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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0271500 |
| Transcript ID | LotjaGi1g1v0271500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT1G21410.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A; TrEMBL-Plants: tr|A0A0B2SHG6|A0A0B2SHG6_GLYSO F-box protein SKP2B; Found in the gene: LotjaGi1g1v0271500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66293138..66296618) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTCATGACATGATCAGGTTTCATTTTCCCACAGCTGTGAAATTGATGGTTGTTGTTTGGCTGAAAGTCTGAAATGG TTGGCAAGGATAACCTGAGGACTGAGGACCTGAACCTGAACTTGTCCTTTGAGAAGCTGATGATGGTTGCTGGGAACAGG AACGGTGGTAAAGGAGGAGGGGATATGGTGAAGGGTGGGGTGATCAATGAATGGAAGGATATTCCTGTGGAGCTTTTGAT GCAGATTCTGTCGCTCGTGGATGATCAAACCATGATCCGAGCTTTTGGAGTTTGTCGTGGCTGGAGAGATGCAATTTCCT TTGGCCTCGCCCGGTTATCGCTTTCATGGTATATTGTTTTTCTCTCTTGAGGCTTATGTATGTTTTACTTGTTGGCCATG AGGACTGTTTTTCTGTGTTTTTTTTTTCTCCATTTGGGGATTCAATTGAAGTGAAGTTTTCTTTGTTCCTTTTTTGCTTA TTTCAAGTACCATATAATTTGATCCTAGAGTTGAGTTTTAAACCTACGATGCATGGGTACTCTATTTTGGCTGTTGTACC ACGTAGCGGTACTCCTTGGGTACTTGAAATTACGCTATCAAAATAATATAATTTTTCAAACCAAGAAGTTTAGATACAAT TTGGGGAGTTTTGTGGTACCACTTGGGTAGCTTTTAGGTATTTCTTGGGTACATATTACCTAAAACTAAATTGTTTTAAT AACTTTTTATTCTTTTATATATACACAAATGAAATTCCTACTTCTATCAAAATAAAACCCTAAATAATCTACCGGTATCT TCAATATGCATCAATCAATTACTCAATTTAAGTTTTCTTTCTTGCATCATGTATGCATCTCAATTTCTCCAATTTGCTTT GTTAGTTTTGACAACAATGTAATCTTCGAATATATATAATATAAGCGTACCAGGACCATAGTTTTCTAAAAGATCGCGTA AGTCGTACCTGTTCCCGGTACCTTACATCCATGCAACTTAGCTAGCAACCCATTTGGAATTAATCTATTTGCTTGATGTC CCCTGCATCTTTGGCATTGAGATCAATTGCCTCATGTTTTAGGGGAATCGGATAATCACGTTTAATCATTTTTCAGTACA GCTGGTATTTTCTGATGAGAATTTAGGTTAAACAAGGGGCTTTAACTATGCTAAGTCAAGTTAGTTGAAGTCTTGTGTTA TTTGCTGTGCTGTCGTTGAGATCATATTTTTACAGCTAAGTTGTAATAACGAAGAATACATGCGATAAGTAAGCAGTTTG AACCTTGTAGCTTTTGGTTACAATCCTCCCCTCCCCCAACAGATAATCTTACAATTTGAAAGATAGAAATGCCTTTTTTA GTTTCTCCGTTGAATTTCCGAAGTTAGTTTCCCTAATAACCACATTGCTGGAATAAATGTAAGAATGTGTTTGTTAGGAG GTATCTTAAAACACTCCCTGGAAGGTAAGTGCGGGAGTGTTGTATGGGTATTTGGTACAAATTTTATAAAAATATTCCCG GGCATAATTTATTCCCAGTAAAGTTGATTGCAACAATTAGCGAAGTTTCTATTCCCAAGGTATACCAGTTTAATTTGAAA ACCCTTAGTTAATATTGTAATGTTTGTCGGAATCCTGGGGTATACCAGTTTCAATTTTGAAGTCCATTTTGTATGGTGAC TGATATCCATTTCTTAAAATTCCTTGATTTGCCCCTAACTTTGGCATTCTTCTAAGAGAGCTTCATAGAAGTTGTGGTTT TGAAGGATATTTATTTTGGTTCAATGGCATGAAGCTGATGTGTGCTTTTTGCATATTGTGAAGTTCATAGAGTGTAAGAA TAACAGGATTATGTAATTCCTCACTTCAGGTGTAGCAAGAACATGAACAACTTGGTCCTGTCTCTTGTTCCCAAGTTCAA AAAATTGGAAACTCTAATCCTTCGTCAAGACAAGGCTCAACTGGAGGATAGTACTGTTGAGACTATTGCAAATTGCTGTA GAGACCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAACTTACGGATCGTTCGCTGTATGCTATAGCCCATGGTTGTGGT GACCTTATAAAACTAAACATCAGTGGGTGTTCAGCATTTAGCGACAATGCTTTGGCTTACCTTGCTAGTTTCTGCAGAAG ATTAAAAGTTCTGAATCTCTGTGGATGTGTTCAAGCTGCATCTGATACTGCATTGCAGGTATTGATGTGATATACAGTAT AGTGGTTGTTTTTCATAGTAATATGAATTAAGATGTCTATGAATTATAACCCATTGACTAAATGATCAACAGGCTGTTGG ACAATACTGCAATCAGTTACAGTCTTTGAACCTTGGATGGTGTGATAATGTTTGTGATGTTGGAGTCATGAGTTTAGCAT ATGGGTGTCCTGATCTTAGATCAATTGACCTGTGTGGCTGCATTCGTATAACAGGTATTTTATTTGAATTTCCAGTAGTT TAATGATGGAACTCTTTTGGCAAAGTCACTTGTCATATTTTTGTTACACTGCAAAATGTGTTTTGTGAAATTGCTAAAGC CACAGATCCTGTCATGCAATGGAGGTGGTTAGAATAAATATTAGTGTTGTGGGGTCCAACATTGACTAGAGATTTGGCCA AATAAGACTTTATAAAGGGTAGACCAACTGTCCTGAGGTAGCTTTTGGGTAGAGTTTGACCTAAATTAAATTCTAAAACG GTTCCAGAACCTATCGTAAGATCTGTTTGTTGGGCCACCCTAAATGCGATAACTACAGATGTCTAGTCTTGCATACATCA TGTTTTAGCTGTCCGGACCATGTGACAAAATAAGACCTTATAAAAGGTAGCAATTCTCACCCGTCACCCCTAGGCTAGTT TTTGGGGTAGTTATACATAACTTGTAAGACTTTGAAAGTGAAAGAATACACATAAAATAGTAAGAAAAAGAATAAATTGG AAATTTGATGTCTACAAGAAAGAAATAAGAATATCTATTGTAATGCACTAGCTCAAACTCATCTAATTTGGGTAGTCATT ATAGCTTTTCCACTTGGTTTTTATGCATTATGTCTCGGTGATCAGTACAATTTTAACCTTTCTACGTCTATTGCAGATGA CAGTGTGATTGCTTTGGCAAACAATTGCCCTCACTTGAGGTCTCTTGGATTGTATTACTGTCAAAACATCACAGACAGGG CAATGTACTGCTTGGCACAGAGCAAAGTGAATAACAGGATGTGGGGAAATGTGAAAGGAGCAAATGATGAGGAAGGCCTA AGGACTTTGAACATTAGCCAATGCACTGCACTCACCCCTTCAGCTGTTCAAGCAGTCTGTGACTCATTCCCTTCTCTCCA CACATGCCCGGTGAGACACTCACTTATCATGAGTGGCTGTCTCAGTTTGATGTCTGTGCATTGTGCTTGCGCCGGCCATG CGCATCGTGCAATCACCAATTTCCCTCATCCTGCTCACTGA
CDS sequence (LotjaGi1g1v0271500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGCAAGGATAACCTGAGGACTGAGGACCTGAACCTGAACTTGTCCTTTGAGAAGCTGATGATGGTTGCTGGGAA CAGGAACGGTGGTAAAGGAGGAGGGGATATGGTGAAGGGTGGGGTGATCAATGAATGGAAGGATATTCCTGTGGAGCTTT TGATGCAGATTCTGTCGCTCGTGGATGATCAAACCATGATCCGAGCTTTTGGAGTTTGTCGTGGCTGGAGAGATGCAATT TCCTTTGGCCTCGCCCGGTGTAGCAAGAACATGAACAACTTGGTCCTGTCTCTTGTTCCCAAGTTCAAAAAATTGGAAAC TCTAATCCTTCGTCAAGACAAGGCTCAACTGGAGGATAGTACTGTTGAGACTATTGCAAATTGCTGTAGAGACCTGCAGA TCCTGGACCTCAGCAAAAGTTTCAAACTTACGGATCGTTCGCTGTATGCTATAGCCCATGGTTGTGGTGACCTTATAAAA CTAAACATCAGTGGGTGTTCAGCATTTAGCGACAATGCTTTGGCTTACCTTGCTAGTTTCTGCAGAAGATTAAAAGTTCT GAATCTCTGTGGATGTGTTCAAGCTGCATCTGATACTGCATTGCAGGCTGTTGGACAATACTGCAATCAGTTACAGTCTT TGAACCTTGGATGGTGTGATAATGTTTGTGATGTTGGAGTCATGAGTTTAGCATATGGGTGTCCTGATCTTAGATCAATT GACCTGTGTGGCTGCATTCGTATAACAGATGACAGTGTGATTGCTTTGGCAAACAATTGCCCTCACTTGAGGTCTCTTGG ATTGTATTACTGTCAAAACATCACAGACAGGGCAATGTACTGCTTGGCACAGAGCAAAGTGAATAACAGGATGTGGGGAA ATGTGAAAGGAGCAAATGATGAGGAAGGCCTAAGGACTTTGAACATTAGCCAATGCACTGCACTCACCCCTTCAGCTGTT CAAGCAGTCTGTGACTCATTCCCTTCTCTCCACACATGCCCGGTGAGACACTCACTTATCATGAGTGGCTGTCTCAGTTT GATGTCTGTGCATTGTGCTTGCGCCGGCCATGCGCATCGTGCAATCACCAATTTCCCTCATCCTGCTCACTGA
Protein sequence (LotjaGi1g1v0271500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGKDNLRTEDLNLNLSFEKLMMVAGNRNGGKGGGDMVKGGVINEWKDIPVELLMQILSLVDDQTMIRAFGVCRGWRDAI SFGLARCSKNMNNLVLSLVPKFKKLETLILRQDKAQLEDSTVETIANCCRDLQILDLSKSFKLTDRSLYAIAHGCGDLIK LNISGCSAFSDNALAYLASFCRRLKVLNLCGCVQAASDTALQAVGQYCNQLQSLNLGWCDNVCDVGVMSLAYGCPDLRSI DLCGCIRITDDSVIALANNCPHLRSLGLYYCQNITDRAMYCLAQSKVNNRMWGNVKGANDEEGLRTLNISQCTALTPSAV QAVCDSFPSLHTCPVRHSLIMSGCLSLMSVHCACAGHAHRAITNFPHPAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 370 | 338 | 2.8E-180 | – | |
| PANTHER | 33 | 370 | 338 | 2.8E-180 | – | |
| SUPERFAMILY | 45 | 81 | 37 | 1.11E-7 | ||
| Gene3D | 46 | 81 | 36 | 2.4E-6 | – | |
| Pfam | 47 | 80 | 34 | 9.3E-7 | ||
| SUPERFAMILY | 82 | 328 | 247 | 6.28E-35 | – | |
| Gene3D | 82 | 302 | 221 | 1.7E-44 | ||
| SMART | 102 | 128 | 27 | 220.0 | ||
| SMART | 129 | 154 | 26 | 3.1E-4 | ||
| SMART | 155 | 180 | 26 | 0.0094 | ||
| SMART | 181 | 207 | 27 | 1.6 | ||
| SMART | 208 | 233 | 26 | 1.7E-4 | ||
| Pfam | 208 | 231 | 24 | 0.0018 | ||
| SMART | 234 | 259 | 26 | 1.3E-6 | ||
| Pfam | 259 | 283 | 25 | 0.4 | ||
| SMART | 260 | 285 | 26 | 2.0E-8 | ||
| SMART | 301 | 326 | 26 | 0.043 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0271500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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