Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0274400 |
| Transcript ID | LotjaGi1g1v0274400.6 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WAT1-related protein; TAIR: AT5G40230.1 nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230; TrEMBL-Plants: tr|G7J673|G7J673_MEDTR WAT1-related protein; Found in the gene: LotjaGi1g1v0274400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67247511..67250969) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGTAACACTTAGCAATGATGAAGGCGGCGGCCGTACTATTAAAATATCAATGCATCGACCAATCATAAAGTGTTCGG GAAAACACAACAACAGGAGTCAAGTGTAGACGTAAGCTGTGAGGTGAACTCAGAACTGAAGGTGTCTGTCTGTGTGTTTC AGAATCAATCAGAAATGGGGAAGGTGAGAGCTGCGTTTGTGGGAATGATCATGGCAGAGTGTGCTCAAGTTGGTTTAATC ATATTGAGCAAACAAGTCATGGCACAAGGCATGACCAATTTCATCTTCATCTTCTACTCCAACACAATCGCTTCCCTCAT TCTTCTTCCCACTTCATTCTTAGTCCACAGATTTCAACGCCCTCCTATCACTTTCTCCATCCTTTGCCAATTCTTCTTGC TTGGATTACTCGGGCAAGTTCACTTAATCCTACCCCTTTATTGATTATGCATAAATTGTGAGTTCTATTCTAATAACATG GTTTTTTTTTTTCATTTTTAGTTTGTTTTCAGATTTTTGGCTCAGGCTTTTGGGTATGCTGGGATTAACTACAGCTCACC GACGCTTGGTACTGCCATGCTCAACCTTATTCCTGGTTTTACCTTCATACTTGCAGTTGCTTTCAGGTTCAGTGACTTTG AATTATTTGAGAATTTTCTGTTCTTTCAGACAAATTTATTTGAGCACTTTGGCTAGTTGTCATTATTCTATTTGGGTGAA TAAAGAGGAAATTTTGAGCTTATTGAACATTCTAGTTTTGGTAACACTTGTGTTTTCTGGTTGAATGAGAATTTATAAAT ATAAATAATGTGTTTTCTGTGAATAATATATCATGACTGTGCCTTGTGATGGATTTTCTTCAATTCTGTTATCACTAATT TTCCGCCTAATGAAGGATTGGTGCCATCAACTCCTATTTCATGGAGATTTTGAAGTAGCATTTTGTTGGAACTACCATGT CCTCACTTTAGGATGAAGTAAATGTTTCACATTGAATTACAAACTATCTTGAGTGACAGCTGTGCAGTACTTCTCTATCT CACTAGTATTTGGATACTTGTTAGTATCTCATTTTGAGACAAAAAAGTGAACAAAACTCTTCCATGGATTGAAAATCCGT TTAAATTACACTCAATTGTATCCAAACACACACGGAGGATAGAATTAACTTTTTAAGTCTTTTTCCTTCAGTTTTATTTC TTAGTTGTTGGATAGACTGCAAACCCATAAGTAATTTGCAAGGGTTAATTCAACTGGCATATAACCTGTCCAAGTCTCAA TCATTTTCTTGGATTTGTCTCTTTTCTGGCTCCAAATGAAGTCAAATTAATTTATCAATTCTCAAGGGAATTGCTCTATT GAGCCTATTACAATGTAATTTGACCTAAAATTCTCTCATATATCAATTTGGTTTACCAACATGCATAAATAGTTGTCAAT TACTGAAATAGTTATACTGCAGAATCATGTCGCTGAGATTTTTTGCACTCTTTATTTTCCCAAAATTCTTTCCAACTAAA GATTCACAATTAATCATATTTTGTCTTGAAAATGAAAAATGTTCCATTTTTGGAGTTTAGGCACCTGGTGCTAACACGAG TGCTTTGAGATTCTTGTTTTCAATAATCATATGTTCAGATCACATAATGATTTATTTGATCAGAAAACCTTCTGCAATTC TTTTAAGTAAAAGCAACTCCTCAGGGTTTTGAAAGTTTTGTATGTTTTGTGTCTTTTTTTCTAGACAAAAGGCTGACCAA ATATGCACACTCATTGTAAAGCAAAAGATACATACTTGTTCTTTCAATCAAACCAGTCATTCACTGCTATACATATGCTT TCAGAATGGAACTATTGGATTGGAAAAGCTCTAGTACCCTTGCTAAATCACTGGGAACAATAGTATCAATTACTGGTGCA TTTATTGCGACATTGTACAAAGGCCCTGCACTTCTGATGGGGCTATCACCTTCAAACTCATCTCAGCAGCCAGTTTCCTC TCAAGATTCTAATTGGATACTTGGAGGATTATTTCTCGCAGCTGATTGCGTAATGGCTTCAGGATTTTTAATTTTACAGG TAAAATTATCAAGTAGAAGTAGAGCTTCATGATTAATGCTTTCTACTTGCATGGTACACAATGGGTTGAATATAATTGGC TATATTTCAGGCTTCTATTCTTAAGAAATATCCAGCAGGGTTGATTACTGTATTCTTTTATACTTTCTTTGTGGCCATTC AATCTGGTGTGACCTGTTTGGTTGTGGAAAGAGACATCAGTGCTTGGAGCTTGGAACCAATGTTTAGGTTGCTTGCTGTT TTATACTCGGTAATCAAAATGTAAATTAATTTGATTAGCTTAGAACTAGTAACTACTGCTTATCTTGGCCTAGAAGTCTG AAACATCATCTGTAAACATTCCAGGGAGTCATGGGCTCTGCATTTCAAGTCGGTGTTACTACTTGGTGTTTACACCAGAC AGGACCTGTTTTTGTTTCCATGTTCAAGCCCATAGGCATTGTCATATCGGTGGTTGTAGGTGTTGCCATCCTTGGAGATG CATTCTATCTTGGAAGGTAAGTTTGTGTCTCTCTTCTATATTGTGTTCAGTTGTACTGTTGAGTTTATTCAACGATCGCG AATTCATTGTCTTTCAATGCAGTCTGGTTGGTGCAACTGTGATTGTTCTTGGGTTTTATTCTGTACTGTGGGGGAAATCC AAAGATATTGAAGTGAAAAGCTTGGAATCAAGGGGGAAACAGACCCCTCTTTTGAAGGAAAACAGCAGTGAAGACATTTA AAGTACATTTAAAAGGATGCTTGCTACAATTCTGCCGCAAATATGCAGTTTCGATTGTTTCACTCAGAGTAAGGGAGTAA GCTCTGACTCTGAAGTATGTTACAAGAAAACTATCTGGTAAATCTTCTAAGAAATATTTTGATTCAATTGATCTGTATTT AGACATAAATTTTGATATACTCCCTCCGGTCCTATTTATAAGTAACAAAAAAAAATTCACATAGTTTAAGAAATGTAGTT AAACTAGATAAAATGCATTAAATTTGTCTTAAATTAAAATGAACTTCCAAAATTACCCTTTGTTATTAGTGTTGGAAAGT GGAAAAGAAAGAGAATAATTAAAGAGACACATTTTACAAGTTATAATTAATAAGGGCATCATTGGAAAAAATTAATTAAT ATAGCTCAAACTTTCATTTGGTTCTTATAAAAAGGACCAAGATTTTTCTTCTCTTTCATGCTTATAAATAGGACCGGAGG GAGTATATGATATTATGTATTCATGTAGCTCCTACCAATGGGGAAAAAGCCCTGGTGTATTTGTTAAGAATAATGACTAT TCATAAATACCACATGCAATCAATTAGATTGTTGGAAGAAAATATCAATAAATGCATAGCATTGATTCATGGAAATCTCA AGCTTAGTTTCAATCAAAT
CDS sequence (LotjaGi1g1v0274400.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGAAGGTGAGAGCTGCGTTTGTGGGAATGATCATGGCAGAGTGTGCTCAAGTTGGTTTAATCATATTGAGCAAACA AGTCATGGCACAAGGCATGACCAATTTCATCTTCATCTTCTACTCCAACACAATCGCTTCCCTCATTCTTCTTCCCACTT CATTCTTAGTCCACAGATTTCAACGCCCTCCTATCACTTTCTCCATCCTTTGCCAATTCTTCTTGCTTGGATTACTCGGA TTTTTGGCTCAGGCTTTTGGGTATGCTGGGATTAACTACAGCTCACCGACGCTTGGTACTGCCATGCTCAACCTTATTCC TGGTTTTACCTTCATACTTGCAGTTGCTTTCAGAATGGAACTATTGGATTGGAAAAGCTCTAGTACCCTTGCTAAATCAC TGGGAACAATAGTATCAATTACTGGTGCATTTATTGCGACATTGTACAAAGGCCCTGCACTTCTGATGGGGCTATCACCT TCAAACTCATCTCAGCAGCCAGTTTCCTCTCAAGATTCTAATTGGATACTTGGAGGATTATTTCTCGCAGCTGATTGCGT AATGGCTTCAGGATTTTTAATTTTACAGGCTTCTATTCTTAAGAAATATCCAGCAGGGTTGATTACTGTATTCTTTTATA CTTTCTTTGTGGCCATTCAATCTGGTGTGACCTGTTTGGTTGTGGAAAGAGACATCAGTGCTTGGAGCTTGGAACCAATG TTTAGGTTGCTTGCTGTTTTATACTCGGGAGTCATGGGCTCTGCATTTCAAGTCGGTGTTACTACTTGGTGTTTACACCA GACAGGACCTGTTTTTGTTTCCATGTTCAAGCCCATAGGCATTGTCATATCGGTGGTTGTAGGTGTTGCCATCCTTGGAG ATGCATTCTATCTTGGAAGTCTGGTTGGTGCAACTGTGATTGTTCTTGGGTTTTATTCTGTACTGTGGGGGAAATCCAAA GATATTGAAGTGAAAAGCTTGGAATCAAGGGGGAAACAGACCCCTCTTTTGAAGGAAAACAGCAGTGAAGACATTTAA
Protein sequence (LotjaGi1g1v0274400.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGKVRAAFVGMIMAECAQVGLIILSKQVMAQGMTNFIFIFYSNTIASLILLPTSFLVHRFQRPPITFSILCQFFLLGLLG FLAQAFGYAGINYSSPTLGTAMLNLIPGFTFILAVAFRMELLDWKSSSTLAKSLGTIVSITGAFIATLYKGPALLMGLSP SNSSQQPVSSQDSNWILGGLFLAADCVMASGFLILQASILKKYPAGLITVFFYTFFVAIQSGVTCLVVERDISAWSLEPM FRLLAVLYSGVMGSAFQVGVTTWCLHQTGPVFVSMFKPIGIVISVVVGVAILGDAFYLGSLVGATVIVLGFYSVLWGKSK DIEVKSLESRGKQTPLLKENSSEDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 6 | 341 | 336 | 1.1E-164 | ||
| PANTHER | 6 | 341 | 336 | 1.1E-164 | – | |
| Phobius | 7 | 24 | 18 | - | – | |
| TMHMM | 7 | 24 | 18 | - | – | |
| Pfam | 20 | 145 | 126 | 1.5E-6 | ||
| Phobius | 25 | 35 | 11 | - | – | |
| TMHMM | 34 | 56 | 23 | - | – | |
| Phobius | 36 | 57 | 22 | - | – | |
| SUPERFAMILY | 49 | 148 | 100 | 5.36E-5 | – | |
| Phobius | 58 | 68 | 11 | - | – | |
| Phobius | 69 | 91 | 23 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 92 | 96 | 5 | - | – | |
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 97 | 117 | 21 | - | – | |
| Phobius | 118 | 128 | 11 | - | – | |
| Phobius | 129 | 149 | 21 | - | – | |
| TMHMM | 130 | 149 | 20 | - | – | |
| Phobius | 150 | 174 | 25 | - | – | |
| TMHMM | 175 | 194 | 20 | - | – | |
| Phobius | 175 | 195 | 21 | - | – | |
| Pfam | 180 | 315 | 136 | 3.0E-6 | ||
| Phobius | 196 | 206 | 11 | - | – | |
| TMHMM | 206 | 228 | 23 | - | – | |
| Phobius | 207 | 229 | 23 | - | – | |
| Phobius | 230 | 240 | 11 | - | – | |
| SUPERFAMILY | 235 | 319 | 85 | 1.57E-5 | – | |
| Phobius | 241 | 265 | 25 | - | – | |
| TMHMM | 243 | 265 | 23 | - | – | |
| Phobius | 266 | 271 | 6 | - | – | |
| TMHMM | 272 | 291 | 20 | - | – | |
| Phobius | 272 | 291 | 20 | - | – | |
| Phobius | 292 | 296 | 5 | - | – | |
| TMHMM | 295 | 317 | 23 | - | – | |
| Phobius | 297 | 317 | 21 | - | – | |
| Phobius | 318 | 345 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0274400.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…