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LotjaGi1g1v0279900.1

Overview

Field Value
Gene ID LotjaGi1g1v0279900
Transcript ID LotjaGi1g1v0279900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Cyclic nucleotide-gated channel; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|A0A151TS64|A0A151TS64_CAJCA Cyclic nucleotide-gated ion channel 1; Found in the gene: LotjaGi1g1v0279900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:68346062..68352829) extracted from Lotus japonicus Gifu genome v1.2.

GTAATGAATCTATAATATCATCAACAACATATAACACCAACTGTCTTCTCTTCTCTCTTTGACGGTCGCTGTCTGTAGAC TCCGAAACCCCCCATTTCTTCTTCCACGCTCGCTGCTTTCCTGGAACCTTCATCTTCATCTTCTTCTTCTTCTTCTTCTT CTTCTTCTTCATTTTCTCCGCTTCAAAAATCTTCTGCTGTTTCTCAATTAGATCTCTGCTTTTCTTCCTCACTCACACAT GTTGTAATCAATTATATACTCTTCCTTTCAACTGCAACTGCAACTGCAATTGCAACTACTCTCTCTATCTCTATCTCTAT CTCTATCTGCCTTCTCCTTCACTTCCCGGTACGTTTTCCTCTTCTTGCTTGCTTCCTTGTTTCGTTATTTTCAACTTGCT ACACCCAATTTGACTAATACCTTCTATCTCTATCTCTGTTGACTGCAGAAATTTTAAAGGATTCGGGGTTTTCCCCTTAT TTTCTTTCATGCAATTATTGCTGTTTTTGTTGTTACTTGATTTTTGTTGCTTTTAATTTCACATGGTACATACGAGGGGT AAAGCCATTCTTTGCAATTTCATTAATCCGTATCATGATATGTACTTGTATGTGTGTGTTCACAAGTTTAAGGGAAACTT TTGTTTTTTTTTTTTTTAAAGAATTTGAGGGAAACTATAGATACGGCTATCTCGCTGTTCTTTGTGTTCTCAATTTCATT TCATGAATTTTGTGTTTGTTATTCATTTTTGTCACTTATATATAGGCAGGCACACAATATATAGCAATGTTCTTGGGCAG CAAATTGTCCTATTGTTAGTTGACTTGAGTCAATGAAAAAACGAGTCTGCATCCGAGTTATCTCGATTTTTCTTTGTAGA ATTGTAAAGTCCGAGTCTATGAGTTGACTCGCGAGTTTGACTGCAATGAGTATTAGTGTAGTGTTAGTATATTACTTGTT ATATACTAGTTAGTTTGTGCTTTGGTTTATAAATGGAGTATCTGATTGTGTCAATATCTCTTTTGGTTTGATGTTTGTTT CAGGAGTAGGCTGTGAGGAATTCGAGGTTCATGGATAAGTTCACTGTTCTGTGATATCTACAAGACACAGATTCGTTGTG TTCTGCCTTGCTTTTGAACTAGGCTACAGTCATGAATTTTCATCAAGACAAATTTGTTAGGTTAGTTTAATGCTGTTATC TTTATTTACTCTTTGTCATGCTATGTATGATATTTTATAAGCATGTCACTTTTCAATTGAAGCGAGTCTTTCATGCTTGC TGTTGAGACTGTCATAGCCACTGTTTCAGTCACCACTCTTCGACTTTAGCATACTTTAAATTTTCAAACTTCGATCCTAT TATGTCTCTTTTATAATTTTATAGCCCCTGCTTTGGACATCTTTTCATCAGATGGTTAATGAGGTTATATTATTTATATG GTGTTCAGATTCCAGGACTGGAATTCAGACAAGGGTTCTGAGATAAACTCTCCTGCAATTCACGCATCAGGCTCGCGGAG AATTAGAACTACACTATATTCAGTTTCCGCCAAGTTTCAGAGGGGTTTTGAATCTAGTTCTGAGAGGATAATGAGATTTG CGAAATCATTCAAATCTTTTCCTCAGAGCAGTGTTCCTGCTAAATGTTTTAGTTCTAGAAAGAAAATCCTTGATCCACAG GGTCCTTTCCTTCAAAAGTGGAACAAGATATTTGTGCTATCGTGTCTTATTGCTGTATCACTAGATCCTTTGTTCTTCTA CGTACCTGTGATTGATGATGACAAGAAATGTCTTTCACGGGACAGAAAAATGGAAACTACGGCAACTGTTTTAAGATCTT TCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGAACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGA AGAGGTGTTTTGGTTAAAGATGCTTGGGCAATAGCAAAGAGGTATCTGGCATCATACTTCTTCATTGACATACTTGCCGT TCTTCCCCTCCCACAGGTGAGGAATACTGTGTCATTAATATATCAAATAATTGCATTAGTAAGTTCAATATAAAACATGT AGACAACTCAAACATATATTGTAACTTGGGGATAAGCTCAGGGCTCCAAGTTTATTATCTTAGAAGTTTTATGGGCTTAG ATTAAAAAGTTTATTTGATCAGATTCATTTAATAAGCTTATTTTGACTCAAAGCTTGTTCCTACATGGCTAGGTGGTGAT TCTAATTATCATTCCAAAGCTGAGAGGCTCTGAATCACTGAATACAAAGAACTTGCTAAAATTTGTTGTCTTCTTCCAAT ATTTTCCACGGTTTATACGAATAATTCCATTATATAAAGAAGTTACAAGGACCTCTGGCATTCTTACTGAAACAGCTTGG GCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTTGCAAGTCATGTAAGTTTATGCTGTTATTTTTCATTATCAATTTT CTTGTGTAAATTTTTGAAAATTTACTTTTAGTTATATTGCTTTCTACTATATGTATTATTTATTTTTCCCATTTGATTTC TGAGTTCATCAATTTTTCTTTTTGTCGAAAAAACTCATGATTTTAAGGTCTCTGTTGAATGTATTGTGGTTTTGTTTTAT CTACTACTATATTTCACTTTGCCTGATTACTAGATTAAACAAGTAAAAGTTTTTATAGGTACATATAACTCTTGTGGTGA CTATTTGGACACACAACTGGGTTATGATCCCAAACTGTATATTACACTAGTTACATGATAGAGATGTGGATTACTAGATT CAAATATTAGAGTATTAGGTAAAATTGTCAAGTAAGGATGTTCCTTTCGTGAATTTTTTTGAATTATGATAGCACATTTT GCAAATTCTACAAAGCTGTGATAGGTTGACTGGGTTGGGGGAGAGTTATTTTGTGTTTTTATTTGTGGCAGATTTGATTT TTCAAACCTTTTATTTCCACGATATATAGCATAAGCGTGTTATGAATTATGACACAATTTAGATATGTAGATCTGTTAAT TTCCTTGTTCGTGATTCAAGTTGATGATTTGTAATCATCATTAGCTTGATAAATTTTCTTGCACCCCTATGAAACAGACA CTGAAGTAAAAGGAGCGATGCCTTTGTTGGACATACTATTTGACACTTGAATTGGACAACCACATACACATATTAGAAAG TTGTCTGATGCTATGAAATGCCGCATAATTTTTCTGTTTTTGTTGTGTCCATACTCCATGCTTTTTAGATCCTGTATATT ATTTTTTCAAACTCTTAGGTCCTTGTCATTTCATTTTGGTTCCCATTGTAGTATATTTAGATCTGATATAAATGTTGCAT TATTTGAATGAAAATGGTCTTAATAATGAAAATTTAAAATGATATCATCCACTTATCTTTCTGATTGCTACTTTACTTGT TGCTCTTAGGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAACGTGCCTGTAGAAC AAATATCACATGTAACAAGGCGGATCTGTATTGTGATGATCGTCGTGTCTTAGGCCCAACAATTTCAACGTTCCTCAATG CTTCTTGCCCAATACAAACTCCAAATACAACACTCTTTAATTTTGGAATATTCCTTGACGCCCTTCAATCAGGGGTTGTA GAGTCAACAGATTTTCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATTTGAGGTATGCTTTATTGTTTAT TTGTTATATGCTATTAATTTTAAGACCACAGAGTAATCATATGTTGCAATGTTCTATGATTTTGCTGACTTACTATATAT TAAGTTGATGTGAGCTATGAATGTTATGCAAGCAACCTGTAGCTGTGCCTGGACTCATATGTCTGCATGCTCCTAATGTA GAATTGTTTATTATAGTTATCTTTTTCGCTGAATATAATTGGGTGAAAGTATTCTCGATTTCAATTTGTGTGCATACTCA ACATGTGAAGGTTTCCTTCAAGTGCTTTTATGCGTGACATGCATGTGTGTTTGAGGGGTATTTTGGACTCATATTGTTTG TAGATAAAATGGACAAATGATAAGTATGTTTTTCATGTCTGATTCTATTTTCTGTATTTCTCTTGCTGTTTAAATGGTAT CAATTTTTAATTACAAAGATTACATAATATAAAGCATTTAGATGTTCAGAATTCAGATAGTCAGGTTTGATGCTGAGAAA TGGAAGATGGTTTTGGCTTAAGTGCTTAAGTTTTGAACTTGTTTAATACCTCAATGAAGAGGTCGGGGTTTGGGGGACAT GTCAGCCAAGTATGATATTTGTGTTGTATACTGCTCGTATCATAATGTTTTAACTTTTAAATTGTGTTGTTGAGCACATT ATTACTAAATTATCATGAAATCTGTTAATAATCCTCCACCCTCTTTTGGGGAATTCCTTTATTGCAGTGCTCTTGGTCAG AACCTGGAAACAAGTACCTATGTTTGGGAAATCTCCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTGTTATTTGCCTT CCTCATTGGAAATATGCAGGTTGGTATCAAATATCTCTACAATGTCCTTTAATAAGACAAAACTGGCAAATACTACTACT TTTTGTTGGTTGTGGAATAATTTGGTTGCCTGCAAGAGATATTTTCCTCTCGAGTTCTGTCCCCTTTTTTAATGATAGCA CTTTTTTTGTTTTTTTTTGCTATATATTTTTCCATTGCTAGTTGAATTAGATTTTCCATTTGGAGACACTGACTTTCTCA TGGAATACGACATCATATACAAACTTTCCTTATTATATTTTCTAGGTTGTCCAGATTAACTAGATTTTATAACCTATGGT TACAATAAAGTCTTATCTTTTCCTAGCTTTTAAGGAAATGCGTGCATTTGTAATTCCAGTTTCAAGTGTCGTTAATTGCC TTGGAATGGAATTGTTGCCTGAAATGGGGTGAAGTGGTGAACCATTATTGTTTATCAAGTTATTGAAATTCTTTGTAGGT AGGCTGCGTAAATGTGTGTTGCTAATGCTCTTATGCTTCCATAACATTATCTCTCCCCCCCCTAATAATCATCTTCTAAA TATACCCTAAATCTTGGTCACCAGGTCATAGTTATTTTATTTTCACTTTTCTGATTGAAAAATAGTCAGACTCCTGGGTC ATTAAAGGTTCTAAGATTTGACACATTATACTTGCTTTGAAACAGACATATTTGCAGTCAACAACTACGAGATTGGAGGA GATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATAGATTACTTCCTGACAGCCTTAAAGAAAGAATCAGAC GACACGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACCATTTGATTCGTGATCTTCCCAAGGATTTAAGA AGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGGGTAAGTTTATCCACATCTCGTAGGATCCATTGGAAATT CAAATTTAAAATAGTAATAGGTAGATAAAAAAGAGCAGTCGAACGGATTTTAATACAATCCTTGAAAGGTAAACTATTAT CAGCACTATTTGAAGCTTTGAAGCTAGTTGCTTTTCTATTAATATTAGCCTATGCTTGCGTCATAGCCGGTCCTAAGCCC GGATAAAGGAGGAAAGTTGTGTTTGGCTTTTGGCTGCCAAAGTAAAACTGACAGACATCTTTAATACTTTTGTTTGATAA AACTTTTGTTTATTTGTTTGTTTGGTTAAAAATAATAACAACTTTTCTCTAGGTGCCAATATTTGAGAAAATGGATGAGC AACTTCTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTTTACACGAAAGAAAGCTGCATTGTCCGGGAAGGAGACCCT GTTGATGAAATGCTTTTCATAATGCGCGGCAAGCTATTGACCGTGACAACTAACGGTGGAAGAACGGGCTTCTTTAACTC TGAATTCCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCATTAGATCCTCATTCCTCATCCAACCTCC CCATCTCAACAAGAACTGTCCAAACTCTTGCAGAAGTGGAAGCCTTTGCTCTGAAAGCTGATGACTTGAAGTTTGTCGCG TCTCAATTCCGGCGTCTTCACAGCAAGCAGCTTCGCCACACTTTCAGGTTCTACTCACAACAATGGCGCACTTGGGCTGC ATGCTTCATACAAGCAGCGTGGAGGCGGTATAGTAAGAGGAAGCTTGAAGAGTCTCTCAAGGAAGAGGAGAATAGGCTGC AAGATGCTTTGGCCAAGCAAGGTGGTACTTCACCTAGTCTTGGTGCCACAATATATGCTTCTAGATTTGCTGCTAATGCA CTGAGAGCTTTAAGGAGAAATAACACTAGGAAGACCAGGGTACCAGAGAGATTACCACCTATTCTGCTTCAGAAACCAGC TGAACCTGATTTTACTGCTGAAGAGCAGTAGGGTAGGGTGTAATCATTGGCTATGGATGCCTGGTTCTTAAGAAAAGGAA AATGTGACCGGAAATGGAATATTGATATGAAATGAACATTTCATAGGAAGGCGAAAGTGTCATTTCATTTATTTTTATTT TTTATGTTAGTATAAGATATAAGAAGTGTATAAAATATAAACTATGAAGTTGTATATATAAATTATTCTTATTTTAAAAA ATATATTCTTAATGATATTCGAGAATGAAACTGTTACAAAATGTTTTT 

CDS sequence (LotjaGi1g1v0279900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATTTTCATCAAGACAAATTTGTTAGATTCCAGGACTGGAATTCAGACAAGGGTTCTGAGATAAACTCTCCTGCAAT TCACGCATCAGGCTCGCGGAGAATTAGAACTACACTATATTCAGTTTCCGCCAAGTTTCAGAGGGGTTTTGAATCTAGTT CTGAGAGGATAATGAGATTTGCGAAATCATTCAAATCTTTTCCTCAGAGCAGTGTTCCTGCTAAATGTTTTAGTTCTAGA AAGAAAATCCTTGATCCACAGGGTCCTTTCCTTCAAAAGTGGAACAAGATATTTGTGCTATCGTGTCTTATTGCTGTATC ACTAGATCCTTTGTTCTTCTACGTACCTGTGATTGATGATGACAAGAAATGTCTTTCACGGGACAGAAAAATGGAAACTA CGGCAACTGTTTTAAGATCTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGAACTGGATTCATTGCT CCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTAAAGATGCTTGGGCAATAGCAAAGAGGTATCTGGCATCATACTT CTTCATTGACATACTTGCCGTTCTTCCCCTCCCACAGGTGGTGATTCTAATTATCATTCCAAAGCTGAGAGGCTCTGAAT CACTGAATACAAAGAACTTGCTAAAATTTGTTGTCTTCTTCCAATATTTTCCACGGTTTATACGAATAATTCCATTATAT AAAGAAGTTACAAGGACCTCTGGCATTCTTACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCT TGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAACGTGCCTGTAGAA CAAATATCACATGTAACAAGGCGGATCTGTATTGTGATGATCGTCGTGTCTTAGGCCCAACAATTTCAACGTTCCTCAAT GCTTCTTGCCCAATACAAACTCCAAATACAACACTCTTTAATTTTGGAATATTCCTTGACGCCCTTCAATCAGGGGTTGT AGAGTCAACAGATTTTCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATTTGAGTGCTCTTGGTCAGAACC TGGAAACAAGTACCTATGTTTGGGAAATCTCCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTGTTATTTGCCTTCCTC ATTGGAAATATGCAGACATATTTGCAGTCAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACA GTGGATGTCTCATAGATTACTTCCTGACAGCCTTAAAGAAAGAATCAGACGACACGAGCAGTACAAATGGCAAGAAACCA GAGGTGTTGATGAAGACCATTTGATTCGTGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTGGCT TTGCTGATGAGGGTGCCAATATTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCT TTACACGAAAGAAAGCTGCATTGTCCGGGAAGGAGACCCTGTTGATGAAATGCTTTTCATAATGCGCGGCAAGCTATTGA CCGTGACAACTAACGGTGGAAGAACGGGCTTCTTTAACTCTGAATTCCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTT CTCACATGGGCATTAGATCCTCATTCCTCATCCAACCTCCCCATCTCAACAAGAACTGTCCAAACTCTTGCAGAAGTGGA AGCCTTTGCTCTGAAAGCTGATGACTTGAAGTTTGTCGCGTCTCAATTCCGGCGTCTTCACAGCAAGCAGCTTCGCCACA CTTTCAGGTTCTACTCACAACAATGGCGCACTTGGGCTGCATGCTTCATACAAGCAGCGTGGAGGCGGTATAGTAAGAGG AAGCTTGAAGAGTCTCTCAAGGAAGAGGAGAATAGGCTGCAAGATGCTTTGGCCAAGCAAGGTGGTACTTCACCTAGTCT TGGTGCCACAATATATGCTTCTAGATTTGCTGCTAATGCACTGAGAGCTTTAAGGAGAAATAACACTAGGAAGACCAGGG TACCAGAGAGATTACCACCTATTCTGCTTCAGAAACCAGCTGAACCTGATTTTACTGCTGAAGAGCAGTAG 

Protein sequence (LotjaGi1g1v0279900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNFHQDKFVRFQDWNSDKGSEINSPAIHASGSRRIRTTLYSVSAKFQRGFESSSERIMRFAKSFKSFPQSSVPAKCFSSR KKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDDKKCLSRDRKMETTATVLRSFSDIFYIIHIIFQFRTGFIA PSSRVFGRGVLVKDAWAIAKRYLASYFFIDILAVLPLPQVVILIIIPKLRGSESLNTKNLLKFVVFFQYFPRFIRIIPLY KEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQRACRTNITCNKADLYCDDRRVLGPTISTFLN ASCPIQTPNTTLFNFGIFLDALQSGVVESTDFPQKFFYCFWWGLRNLSALGQNLETSTYVWEISFAIFISIAGLVLFAFL IGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLKERIRRHEQYKWQETRGVDEDHLIRDLPKDLRRDIKRHLCLA LLMRVPIFEKMDEQLLDAMCDRLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCGEEL LTWALDPHSSSNLPISTRTVQTLAEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKR KLEESLKEEENRLQDALAKQGGTSPSLGATIYASRFAANALRALRRNNTRKTRVPERLPPILLQKPAEPDFTAEEQ 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 96 96 -
PANTHER 6 714 709 0.0
PANTHER 6 714 709 0.0
SUPERFAMILY 85 409 325 2.09E-28
Pfam 94 414 321 4.2E-32
TMHMM 97 118 22 -
Phobius 97 115 19 -
Phobius 116 135 20 -
Phobius 136 154 19 -
TMHMM 145 167 23 -
Phobius 155 182 28 -
Phobius 183 207 25 -
TMHMM 184 206 23 -
Phobius 208 218 11 -
Phobius 219 238 20 -
Phobius 239 257 19 -
Phobius 258 279 22 -
TMHMM 258 280 23 -
Phobius 280 378 99 -
Phobius 379 401 23 -
TMHMM 379 401 23 -
Phobius 402 716 315 -
Gene3D 411 478 68 3.5E-14
SUPERFAMILY 416 609 194 3.45E-35
Gene3D 485 605 121 2.6E-43
ProSiteProfiles 487 571 85 12.969
SMART 487 618 132 4.6E-16
CDD 487 618 132 1.77831E-18
Pfam 507 598 92 1.7E-7
ProSiteProfiles 623 652 30 6.504
Coils 639 659 21 -
MobiDBLite 688 716 29 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Ion channel activity Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Biological process Ion transport The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0279900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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