Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0271500 |
| Transcript ID | LotjaGi1g1v0271500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box family protein; TAIR: AT1G21410.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A; TrEMBL-Plants: tr|A0A0B2SHG6|A0A0B2SHG6_GLYSO F-box protein SKP2B; Found in the gene: LotjaGi1g1v0271500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:66293193..66296618) extracted from Lotus japonicus Gifu genome v1.2.
TTGTTTGGCTGAAAGTCTGAAATGGTTGGCAAGGATAACCTGAGGACTGAGGACCTGAACCTGAACTTGTCCTTTGAGAA GCTGATGATGGTTGCTGGGAACAGGAACGGTGGTAAAGGAGGAGGGGATATGGTGAAGGGTGGGGTGATCAATGAATGGA AGGATATTCCTGTGGAGCTTTTGATGCAGATTCTGTCGCTCGTGGATGATCAAACCATGATCCGAGCTTTTGGAGTTTGT CGTGGCTGGAGAGATGCAATTTCCTTTGGCCTCGCCCGGTTATCGCTTTCATGGTATATTGTTTTTCTCTCTTGAGGCTT ATGTATGTTTTACTTGTTGGCCATGAGGACTGTTTTTCTGTGTTTTTTTTTTCTCCATTTGGGGATTCAATTGAAGTGAA GTTTTCTTTGTTCCTTTTTTGCTTATTTCAAGTACCATATAATTTGATCCTAGAGTTGAGTTTTAAACCTACGATGCATG GGTACTCTATTTTGGCTGTTGTACCACGTAGCGGTACTCCTTGGGTACTTGAAATTACGCTATCAAAATAATATAATTTT TCAAACCAAGAAGTTTAGATACAATTTGGGGAGTTTTGTGGTACCACTTGGGTAGCTTTTAGGTATTTCTTGGGTACATA TTACCTAAAACTAAATTGTTTTAATAACTTTTTATTCTTTTATATATACACAAATGAAATTCCTACTTCTATCAAAATAA AACCCTAAATAATCTACCGGTATCTTCAATATGCATCAATCAATTACTCAATTTAAGTTTTCTTTCTTGCATCATGTATG CATCTCAATTTCTCCAATTTGCTTTGTTAGTTTTGACAACAATGTAATCTTCGAATATATATAATATAAGCGTACCAGGA CCATAGTTTTCTAAAAGATCGCGTAAGTCGTACCTGTTCCCGGTACCTTACATCCATGCAACTTAGCTAGCAACCCATTT GGAATTAATCTATTTGCTTGATGTCCCCTGCATCTTTGGCATTGAGATCAATTGCCTCATGTTTTAGGGGAATCGGATAA TCACGTTTAATCATTTTTCAGTACAGCTGGTATTTTCTGATGAGAATTTAGGTTAAACAAGGGGCTTTAACTATGCTAAG TCAAGTTAGTTGAAGTCTTGTGTTATTTGCTGTGCTGTCGTTGAGATCATATTTTTACAGCTAAGTTGTAATAACGAAGA ATACATGCGATAAGTAAGCAGTTTGAACCTTGTAGCTTTTGGTTACAATCCTCCCCTCCCCCAACAGATAATCTTACAAT TTGAAAGATAGAAATGCCTTTTTTAGTTTCTCCGTTGAATTTCCGAAGTTAGTTTCCCTAATAACCACATTGCTGGAATA AATGTAAGAATGTGTTTGTTAGGAGGTATCTTAAAACACTCCCTGGAAGGTAAGTGCGGGAGTGTTGTATGGGTATTTGG TACAAATTTTATAAAAATATTCCCGGGCATAATTTATTCCCAGTAAAGTTGATTGCAACAATTAGCGAAGTTTCTATTCC CAAGGTATACCAGTTTAATTTGAAAACCCTTAGTTAATATTGTAATGTTTGTCGGAATCCTGGGGTATACCAGTTTCAAT TTTGAAGTCCATTTTGTATGGTGACTGATATCCATTTCTTAAAATTCCTTGATTTGCCCCTAACTTTGGCATTCTTCTAA GAGAGCTTCATAGAAGTTGTGGTTTTGAAGGATATTTATTTTGGTTCAATGGCATGAAGCTGATGTGTGCTTTTTGCATA TTGTGAAGTTCATAGAGTGTAAGAATAACAGGATTATGTAATTCCTCACTTCAGGTGTAGCAAGAACATGAACAACTTGG TCCTGTCTCTTGTTCCCAAGTTCAAAAAATTGGAAACTCTAATCCTTCGTCAAGACAAGGCTCAACTGGAGGATAGTACT GTTGAGACTATTGCAAATTGCTGTAGAGACCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAACTTACGGATCGTTCGCT GTATGCTATAGCCCATGGTTGTGGTGACCTTATAAAACTAAACATCAGTGGGTGTTCAGCATTTAGCGACAATGCTTTGG CTTACCTTGCTAGTTTCTGCAGAAGATTAAAAGTTCTGAATCTCTGTGGATGTGTTCAAGCTGCATCTGATACTGCATTG CAGGTATTGATGTGATATACAGTATAGTGGTTGTTTTTCATAGTAATATGAATTAAGATGTCTATGAATTATAACCCATT GACTAAATGATCAACAGGCTGTTGGACAATACTGCAATCAGTTACAGTCTTTGAACCTTGGATGGTGTGATAATGTTTGT GATGTTGGAGTCATGAGTTTAGCATATGGGTGTCCTGATCTTAGATCAATTGACCTGTGTGGCTGCATTCGTATAACAGG TATTTTATTTGAATTTCCAGTAGTTTAATGATGGAACTCTTTTGGCAAAGTCACTTGTCATATTTTTGTTACACTGCAAA ATGTGTTTTGTGAAATTGCTAAAGCCACAGATCCTGTCATGCAATGGAGGTGGTTAGAATAAATATTAGTGTTGTGGGGT CCAACATTGACTAGAGATTTGGCCAAATAAGACTTTATAAAGGGTAGACCAACTGTCCTGAGGTAGCTTTTGGGTAGAGT TTGACCTAAATTAAATTCTAAAACGGTTCCAGAACCTATCGTAAGATCTGTTTGTTGGGCCACCCTAAATGCGATAACTA CAGATGTCTAGTCTTGCATACATCATGTTTTAGCTGTCCGGACCATGTGACAAAATAAGACCTTATAAAAGGTAGCAATT CTCACCCGTCACCCCTAGGCTAGTTTTTGGGGTAGTTATACATAACTTGTAAGACTTTGAAAGTGAAAGAATACACATAA AATAGTAAGAAAAAGAATAAATTGGAAATTTGATGTCTACAAGAAAGAAATAAGAATATCTATTGTAATGCACTAGCTCA AACTCATCTAATTTGGGTAGTCATTATAGCTTTTCCACTTGGTTTTTATGCATTATGTCTCGGTGATCAGTACAATTTTA ACCTTTCTACGTCTATTGCAGATGACAGTGTGATTGCTTTGGCAAACAATTGCCCTCACTTGAGGTCTCTTGGATTGTAT TACTGTCAAAACATCACAGACAGGGCAATGTACTGCTTGGCACAGAGCAAAGTGAATAACAGGATGTGGGGAAATGTGAA AGGAGCAAATGATGAGGAAGGCCTAAGGACTTTGAACATTAGCCAATGCACTGCACTCACCCCTTCAGCTGTTCAAGCAG TCTGTGACTCATTCCCTTCTCTCCACACATGCCCGGTGAGACACTCACTTATCATGAGTGGCTGTCTCAGTTTGATGTCT GTGCATTGTGCTTGCGCCGGCCATGCGCATCGTGCAATCACCAATTTCCCTCATCCTGCTCACTGA
CDS sequence (LotjaGi1g1v0271500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGCAAGGATAACCTGAGGACTGAGGACCTGAACCTGAACTTGTCCTTTGAGAAGCTGATGATGGTTGCTGGGAA CAGGAACGGTGGTAAAGGAGGAGGGGATATGGTGAAGGGTGGGGTGATCAATGAATGGAAGGATATTCCTGTGGAGCTTT TGATGCAGATTCTGTCGCTCGTGGATGATCAAACCATGATCCGAGCTTTTGGAGTTTGTCGTGGCTGGAGAGATGCAATT TCCTTTGGCCTCGCCCGGTTATCGCTTTCATGGTGTAGCAAGAACATGAACAACTTGGTCCTGTCTCTTGTTCCCAAGTT CAAAAAATTGGAAACTCTAATCCTTCGTCAAGACAAGGCTCAACTGGAGGATAGTACTGTTGAGACTATTGCAAATTGCT GTAGAGACCTGCAGATCCTGGACCTCAGCAAAAGTTTCAAACTTACGGATCGTTCGCTGTATGCTATAGCCCATGGTTGT GGTGACCTTATAAAACTAAACATCAGTGGGTGTTCAGCATTTAGCGACAATGCTTTGGCTTACCTTGCTAGTTTCTGCAG AAGATTAAAAGTTCTGAATCTCTGTGGATGTGTTCAAGCTGCATCTGATACTGCATTGCAGGCTGTTGGACAATACTGCA ATCAGTTACAGTCTTTGAACCTTGGATGGTGTGATAATGTTTGTGATGTTGGAGTCATGAGTTTAGCATATGGGTGTCCT GATCTTAGATCAATTGACCTGTGTGGCTGCATTCGTATAACAGATGACAGTGTGATTGCTTTGGCAAACAATTGCCCTCA CTTGAGGTCTCTTGGATTGTATTACTGTCAAAACATCACAGACAGGGCAATGTACTGCTTGGCACAGAGCAAAGTGAATA ACAGGATGTGGGGAAATGTGAAAGGAGCAAATGATGAGGAAGGCCTAAGGACTTTGAACATTAGCCAATGCACTGCACTC ACCCCTTCAGCTGTTCAAGCAGTCTGTGACTCATTCCCTTCTCTCCACACATGCCCGGTGAGACACTCACTTATCATGAG TGGCTGTCTCAGTTTGATGTCTGTGCATTGTGCTTGCGCCGGCCATGCGCATCGTGCAATCACCAATTTCCCTCATCCTG CTCACTGA
Protein sequence (LotjaGi1g1v0271500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGKDNLRTEDLNLNLSFEKLMMVAGNRNGGKGGGDMVKGGVINEWKDIPVELLMQILSLVDDQTMIRAFGVCRGWRDAI SFGLARLSLSWCSKNMNNLVLSLVPKFKKLETLILRQDKAQLEDSTVETIANCCRDLQILDLSKSFKLTDRSLYAIAHGC GDLIKLNISGCSAFSDNALAYLASFCRRLKVLNLCGCVQAASDTALQAVGQYCNQLQSLNLGWCDNVCDVGVMSLAYGCP DLRSIDLCGCIRITDDSVIALANNCPHLRSLGLYYCQNITDRAMYCLAQSKVNNRMWGNVKGANDEEGLRTLNISQCTAL TPSAVQAVCDSFPSLHTCPVRHSLIMSGCLSLMSVHCACAGHAHRAITNFPHPAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 375 | 343 | 4.7E-186 | – | |
| PANTHER | 33 | 375 | 343 | 4.7E-186 | – | |
| SUPERFAMILY | 45 | 82 | 38 | 7.46E-8 | ||
| Pfam | 47 | 80 | 34 | 9.1E-7 | ||
| Gene3D | 61 | 305 | 245 | 1.4E-46 | ||
| SUPERFAMILY | 83 | 333 | 251 | 7.06E-36 | – | |
| SMART | 107 | 133 | 27 | 220.0 | ||
| SMART | 134 | 159 | 26 | 3.1E-4 | ||
| SMART | 160 | 185 | 26 | 0.0094 | ||
| SMART | 186 | 212 | 27 | 1.6 | ||
| Pfam | 213 | 236 | 24 | 0.0019 | ||
| SMART | 213 | 238 | 26 | 1.7E-4 | ||
| SMART | 239 | 264 | 26 | 1.3E-6 | ||
| Pfam | 264 | 288 | 25 | 0.41 | ||
| SMART | 265 | 290 | 26 | 2.0E-8 | ||
| SMART | 306 | 331 | 26 | 0.043 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0271500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…