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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0271000 |
| Transcript ID | LotjaGi1g1v0271000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G26540.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LRV2|PP256_ARATH Pentatricopeptide repeat-containing protein At3g26540; TrEMBL-Plants: tr|A0A1J7I787|A0A1J7I787_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0271000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66092039..66095117) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAATTTACTTTGAGAACTAAATTTCAAATACAAGTATACAACAGAGAAATCAAATGCTACCGTACATTTCAAGAATA ACATAACAGTAATATCCACTGTGCTATATGGGTGCAGGTGCTAGTGCCGCTTCTGTACTGAACCAAGTCCTCCACCAACC AAACCTGAAACCACAACCCCACGGCGCCGCCGCCACAACCACCACCACCGCCGCCACCAGGTCAGTGATCAGAACAATCC TCGGCTACCTCAAAGTTGGTCGCATCCAAAAAGCCACATCCATTCTCTTCGGCTACCCAGAACCCTTCCCTTACTCTCTC TACGCCCTCTTCTTCCGTCTCTGCTCCTCCCACCGCTTCATCGTTGAGGCCCGCAAGGTTGAATCCCACTTGTTAACCTT CTCCCCCAACCCACCCACCTTCCTCCTCAACCGCGCCATTGAGGCCTTTGCCAAATGCTCCTGCCTCCGCGATGCACGGG ACGTGTTCGACGAAATGCCCCACAGAGATGGCGGCACCTGGAACGCCATGATCACCGCTTATTCTCAATCGGGTTTCCCT CGCGAGGCTATTTCGATGTTCATTTGTATGAATAGGTCTGGTTTGTTTGCCAATGAGGTCACCTTTGCCGGTGTTCTTGC CTCTTGTGCTGCTGCTAATGAGCTTCCTCTGTCCACGCAGGTTCATGGGCATGTCACAAAATTTGGTTTTTCTGGGAATG TGATACTTGGGACTTCCCTTGTTGATGTTTATGGCAAATGTGGGGTTATGGATGATGCCCGCAAGATGTTTCATGAGATT CCGCACCCCAATGCTGTCACTTGGAATGTGATCGTGAGGCGGTATCTTGATGCTGGTGATGCAAAGGAAGCTATTTCCAT GTTCTCGCGGATGTTCTTGTTTGCTGTTTCGCCGTTGAATTATACCTTCTCTAATGCTCTTGTTGCTTGTTCCCGTGTGT GTGCAATCGTGGAGGGGATGCAGATACATGGAGTTGTTGTGAAATCAGGACTGCAGGAGGATAATGTTGTTTCTAGTTCT CTGTTCAAAATGTATGTCAAATGTGGTAACTCAGAGGATGGTACTCGGGTTTTTAACCAGCTTGGTTCAAAAGATTTGGT GTCTTGGACTTCCATTGTGTCGGGGTATGCAATGAGTGGAGAAACATGGGAGGCAAGAAAACTTTTTGATGAGATGCCTG AACGTAATGTGATCTCGTGGAATGCTATGTTGGATGGATATATCAAATCCTTTGAATGGAGCGAGGCATTAGATTTTGTT TATCTGATGCTTGGCTCAGTCAAAGATGTGGATCATGTCACCCTTACTTTAATGTTAAAGGTGTCAGTTGGCCTTTTGGA TCATGAAATGGGGAAACGGATTCATGGCTATGTCTATCGACGTGGTTTTCACTCGAACCTTATGGTCAGCAATGCCCTTC TTGACATGTATGGTAAATGTGGAAACTTGAATAGCGTGAGAGTGTTGTTTAGCCAGATGAGTAATTGGCGTGACAGAGTT TCTTGGAATGCTTTATTGGCTAGCTATGGTAATCATAATTTAAGTGAACAAGCATTGACTATATTTTCAGGGATGCAGTG GGAGACCAAACCAACTAAGTATACATTTGGAACCCTTTTAGAAGCATGTGCAGATACCTTTACTCTTCACCTAGGCAAAC AAATTCATGGATTCATCATTAGACATGGATATCAAGTAGATACTATAGTCAGCACTGCATTGGTTTACATGTACTCTAAA TGCCGTTGTCTTGAGTATGCTTTTGAGGTTCTGAAGGGGGCAGTTTCTAGGGATGTGATAATTTGGAACACCATAATTTT GGGGTGCTGTCACAATCATAAGGGTAAAGAGGCACTTGCACTTTTTCTGAAAATGGAAGAAGAAGGCGTCAAACCAGACC ATGTGACCTTTGAGGGCATTCTGCGTGCTTGTGTTGAAGAAGGCCTTGTTGAGTTTGGCACACAATGCTTCAAGTCAATG AGCAATGAATACTATGTCCCACCTCGGCTGGAGCATTACGACTGCATGATTGAACTCTACGGCCAGAATGGATGCATGGA AGAGCTGGAGAGTTTTATAAAGACAATGACAATAGATCCGACTATTCCAATGTTGAAAAGAGCCCTTGATGCTTGTAAGA AAAATGACTGCCCAAGATTGGGAGAATGGATTACAGACAAAATTAATGAATTTCAATATTAATTGATTTCAACTTACAGC AGGGACCTGGCCTTTTTAATGATGACAATTATATTAAAGCTTTGATGAGCTGCTCCAAGAAAAATGGTATATGCAATTTC AGTGAGCAGACATAATCTGGTTTTGCTGAAGGAAAATGAGATGATTTAAAGAGTACATGGAGAAGACTAATTTCCCGTTA CAAGAGTATGCAAAAGAAAGTGCAAACTATTTTTTACTTCAGATTAAGATTCATGTGAGGAGAAGGATCATCCTTGGGAT CAGTCTGATTCTTGTTTGTAGAATAAGCAGAAGGAAGCTTTTTCTGATGAAGTTATAATGAATTTGGAACTGTAAATATT GACAATGATGGAATAATTTGCCAGATAATGCAAGCATCATGTGTCTTGGCAGTTTGGAGCTGTAAATATTGACAATGATG GAATAAGTTGCCAGAAAATGCAAGCATCATGTGTCTTGGCAGTTGGCATGGCAAAGTATGATTGCTACCTGCACCAAAAT TACCCAATGAGGGCAATGTTTAACTAGACGCTGGGATTTTCATCCGAATATTTAAGCAGAAAGCTAAGGAAATTTTGTTT ATTAGGATTCTTCTGCTTGTTGAATGGTTAATCGCATTTGTAATTGTAAATAATTATTCTACCCAACATATTCGAATTCT CAGTTCTTCCTAGCGGCAAAGGATTTTTTTTTTTCTTTTACATCTTTCTTGTCGGATGGCATGTTCTATGTGTGCATGAA GAGGTGGAAGAGTCTTTGAATGATAACAAGTGGTAAGAGATGTGTGACCCATAATTTGGGGAGATGAAAGTCCAGGAATT TGATCCCTAAAGGAAAAATTTGTCCCATAAAAAAAGCGG
CDS sequence (LotjaGi1g1v0271000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATGCCCGCAAGATGTTTCATGAGATTCCGCACCCCAATGCTGTCACTTGGAATGTGATCGTGAGGCGGTATCT TGATGCTGGTGATGCAAAGGAAGCTATTTCCATGTTCTCGCGGATGTTCTTGTTTGCTGTTTCGCCGTTGAATTATACCT TCTCTAATGCTCTTGTTGCTTGTTCCCGTGTGTGTGCAATCGTGGAGGGGATGCAGATACATGGAGTTGTTGTGAAATCA GGACTGCAGGAGGATAATGTTGTTTCTAGTTCTCTGTTCAAAATGTATGTCAAATGTGGTAACTCAGAGGATGGTACTCG GGTTTTTAACCAGCTTGGTTCAAAAGATTTGGTGTCTTGGACTTCCATTGTGTCGGGGTATGCAATGAGTGGAGAAACAT GGGAGGCAAGAAAACTTTTTGATGAGATGCCTGAACGTAATGTGATCTCGTGGAATGCTATGTTGGATGGATATATCAAA TCCTTTGAATGGAGCGAGGCATTAGATTTTGTTTATCTGATGCTTGGCTCAGTCAAAGATGTGGATCATGTCACCCTTAC TTTAATGTTAAAGGTGTCAGTTGGCCTTTTGGATCATGAAATGGGGAAACGGATTCATGGCTATGTCTATCGACGTGGTT TTCACTCGAACCTTATGGTCAGCAATGCCCTTCTTGACATGTATGGTAAATGTGGAAACTTGAATAGCGTGAGAGTGTTG TTTAGCCAGATGAGTAATTGGCGTGACAGAGTTTCTTGGAATGCTTTATTGGCTAGCTATGGTAATCATAATTTAAGTGA ACAAGCATTGACTATATTTTCAGGGATGCAGTGGGAGACCAAACCAACTAAGTATACATTTGGAACCCTTTTAGAAGCAT GTGCAGATACCTTTACTCTTCACCTAGGCAAACAAATTCATGGATTCATCATTAGACATGGATATCAAGTAGATACTATA GTCAGCACTGCATTGGTTTACATGTACTCTAAATGCCGTTGTCTTGAGTATGCTTTTGAGGTTCTGAAGGGGGCAGTTTC TAGGGATGTGATAATTTGGAACACCATAATTTTGGGGTGCTGTCACAATCATAAGGGTAAAGAGGCACTTGCACTTTTTC TGAAAATGGAAGAAGAAGGCGTCAAACCAGACCATGTGACCTTTGAGGGCATTCTGCGTGCTTGTGTTGAAGAAGGCCTT GTTGAGTTTGGCACACAATGCTTCAAGTCAATGAGCAATGAATACTATGTCCCACCTCGGCTGGAGCATTACGACTGCAT GATTGAACTCTACGGCCAGAATGGATGCATGGAAGAGCTGGAGAGTTTTATAAAGACAATGACAATAGATCCGACTATTC CAATGTTGAAAAGAGCCCTTGATGCTTGTAAGAAAAATGACTGCCCAAGATTGGGAGAATGGATTACAGACAAAATTAAT GAATTTCAATATTAA
Protein sequence (LotjaGi1g1v0271000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDARKMFHEIPHPNAVTWNVIVRRYLDAGDAKEAISMFSRMFLFAVSPLNYTFSNALVACSRVCAIVEGMQIHGVVVKS GLQEDNVVSSSLFKMYVKCGNSEDGTRVFNQLGSKDLVSWTSIVSGYAMSGETWEARKLFDEMPERNVISWNAMLDGYIK SFEWSEALDFVYLMLGSVKDVDHVTLTLMLKVSVGLLDHEMGKRIHGYVYRRGFHSNLMVSNALLDMYGKCGNLNSVRVL FSQMSNWRDRVSWNALLASYGNHNLSEQALTIFSGMQWETKPTKYTFGTLLEACADTFTLHLGKQIHGFIIRHGYQVDTI VSTALVYMYSKCRCLEYAFEVLKGAVSRDVIIWNTIILGCCHNHKGKEALALFLKMEEEGVKPDHVTFEGILRACVEEGL VEFGTQCFKSMSNEYYVPPRLEHYDCMIELYGQNGCMEELESFIKTMTIDPTIPMLKRALDACKKNDCPRLGEWITDKIN EFQY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 73 | 73 | 7.4E-92 | – | |
| Gene3D | 1 | 115 | 115 | 3.1E-19 | ||
| ProSiteProfiles | 15 | 49 | 35 | 10.435 | ||
| Pfam | 17 | 42 | 26 | 0.0013 | ||
| TIGRFAM | 17 | 42 | 26 | 0.0016 | ||
| PANTHER | 65 | 143 | 79 | 7.4E-92 | – | |
| ProSiteProfiles | 85 | 115 | 31 | 6.906 | ||
| ProSiteProfiles | 116 | 150 | 35 | 11.071 | ||
| Gene3D | 116 | 176 | 61 | 4.0E-7 | ||
| Pfam | 118 | 148 | 31 | 3.3E-7 | ||
| TIGRFAM | 118 | 148 | 31 | 2.2E-4 | ||
| TIGRFAM | 149 | 175 | 27 | 0.0013 | ||
| Pfam | 149 | 175 | 27 | 0.0016 | ||
| PANTHER | 150 | 303 | 154 | 7.4E-92 | – | |
| ProSiteProfiles | 151 | 177 | 27 | 5.097 | ||
| Gene3D | 180 | 299 | 120 | 1.9E-17 | ||
| ProSiteProfiles | 217 | 247 | 31 | 7.267 | ||
| Pfam | 222 | 245 | 24 | 0.1 | ||
| ProSiteProfiles | 249 | 279 | 31 | 7.837 | ||
| Pfam | 249 | 295 | 47 | 1.7E-7 | ||
| ProSiteProfiles | 283 | 317 | 35 | 5.821 | ||
| PANTHER | 293 | 474 | 182 | 7.4E-92 | – | |
| Gene3D | 300 | 402 | 103 | 1.4E-20 | ||
| ProSiteProfiles | 318 | 348 | 31 | 5.7 | ||
| Pfam | 349 | 395 | 47 | 1.3E-12 | ||
| ProSiteProfiles | 349 | 383 | 35 | 12.156 | ||
| TIGRFAM | 352 | 384 | 33 | 1.6E-7 | ||
| ProSiteProfiles | 384 | 418 | 35 | 8.035 | ||
| Gene3D | 403 | 483 | 81 | 2.1E-7 | ||
| ProSiteProfiles | 420 | 454 | 35 | 6.774 | ||
| Pfam | 423 | 447 | 25 | 0.14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0271000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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