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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0271100 |
| Transcript ID | LotjaGi1g1v0271100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G77010.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|O49287|PP127_ARATH Putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial; TrEMBL-Plants: tr|I1JYZ7|I1JYZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0271100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66157989..66161646) extracted from Lotus japonicus Gifu genome v1.2.
TTAATTGAAAAACGAAAAAATCAATCCTACTAGGCAAGTGTATATATAAAGGGAGAAAGAGAGACTTGGCGACGGGTAAT GGTTGGAGTTGTAGAAAATGAATGAGTATGGAGTTGCAAGGCATCGGCCGCACGCTTCGCGAAGGGAGACAACTCCACGT CTCCTTCCTCAAAACCGGCATTCTGAACTCCTCCCTCACCACCGCCAACCGCCTACTCCAATTCTACTCCCGCCGCGGAT GTCTCGACGACGCCACCCAACTGTTCGACGAAATGCCCCAGACAAACGCCTTCTCCTGGAACACTCTCATCGAAGCCCAC CTCCACTCCGGCCACAGAAACGAGTCTCTCCGCTTGTTCCACGCCATGCCCGAGAAGACACACTACTCCTGGAACATGCT GGTTTCCGCGTTCGCCAAGTCCGGTGACCTTCAACTTGCTCATTCCCTCTTTGACTCCATGCCATGTAAGAATGGCCTCG TCTGGAACACTATCATTCATGGCTATTCCAAACGTGGGCATCCTCGGAAAGCGCTTTCGCTATTCAAGACCATGAGTTTA GACCCCTTAGAGATGGTGCATTGTGACGCGGGCGTGTTGGCAACTGTTCTTGGTGCCTGTGCTGACTGTTTTGCTCTTAA TTGTGGGAAACAAGTCCATGCCCGTGTCATCGTTGATGGTCTTGAGCTTGAATTTGACAAGGTCTTGTGCAGCTCGCTTG TTAAGTTTTATGGGAAATGTGGTGACTTGGATAGCGCTGCTCGCGTTGCGGGTGTTGTGAAGGAAGTGGATGATTTCTCT TTATCTGCTTTGGTTTCAGGCTATGCAAATGCTGGAAAAATGAGAGAGGCAAGAAGAGTTTTTGATAGCAGGGTTGATCA ATGTGCTGTGCTGTGGAATTCTATTATTTCGGGTTATGTGTTCAATGGTGAGGAAATGGAAGCGCTGGCTCTCTTCAAGA GAATGCGTAGGAATGGGGTTTCGGGGGATGTATCAACCGTTGCGAACATTTTGAGTGCTGGGTGTAGCTTGCTTGTTGTT GAACTTGTAAAGCAAATGCATGCTCATGCTTGTAAAATTGGGGTGACTCATGACATTGTGGTTGCTAGTGCTCTGCTTGA TGCCTACTCAAAAAGTCAAGGCCCTCATGAAGCTTGCAAGTTTTTTGGTGAGCTCAAAGCCTATGATACGATTTTGCTTA ATACTATGATCACTGTGTATTCTAATTGCGGAAGAATTGAAGATGCAAAATGGATTTTTGACACAATGTCTAGTAAAACA TTAATTTCATGGAATTCAATCTTAGTGGGCCTCGCTAAGAATGCTTGTCCAAGTGAAGCAATTGATATTTTTTGCAGGAT GAATATGCTAGACTTAAAAATGGACAAGTTTAGCTTTGCCAGTGTTATCAGTGCCTGTGCCAGTAAATCATGCCTTGAAC TTGGGGAGCAGGTATTTGGTAAAGCTATCACCGTGGGGCTTGAATTTGACCATATCATTTCTACCTCACTTGTTGATTTC TATTGTAAATGTGGTTTTGTTGAGATAGGACGTAAAGGTTTTGATGGAATGATAAAAACTGATGAAGTCTCATGGAATAC AATATTGATGGGATATGCTACAAATGGATATGGAAGTGAAGCCCTGACCCTGTTTAGGGAAATGAGGTGTAGTGGTGTGA GGCCTTCTGCCATTACTTTTACTGCAGTCCTTTCAGCCTGTGATCATACTGGTCTAGTTGAAGAAGGAAGAAATTTGTTT GACACTATGAAGCATAACTATAATATAAATCCAGGGATTGAACATTACTCTTGCATGGTTGATCTTTATGCCCGAGCTGG TTGCTTAGGGGAAGCTATAGATCTTATTGAAGAGATGCCTTTTCAGGCTGATGCAAACATGTGGTTTTCAGTATTGAGAG GCTGCATAGCCCATGGAAATAGGACTATTGGCAAGATGGCTGCTGAGAAAATCATTCAGCTTGACCCTGAAAATCCAGGT GCTTATATACAATTATCTAACGTACTTGCGACTTCTGAGGACTGGGAAGGATCAGCACAAGTAAGAGAGCTGATGATAGA TAAGAATGTTCAGAAGATTCCTGGTTGCAGTTGGGCAGATTAGTGATGAGAAACTCTGCTGAGCTTCATCGCTTACAGGT GAAGGTTAATCAATCTAAGGAGGATAATTCCTGCATGAAAATAGCTTGAAAGTTGAAACCACCATTACCTTCCAGTTTTT CTGGACTATTTTTGGTATGGACTAACCAATTTTAAGAGAATGAACAGCTTAAAAGCATGTGGCTTTGTTGGGTTAAGTCT TTCTTGCTAACAGTGTTGTGAAAGCAGAGCAGGATGCTAGGAACACACTTTTTTCTCAAAACACATGCTATTCTCTGAAT GTAGGACTATCGGCAGCAAAAATTGGAAAACATATTGGCAACTGCACATTATATTCTTTCCTGTAGGCTAGGATGCACGG GTACCGGTACGGTACCCGGTGCGGGTACGGTACCGGGTACAGGGTACGGCATTTTCTGAAAATCCTAGGTGCGGGTACGC CCGGGTACGTTAATAAAGATATATGTATATTTAATTATTTATGTATATAGTGAAGTAAAAATAGAAAATATATGCTATAA TCAAACCTCTAACATAGACAATAGCACAGTGAGAGGACCTTCAAGTATAGCGGCGAAAAAACGGCATGCGGTGGTGAGAA AAAGGGCTTGCGGTGGTGAGAGGTTGAGAGCAGTTCACATACATGAGAGAGGAGAAGAGCCAAACAGTGAAACTGAACTG AGAACGTGAGAAATTGAGAGGTGAAATTTAGGGGTAAATAACCTAGGTATTATTTCCTTGCTGGAAAAAAATATTATTAA TTTTTTAATTAGTTAATTGGTAAAAAAATTACCCAATTTTTGCATCAAAGTACCCAATTTACGTACCCACACCGCACCGC CCGCGTACCCAATTAATGCTGCCGTACCCAATTTTTCCAGTGCGCACCGGAGCGTACCCACCGCGTACCCGGGCGTACCC GCATCCGGTGCGCACCCGGTACCGGTGCGCTGGCCAAATTCACGTACCCGTGCTTCAGAGCCTGTAGGTGACATAAATCT AGCCGGCCTACGAAAAAATGTTATGCTTTTTGCACCAAAGCATGAGGTTTAGTGCTCTTATAGAGTCCAGTTCGAAGATT CATGTAATGTAGTCAGTTAAGCTTGCAGTTATTGTTCACATCATCTGAAAAAGAATTTGAAATTTGATGGAGAAGGGATA CCATAGCAATCTTCTTCCTCTGCTAACAGCGATCTCCGGTTGTTATTGGGGGTGTAAAATTGGAGCACAAAATGGATGTA GTAGTCTGCACAACACATTTTTCTGTGCATCAGTTGCACAATCAGAAGACTAGCTGCTGATATGTCCCATTGAGGGGGTC ATTAGATGTTTGAATCCTCTCCAATAAGATTCTCCATAGCCTACCTCCTCCTTGTTTAACCATTGCTTCCTTTATTCAAT GACTAAGATTAATCTAAATGAAAAGTAAATTATCAAATTAAATATTTGATGGTGATTTGTATGGATGTAGAGGCTTGAGA GACAAGAAGAAATCTGAATCCAATTATTGATTGTTGACAACTAGTTCTTTCAAAAAAA
CDS sequence (LotjaGi1g1v0271100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTATGGAGTTGCAAGGCATCGGCCGCACGCTTCGCGAAGGGAGACAACTCCACGTCTCCTTCCTCAAAACCGGCAT TCTGAACTCCTCCCTCACCACCGCCAACCGCCTACTCCAATTCTACTCCCGCCGCGGATGTCTCGACGACGCCACCCAAC TGTTCGACGAAATGCCCCAGACAAACGCCTTCTCCTGGAACACTCTCATCGAAGCCCACCTCCACTCCGGCCACAGAAAC GAGTCTCTCCGCTTGTTCCACGCCATGCCCGAGAAGACACACTACTCCTGGAACATGCTGGTTTCCGCGTTCGCCAAGTC CGGTGACCTTCAACTTGCTCATTCCCTCTTTGACTCCATGCCATGTAAGAATGGCCTCGTCTGGAACACTATCATTCATG GCTATTCCAAACGTGGGCATCCTCGGAAAGCGCTTTCGCTATTCAAGACCATGAGTTTAGACCCCTTAGAGATGGTGCAT TGTGACGCGGGCGTGTTGGCAACTGTTCTTGGTGCCTGTGCTGACTGTTTTGCTCTTAATTGTGGGAAACAAGTCCATGC CCGTGTCATCGTTGATGGTCTTGAGCTTGAATTTGACAAGGTCTTGTGCAGCTCGCTTGTTAAGTTTTATGGGAAATGTG GTGACTTGGATAGCGCTGCTCGCGTTGCGGGTGTTGTGAAGGAAGTGGATGATTTCTCTTTATCTGCTTTGGTTTCAGGC TATGCAAATGCTGGAAAAATGAGAGAGGCAAGAAGAGTTTTTGATAGCAGGGTTGATCAATGTGCTGTGCTGTGGAATTC TATTATTTCGGGTTATGTGTTCAATGGTGAGGAAATGGAAGCGCTGGCTCTCTTCAAGAGAATGCGTAGGAATGGGGTTT CGGGGGATGTATCAACCGTTGCGAACATTTTGAGTGCTGGGTGTAGCTTGCTTGTTGTTGAACTTGTAAAGCAAATGCAT GCTCATGCTTGTAAAATTGGGGTGACTCATGACATTGTGGTTGCTAGTGCTCTGCTTGATGCCTACTCAAAAAGTCAAGG CCCTCATGAAGCTTGCAAGTTTTTTGGTGAGCTCAAAGCCTATGATACGATTTTGCTTAATACTATGATCACTGTGTATT CTAATTGCGGAAGAATTGAAGATGCAAAATGGATTTTTGACACAATGTCTAGTAAAACATTAATTTCATGGAATTCAATC TTAGTGGGCCTCGCTAAGAATGCTTGTCCAAGTGAAGCAATTGATATTTTTTGCAGGATGAATATGCTAGACTTAAAAAT GGACAAGTTTAGCTTTGCCAGTGTTATCAGTGCCTGTGCCAGTAAATCATGCCTTGAACTTGGGGAGCAGGTATTTGGTA AAGCTATCACCGTGGGGCTTGAATTTGACCATATCATTTCTACCTCACTTGTTGATTTCTATTGTAAATGTGGTTTTGTT GAGATAGGACGTAAAGGTTTTGATGGAATGATAAAAACTGATGAAGTCTCATGGAATACAATATTGATGGGATATGCTAC AAATGGATATGGAAGTGAAGCCCTGACCCTGTTTAGGGAAATGAGGTGTAGTGGTGTGAGGCCTTCTGCCATTACTTTTA CTGCAGTCCTTTCAGCCTGTGATCATACTGGTCTAGTTGAAGAAGGAAGAAATTTGTTTGACACTATGAAGCATAACTAT AATATAAATCCAGGGATTGAACATTACTCTTGCATGGTTGATCTTTATGCCCGAGCTGGTTGCTTAGGGGAAGCTATAGA TCTTATTGAAGAGATGCCTTTTCAGGCTGATGCAAACATGTGGTTTTCAGTATTGAGAGGCTGCATAGCCCATGGAAATA GGACTATTGGCAAGATGGCTGCTGAGAAAATCATTCAGCTTGACCCTGAAAATCCAGGTGCTTATATACAATTATCTAAC GTACTTGCGACTTCTGAGGACTGGGAAGGATCAGCACAAGTAAGAGAGCTGATGATAGATAAGAATGTTCAGAAGATTCC TGGTTGCAGTTGGGCAGATTAG
Protein sequence (LotjaGi1g1v0271100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMELQGIGRTLREGRQLHVSFLKTGILNSSLTTANRLLQFYSRRGCLDDATQLFDEMPQTNAFSWNTLIEAHLHSGHRN ESLRLFHAMPEKTHYSWNMLVSAFAKSGDLQLAHSLFDSMPCKNGLVWNTIIHGYSKRGHPRKALSLFKTMSLDPLEMVH CDAGVLATVLGACADCFALNCGKQVHARVIVDGLELEFDKVLCSSLVKFYGKCGDLDSAARVAGVVKEVDDFSLSALVSG YANAGKMREARRVFDSRVDQCAVLWNSIISGYVFNGEEMEALALFKRMRRNGVSGDVSTVANILSAGCSLLVVELVKQMH AHACKIGVTHDIVVASALLDAYSKSQGPHEACKFFGELKAYDTILLNTMITVYSNCGRIEDAKWIFDTMSSKTLISWNSI LVGLAKNACPSEAIDIFCRMNMLDLKMDKFSFASVISACASKSCLELGEQVFGKAITVGLEFDHIISTSLVDFYCKCGFV EIGRKGFDGMIKTDEVSWNTILMGYATNGYGSEALTLFREMRCSGVRPSAITFTAVLSACDHTGLVEEGRNLFDTMKHNY NINPGIEHYSCMVDLYARAGCLGEAIDLIEEMPFQADANMWFSVLRGCIAHGNRTIGKMAAEKIIQLDPENPGAYIQLSN VLATSEDWEGSAQVRELMIDKNVQKIPGCSWAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 10 | 127 | 118 | 1.4E-21 | ||
| PANTHER | 14 | 120 | 107 | 2.7E-120 | – | |
| ProSiteProfiles | 31 | 61 | 31 | 8.298 | ||
| Pfam | 34 | 59 | 26 | 0.017 | ||
| ProSiteProfiles | 62 | 96 | 35 | 9.043 | ||
| Pfam | 64 | 92 | 29 | 0.026 | ||
| TIGRFAM | 95 | 126 | 32 | 8.5E-6 | ||
| Pfam | 95 | 123 | 29 | 5.6E-5 | ||
| ProSiteProfiles | 97 | 123 | 27 | 6.303 | ||
| PANTHER | 97 | 222 | 126 | 2.7E-120 | – | |
| ProSiteProfiles | 124 | 158 | 35 | 9.832 | ||
| Pfam | 127 | 151 | 25 | 3.2E-6 | ||
| TIGRFAM | 127 | 152 | 26 | 5.9E-6 | ||
| Gene3D | 129 | 279 | 151 | 5.1E-20 | ||
| PANTHER | 165 | 255 | 91 | 2.7E-120 | – | |
| ProSiteProfiles | 199 | 229 | 31 | 6.412 | ||
| ProSiteProfiles | 230 | 260 | 31 | 8.254 | ||
| Pfam | 233 | 255 | 23 | 0.012 | ||
| PANTHER | 235 | 355 | 121 | 2.7E-120 | – | |
| ProSiteProfiles | 261 | 295 | 35 | 10.095 | ||
| Pfam | 262 | 308 | 47 | 9.8E-8 | ||
| TIGRFAM | 263 | 296 | 34 | 1.7E-5 | ||
| Gene3D | 307 | 440 | 134 | 3.6E-22 | ||
| ProSiteProfiles | 331 | 361 | 31 | 6.993 | ||
| Pfam | 336 | 359 | 24 | 1.2 | ||
| PANTHER | 336 | 455 | 120 | 2.7E-120 | – | |
| ProSiteProfiles | 362 | 396 | 35 | 9.602 | ||
| Pfam | 367 | 392 | 26 | 5.0E-4 | ||
| Pfam | 395 | 421 | 27 | 0.0027 | ||
| TIGRFAM | 395 | 425 | 31 | 0.002 | ||
| ProSiteProfiles | 397 | 427 | 31 | 5.678 | ||
| ProSiteProfiles | 428 | 462 | 35 | 7.169 | ||
| Gene3D | 441 | 541 | 101 | 2.1E-20 | ||
| PANTHER | 447 | 658 | 212 | 2.7E-120 | – | |
| ProSiteProfiles | 463 | 493 | 31 | 6.401 | ||
| ProSiteProfiles | 494 | 528 | 35 | 12.299 | ||
| Pfam | 494 | 540 | 47 | 4.5E-12 | ||
| TIGRFAM | 496 | 529 | 34 | 5.9E-7 | ||
| ProSiteProfiles | 529 | 559 | 31 | 8.024 | ||
| Gene3D | 542 | 630 | 89 | 5.1E-13 | ||
| ProSiteProfiles | 565 | 595 | 31 | 7.75 | ||
| Pfam | 568 | 592 | 25 | 2.8E-4 | ||
| TIGRFAM | 569 | 592 | 24 | 9.4E-4 | ||
| ProSiteProfiles | 631 | 665 | 35 | 6.095 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0271100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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