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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0271500 |
| Transcript ID | LotjaGi1g1v0271500.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT1G21410.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A; TrEMBL-Plants: tr|A0A0B2SHG6|A0A0B2SHG6_GLYSO F-box protein SKP2B; Found in the gene: LotjaGi1g1v0271500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66291805..66297253) extracted from Lotus japonicus Gifu genome v1.2.
ATCCATATGAACATGATTCAGTAAATTTGTGAACGATCAAAGTCGGCAAGTGTCTTTAATCTTTTTTTGCGGGAATGTAA TATGGTGACAGATACTTTAACCAAATACGCAACCTAAGTTAACGGTGGGCAAGTCTGGAAACTTCCTTCTTCCGATGTCA TACCTCTCATGGGACAAGGCGTCCTTATTTCTTGTTTTTCTAAAAAACAAAAACAAAAGTTTATCTCAAATCATATTGAA CAAATCTTCACGCAAAGAAACACTAGGCAATTCCGGATTTTGTTAACTTATGTTATGAACGGTTTCGATTATGGACAACC AAAAACTTCTAGCACACACACATATCTCTCTCCAATCTCCATTCCATCATCACCTTGATTCCATTTCCTCTTCAATCCCC TCCCTTAATTTTCTTTTTGTTACCTTTTGGATTCCAATCATCAACAATTTTCAATTTTCAGATAAAGAAAGAAATAAAAA GAGTTTCCTTTCTTTCTTTCCCTCTTTATGCGTTTTCCTTTTCGTGGTTTTCTAGTCTTATCGATTCTGACCTCCATTCT CATCAACGTATGCTACTTTACTTGGGACCCACTTCAGCTGTCAAATCCCCATTGATCACACGTACACGTGTCACCGTAAC GTGATACTTGCTCTTTCTCTGTGACTCTTCACGCTATTTAGACCCTCTTCTTCACAAAACCCCAATTTCAGAGAAGCACA ACCACGCTTCTCTGTTACCAAAACCAAAACCAAAACCTCTGTTTCTTCCTCTCTTAGCTTCTCTTCTGGTAATCATCACT TTCATTTTTGTTTTTTTGTTTTTTTTGTGTATTCATGGAATCATCTTGCCTTTGATCAGAAACAGAGAAAACAAAAGTTT TGTTTTTCATGCTTGATTTTGTTTGCTTGATTTTTTCCCCTTTTTCCTAATGATTTTGTATGTATGCTTGATTTCTTCCT CTTTTTTTTTTTTACTTTATGCATGCCGAATTTAATAAAAAGAGTCTTTTTTTTTTTCAAAATTTTGGTGTTTTATTCTT ATAACCTGGTGTGCTCTGTTTGATTTTTTCTGCTTTGCCCCTTGTGTAAAGTTTGAAACTTTCTGCGAAGACTTGATCAT GTAATTGAGAAGCGTTTGATTTGATGGGTATTTCTGTAATGTTTAGAATACTTGATTTGAGTTTAGAGACCCTTTTTTTC TTATTTATTTTATTGTAGGATTATTATTGTATTTATCTGTATGTTGCTTTCGTTGCAAATTGCTTTGGGGGGCCTTGGCC ACGTTGGATTTTTGAATTTTTCTTGGTATGTGGTGGTGGTGATTATTGTTTTGTTTTTTCATGACATGATCAGGTTTCAT TTTCCCACAGCTGTGAAATTGATGGTTGTTGTTTGGCTGAAAGTCTGAAATGGTTGGCAAGGATAACCTGAGGACTGAGG ACCTGAACCTGAACTTGTCCTTTGAGAAGCTGATGATGGTTGCTGGGAACAGGAACGGTGGTAAAGGAGGAGGGGATATG GTGAAGGGTGGGGTGATCAATGAATGGAAGGATATTCCTGTGGAGCTTTTGATGCAGATTCTGTCGCTCGTGGATGATCA AACCATGATCCGAGCTTTTGGAGTTTGTCGTGGCTGGAGAGATGCAATTTCCTTTGGCCTCGCCCGGTTATCGCTTTCAT GGTATATTGTTTTTCTCTCTTGAGGCTTATGTATGTTTTACTTGTTGGCCATGAGGACTGTTTTTCTGTGTTTTTTTTTT CTCCATTTGGGGATTCAATTGAAGTGAAGTTTTCTTTGTTCCTTTTTTGCTTATTTCAAGTACCATATAATTTGATCCTA GAGTTGAGTTTTAAACCTACGATGCATGGGTACTCTATTTTGGCTGTTGTACCACGTAGCGGTACTCCTTGGGTACTTGA AATTACGCTATCAAAATAATATAATTTTTCAAACCAAGAAGTTTAGATACAATTTGGGGAGTTTTGTGGTACCACTTGGG TAGCTTTTAGGTATTTCTTGGGTACATATTACCTAAAACTAAATTGTTTTAATAACTTTTTATTCTTTTATATATACACA AATGAAATTCCTACTTCTATCAAAATAAAACCCTAAATAATCTACCGGTATCTTCAATATGCATCAATCAATTACTCAAT TTAAGTTTTCTTTCTTGCATCATGTATGCATCTCAATTTCTCCAATTTGCTTTGTTAGTTTTGACAACAATGTAATCTTC GAATATATATAATATAAGCGTACCAGGACCATAGTTTTCTAAAAGATCGCGTAAGTCGTACCTGTTCCCGGTACCTTACA TCCATGCAACTTAGCTAGCAACCCATTTGGAATTAATCTATTTGCTTGATGTCCCCTGCATCTTTGGCATTGAGATCAAT TGCCTCATGTTTTAGGGGAATCGGATAATCACGTTTAATCATTTTTCAGTACAGCTGGTATTTTCTGATGAGAATTTAGG TTAAACAAGGGGCTTTAACTATGCTAAGTCAAGTTAGTTGAAGTCTTGTGTTATTTGCTGTGCTGTCGTTGAGATCATAT TTTTACAGCTAAGTTGTAATAACGAAGAATACATGCGATAAGTAAGCAGTTTGAACCTTGTAGCTTTTGGTTACAATCCT CCCCTCCCCCAACAGATAATCTTACAATTTGAAAGATAGAAATGCCTTTTTTAGTTTCTCCGTTGAATTTCCGAAGTTAG TTTCCCTAATAACCACATTGCTGGAATAAATGTAAGAATGTGTTTGTTAGGAGGTATCTTAAAACACTCCCTGGAAGGTA AGTGCGGGAGTGTTGTATGGGTATTTGGTACAAATTTTATAAAAATATTCCCGGGCATAATTTATTCCCAGTAAAGTTGA TTGCAACAATTAGCGAAGTTTCTATTCCCAAGGTATACCAGTTTAATTTGAAAACCCTTAGTTAATATTGTAATGTTTGT CGGAATCCTGGGGTATACCAGTTTCAATTTTGAAGTCCATTTTGTATGGTGACTGATATCCATTTCTTAAAATTCCTTGA TTTGCCCCTAACTTTGGCATTCTTCTAAGAGAGCTTCATAGAAGTTGTGGTTTTGAAGGATATTTATTTTGGTTCAATGG CATGAAGCTGATGTGTGCTTTTTGCATATTGTGAAGTTCATAGAGTGTAAGAATAACAGGATTATGTAATTCCTCACTTC AGGTGTAGCAAGAACATGAACAACTTGGTCCTGTCTCTTGTTCCCAAGTTCAAAAAATTGGAAACTCTAATCCTTCGTCA AGACAAGGCTCAACTGGAGGATAGTACTGTTGAGACTATTGCAAATTGCTGTAGAGACCTGCAGATCCTGGACCTCAGCA AAAGTTTCAAACTTACGGATCGTTCGCTGTATGCTATAGCCCATGGTTGTGGTGACCTTATAAAACTAAACATCAGTGGG TGTTCAGCATTTAGCGACAATGCTTTGGCTTACCTTGCTAGTTTCTGCAGAAGATTAAAAGTTCTGAATCTCTGTGGATG TGTTCAAGCTGCATCTGATACTGCATTGCAGGTATTGATGTGATATACAGTATAGTGGTTGTTTTTCATAGTAATATGAA TTAAGATGTCTATGAATTATAACCCATTGACTAAATGATCAACAGGCTGTTGGACAATACTGCAATCAGTTACAGTCTTT GAACCTTGGATGGTGTGATAATGTTTGTGATGTTGGAGTCATGAGTTTAGCATATGGGTGTCCTGATCTTAGATCAATTG ACCTGTGTGGCTGCATTCGTATAACAGGTATTTTATTTGAATTTCCAGTAGTTTAATGATGGAACTCTTTTGGCAAAGTC ACTTGTCATATTTTTGTTACACTGCAAAATGTGTTTTGTGAAATTGCTAAAGCCACAGATCCTGTCATGCAATGGAGGTG GTTAGAATAAATATTAGTGTTGTGGGGTCCAACATTGACTAGAGATTTGGCCAAATAAGACTTTATAAAGGGTAGACCAA CTGTCCTGAGGTAGCTTTTGGGTAGAGTTTGACCTAAATTAAATTCTAAAACGGTTCCAGAACCTATCGTAAGATCTGTT TGTTGGGCCACCCTAAATGCGATAACTACAGATGTCTAGTCTTGCATACATCATGTTTTAGCTGTCCGGACCATGTGACA AAATAAGACCTTATAAAAGGTAGCAATTCTCACCCGTCACCCCTAGGCTAGTTTTTGGGGTAGTTATACATAACTTGTAA GACTTTGAAAGTGAAAGAATACACATAAAATAGTAAGAAAAAGAATAAATTGGAAATTTGATGTCTACAAGAAAGAAATA AGAATATCTATTGTAATGCACTAGCTCAAACTCATCTAATTTGGGTAGTCATTATAGCTTTTCCACTTGGTTTTTATGCA TTATGTCTCGGTGATCAGTACAATTTTAACCTTTCTACGTCTATTGCAGATGACAGTGTGATTGCTTTGGCAAACAATTG CCCTCACTTGAGGTCTCTTGGATTGTATTACTGTCAAAACATCACAGACAGGGCAATGTACTGCTTGGCACAGAGCAAAG TGAATAACAGGATGTGGGGAAATGTGAAAGGAGCAAATGATGAGGAAGGCCTAAGGACTTTGAACATTAGCCAATGCACT GCACTCACCCCTTCAGCTGTTCAAGCAGTCTGTGACTCATTCCCTTCTCTCCACACATGCCCGGTGAGACACTCACTTAT CATGAGTGGCTGTCTCAGTTTGATGTCTGTGCATTGTGCTTGCGCCGGCCATGCGCATCGTGCAATCACCAATTTCCCTC ATCCTGCTCACTGAAGGCATGGTTTTTTCCCTACACTTCGAGGAAGTGCCCTTTGATGGGCTCAGAGAAGTGATATAATT CCCCTCTTGTGGATATGTTTGTGTTGGACTATATAAGAGACTTTTGGTACAAATGAGCTGCCATTTGGTGTTGAATTATG CAAGTTATGCACAACATTTTGAACCTGTCTCTTTCTGTTTTAATCTTGTAATTGTGAAGTTTAAGACATCTTGGCCGCAA AAACTGCTTGCTCCTAAGTCATCGGAGTATAAATTCATAGAAAGACGTTGACTTATGCCCATGATATTTTCTGAATTTGT TGATATTTTTATGGAGGAAATTAGGATAGAGTTTGCTCAACTAAGTAAGAAGATGCTTAGCCATAGATGTACAGGTTAAA AGGAAAAAGGAAAAACCTCATTTGCAGGATGTTTAAAAACCTGGTGTCTTAAGAACTCATCTTTCATATTTTCGAATTTT TGGTGTATATATATATTTATGGGATTTTTGAAATATGTAAGAAATTGGAAAAATTAAAATAAGGTTTTCGAGAATTTGGA AGATGACTTACCAGGTTTTATATCCCTATAATGTTGATGTTTATTGTCGGGTTTCTAAAACATCTTGTAGTGTAAAGTTG TTATTTATA
CDS sequence (LotjaGi1g1v0271500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGCAAGGATAACCTGAGGACTGAGGACCTGAACCTGAACTTGTCCTTTGAGAAGCTGATGATGGTTGCTGGGAA CAGGAACGGTGGTAAAGGAGGAGGGGATATGGTGAAGGGTGGGGTGATCAATGAATGGAAGGATATTCCTGTGGAGCTTT TGATGCAGATTCTGTCGCTCGTGGATGATCAAACCATGATCCGAGCTTTTGGAGTTTGTCGTGGCTGGAGAGATGCAATT TCCTTTGGCCTCGCCCGGTTATCGCTTTCATGGTGTAGCAAGAACATGAACAACTTGGTCCTGTCTCTTGTTCCCAAGTT CAAAAAATTGGAAACTCTAATCCTTCGTCAAGACAAGGCTCAACTGGAGGATAGTACTGTTGAGACTATTGCAAATTGCT GTAGAGACCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAACTTACGGATCGTTCGCTGTATGCTATAGCCCATGGTTGT GGTGACCTTATAAAACTAAACATCAGTGGGTGTTCAGCATTTAGCGACAATGCTTTGGCTTACCTTGCTAGTTTCTGCAG AAGATTAAAAGTTCTGAATCTCTGTGGATGTGTTCAAGCTGCATCTGATACTGCATTGCAGGCTGTTGGACAATACTGCA ATCAGTTACAGTCTTTGAACCTTGGATGGTGTGATAATGTTTGTGATGTTGGAGTCATGAGTTTAGCATATGGGTGTCCT GATCTTAGATCAATTGACCTGTGTGGCTGCATTCGTATAACAGATGACAGTGTGATTGCTTTGGCAAACAATTGCCCTCA CTTGAGGTCTCTTGGATTGTATTACTGTCAAAACATCACAGACAGGGCAATGTACTGCTTGGCACAGAGCAAAGTGAATA ACAGGATGTGGGGAAATGTGAAAGGAGCAAATGATGAGGAAGGCCTAAGGACTTTGAACATTAGCCAATGCACTGCACTC ACCCCTTCAGCTGTTCAAGCAGTCTGTGACTCATTCCCTTCTCTCCACACATGCCCGGTGAGACACTCACTTATCATGAG TGGCTGTCTCAGTTTGATGTCTGTGCATTGTGCTTGCGCCGGCCATGCGCATCGTGCAATCACCAATTTCCCTCATCCTG CTCACTGA
Protein sequence (LotjaGi1g1v0271500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGKDNLRTEDLNLNLSFEKLMMVAGNRNGGKGGGDMVKGGVINEWKDIPVELLMQILSLVDDQTMIRAFGVCRGWRDAI SFGLARLSLSWCSKNMNNLVLSLVPKFKKLETLILRQDKAQLEDSTVETIANCCRDLQILDLSKSFKLTDRSLYAIAHGC GDLIKLNISGCSAFSDNALAYLASFCRRLKVLNLCGCVQAASDTALQAVGQYCNQLQSLNLGWCDNVCDVGVMSLAYGCP DLRSIDLCGCIRITDDSVIALANNCPHLRSLGLYYCQNITDRAMYCLAQSKVNNRMWGNVKGANDEEGLRTLNISQCTAL TPSAVQAVCDSFPSLHTCPVRHSLIMSGCLSLMSVHCACAGHAHRAITNFPHPAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 375 | 343 | 4.7E-186 | – | |
| PANTHER | 33 | 375 | 343 | 4.7E-186 | – | |
| SUPERFAMILY | 45 | 82 | 38 | 7.46E-8 | ||
| Pfam | 47 | 80 | 34 | 9.1E-7 | ||
| Gene3D | 61 | 305 | 245 | 1.4E-46 | ||
| SUPERFAMILY | 83 | 333 | 251 | 7.06E-36 | – | |
| SMART | 107 | 133 | 27 | 220.0 | ||
| SMART | 134 | 159 | 26 | 3.1E-4 | ||
| SMART | 160 | 185 | 26 | 0.0094 | ||
| SMART | 186 | 212 | 27 | 1.6 | ||
| Pfam | 213 | 236 | 24 | 0.0019 | ||
| SMART | 213 | 238 | 26 | 1.7E-4 | ||
| SMART | 239 | 264 | 26 | 1.3E-6 | ||
| Pfam | 264 | 288 | 25 | 0.41 | ||
| SMART | 265 | 290 | 26 | 2.0E-8 | ||
| SMART | 306 | 331 | 26 | 0.043 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0271500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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