ||
| PANTHER | 370 | 524 | 155 | 2.1E-115 | – | |
| ProSiteProfiles | 371 | 397 | 27 | 5.097 | ||
| Gene3D | 423 | 523 | 101 | 2.0E-15 | ||
| ProSiteProfiles | 437 | 467 | 31 | 7.267 | ||
| Pfam | 442 | 465 | 24 | 0.16 | ||
| ProSiteProfiles | 469 | 499 | 31 | 7.837 | ||
| Pfam | 469 | 515 | 47 | 2.7E-7 | ||
| ProSiteProfiles | 503 | 537 | 35 | 5.821 | ||
| PANTHER | 520 | 694 | 175 | 2.1E-115 | – | |
| Gene3D | 524 | 621 | 98 | 2.7E-20 | ||
| ProSiteProfiles | 538 | 568 | 31 | 5.7 | ||
| ProSiteProfiles | 569 | 603 | 35 | 12.156 | ||
| Pfam | 569 | 615 | 47 | 2.2E-12 | ||
| TIGRFAM | 572 | 604 | 33 | 2.5E-7 | ||
| ProSiteProfiles | 604 | 638 | 35 | 8.035 | ||
| Gene3D | 622 | 703 | 82 | 3.5E-7 | ||
| ProSiteProfiles | 640 | 674 | 35 | 6.774 | ||
| Pfam | 643 | 667 | 25 | 0.22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0271000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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