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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0279900 |
Transcript ID | LotjaGi1g1v0279900.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Cyclic nucleotide-gated channel; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|A0A103YJC0|A0A103YJC0_CYNCS Cyclic nucleotide-binding domain-containing protein; Found in the gene: LotjaGi1g1v0279900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68346319..68351411) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGTTATATTATTTATATGGTGTTCAGATTCCAGGACTGGAATTCAGACAAGGGTTCTGAGATAAACTCTCCTGCAA TTCACGCATCAGGCTCGCGGAGAATTAGAACTACACTATATTCAGTTTCCGCCAAGTTTCAGAGGGGTTTTGAATCTAGT TCTGAGAGGATAATGAGATTTGCGAAATCATTCAAATCTTTTCCTCAGAGCAGTGTTCCTGCTAAATGTTTTAGTTCTAG AAAGAAAATCCTTGATCCACAGGGTCCTTTCCTTCAAAAGTGGAACAAGATATTTGTGCTATCGTGTCTTATTGCTGTAT CACTAGATCCTTTGTTCTTCTACGTACCTGTGATTGATGATGACAAGAAATGTCTTTCACGGGACAGAAAAATGGAAACT ACGGCAACTGTTTTAAGATCTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGAACTGGATTCATTGC TCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTAAAGATGCTTGGGCAATAGCAAAGAGGTATCTGGCATCATACT TCTTCATTGACATACTTGCCGTTCTTCCCCTCCCACAGGTGAGGAATACTGTGTCATTAATATATCAAATAATTGCATTA GTAAGTTCAATATAAAACATGTAGACAACTCAAACATATATTGTAACTTGGGGATAAGCTCAGGGCTCCAAGTTTATTAT CTTAGAAGTTTTATGGGCTTAGATTAAAAAGTTTATTTGATCAGATTCATTTAATAAGCTTATTTTGACTCAAAGCTTGT TCCTACATGGCTAGGTGGTGATTCTAATTATCATTCCAAAGCTGAGAGGCTCTGAATCACTGAATACAAAGAACTTGCTA AAATTTGTTGTCTTCTTCCAATATTTTCCACGGTTTATACGAATAATTCCATTATATAAAGAAGTTACAAGGACCTCTGG CATTCTTACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTTGCAAGTCATGTAAGTTTATGCT GTTATTTTTCATTATCAATTTTCTTGTGTAAATTTTTGAAAATTTACTTTTAGTTATATTGCTTTCTACTATATGTATTA TTTATTTTTCCCATTTGATTTCTGAGTTCATCAATTTTTCTTTTTGTCGAAAAAACTCATGATTTTAAGGTCTCTGTTGA ATGTATTGTGGTTTTGTTTTATCTACTACTATATTTCACTTTGCCTGATTACTAGATTAAACAAGTAAAAGTTTTTATAG GTACATATAACTCTTGTGGTGACTATTTGGACACACAACTGGGTTATGATCCCAAACTGTATATTACACTAGTTACATGA TAGAGATGTGGATTACTAGATTCAAATATTAGAGTATTAGGTAAAATTGTCAAGTAAGGATGTTCCTTTCGTGAATTTTT TTGAATTATGATAGCACATTTTGCAAATTCTACAAAGCTGTGATAGGTTGACTGGGTTGGGGGAGAGTTATTTTGTGTTT TTATTTGTGGCAGATTTGATTTTTCAAACCTTTTATTTCCACGATATATAGCATAAGCGTGTTATGAATTATGACACAAT TTAGATATGTAGATCTGTTAATTTCCTTGTTCGTGATTCAAGTTGATGATTTGTAATCATCATTAGCTTGATAAATTTTC TTGCACCCCTATGAAACAGACACTGAAGTAAAAGGAGCGATGCCTTTGTTGGACATACTATTTGACACTTGAATTGGACA ACCACATACACATATTAGAAAGTTGTCTGATGCTATGAAATGCCGCATAATTTTTCTGTTTTTGTTGTGTCCATACTCCA TGCTTTTTAGATCCTGTATATTATTTTTTCAAACTCTTAGGTCCTTGTCATTTCATTTTGGTTCCCATTGTAGTATATTT AGATCTGATATAAATGTTGCATTATTTGAATGAAAATGGTCTTAATAATGAAAATTTAAAATGATATCATCCACTTATCT TTCTGATTGCTACTTTACTTGTTGCTCTTAGGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACAT GCTGGCAACGTGCCTGTAGAACAAATATCACATGTAACAAGGCGGATCTGTATTGTGATGATCGTCGTGTCTTAGGCCCA ACAATTTCAACGTTCCTCAATGCTTCTTGCCCAATACAAACTCCAAATACAACACTCTTTAATTTTGGAATATTCCTTGA CGCCCTTCAATCAGGGGTTGTAGAGTCAACAGATTTTCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATT TGAGGTATGCTTTATTGTTTATTTGTTATATGCTATTAATTTTAAGACCACAGAGTAATCATATGTTGCAATGTTCTATG ATTTTGCTGACTTACTATATATTAAGTTGATGTGAGCTATGAATGTTATGCAAGCAACCTGTAGCTGTGCCTGGACTCAT ATGTCTGCATGCTCCTAATGTAGAATTGTTTATTATAGTTATCTTTTTCGCTGAATATAATTGGGTGAAAGTATTCTCGA TTTCAATTTGTGTGCATACTCAACATGTGAAGGTTTCCTTCAAGTGCTTTTATGCGTGACATGCATGTGTGTTTGAGGGG TATTTTGGACTCATATTGTTTGTAGATAAAATGGACAAATGATAAGTATGTTTTTCATGTCTGATTCTATTTTCTGTATT TCTCTTGCTGTTTAAATGGTATCAATTTTTAATTACAAAGATTACATAATATAAAGCATTTAGATGTTCAGAATTCAGAT AGTCAGGTTTGATGCTGAGAAATGGAAGATGGTTTTGGCTTAAGTGCTTAAGTTTTGAACTTGTTTAATACCTCAATGAA GAGGTCGGGGTTTGGGGGACATGTCAGCCAAGTATGATATTTGTGTTGTATACTGCTCGTATCATAATGTTTTAACTTTT AAATTGTGTTGTTGAGCACATTATTACTAAATTATCATGAAATCTGTTAATAATCCTCCACCCTCTTTTGGGGAATTCCT TTATTGCAGTGCTCTTGGTCAGAACCTGGAAACAAGTACCTATGTTTGGGAAATCTCCTTTGCAATTTTCATTTCCATTG CTGGTTTGGTGTTATTTGCCTTCCTCATTGGAAATATGCAGGTTGGTATCAAATATCTCTACAATGTCCTTTAATAAGAC AAAACTGGCAAATACTACTACTTTTTGTTGGTTGTGGAATAATTTGGTTGCCTGCAAGAGATATTTTCCTCTCGAGTTCT GTCCCCTTTTTTAATGATAGCACTTTTTTTGTTTTTTTTTGCTATATATTTTTCCATTGCTAGTTGAATTAGATTTTCCA TTTGGAGACACTGACTTTCTCATGGAATACGACATCATATACAAACTTTCCTTATTATATTTTCTAGGTTGTCCAGATTA ACTAGATTTTATAACCTATGGTTACAATAAAGTCTTATCTTTTCCTAGCTTTTAAGGAAATGCGTGCATTTGTAATTCCA GTTTCAAGTGTCGTTAATTGCCTTGGAATGGAATTGTTGCCTGAAATGGGGTGAAGTGGTGAACCATTATTGTTTATCAA GTTATTGAAATTCTTTGTAGGTAGGCTGCGTAAATGTGTGTTGCTAATGCTCTTATGCTTCCATAACATTATCTCTCCCC CCCCTAATAATCATCTTCTAAATATACCCTAAATCTTGGTCACCAGGTCATAGTTATTTTATTTTCACTTTTCTGATTGA AAAATAGTCAGACTCCTGGGTCATTAAAGGTTCTAAGATTTGACACATTATACTTGCTTTGAAACAGACATATTTGCAGT CAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATAGATTACTTCCTGAC AGCCTTAAAGAAAGAATCAGACGACACGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACCATTTGATTCG TGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGGGTAAGTTTATCCACAT CTCGTAGGATCCATTGGAAATTCAAATTTAAAATAGTAATAGGTAGATAAAAAAGAGCAGTCGAACGGATTTTAATACAA TCCTTGAAAGGTAAACTATTATCAGCACTATTTGAAGCTTTGAAGCTAGTTGCTTTTCTATTAATATTAGCCTATGCTTG CGTCATAGCCGGTCCTAAGCCCGGATAAAGGAGGAAAGTTGTGTTTGGCTTTTGGCTGCCAAAGTAAAACTGACAGACAT CTTTAATACTTTTGTTTGATAAAACTTTTGTTTATTTGTTTGTTTGGTTAAAAATAATAACAACTTTTCTCTAGGTGCCA ATATTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTTTACACGAAAGAAAGCTG CATTGTCCGGGAAGGAGACCCTGTTGATGAAATGCTTTTCATAATGCGCGGCAAGCTATTGACCGTGACAACTAACGGTG GAAGAACGGGCTTCTTTAACTCTGAATTCCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCATTAGAT CCTCATTCCTCATCCAACCTCCCCATCTCAACAAGAACTGTCCAAACTCTTGCAGAAGTGGAAGCCTTTGCTCTGAAAGC TGATGACTTGAAGTTTGTCGCGTCTCAATTCCGGCGTCTTCACAGCAAGCAGCTTCGCCACACTTTCAGGTTCTACTCAC AACAATGGCGCACTTGGGCTGCATGCTTCATACAAGCAGCGTGGAGGCGGTATAGTAAGAGGAAGCTTGAAGAGTCTCTC AAGGAAGAGGAGAATAGGCTGCAAGATGCTTTGGCCAAGCAAGGTGGTACTTCACCTAGTCTTGGTGCCACAATATATGC TTCTAGATTTGCTGCTAATGCACTGAGAGCTTTAAGGAGAAATAACACTAGGAAGACCAGGGTACCAGAGAGATTACCAC CTATTCTGCTTCAGAAACCAGCTGAACCTGATTTTACTGCTGAAGAGCAGTAG
CDS sequence (LotjaGi1g1v0279900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTCAGATTCCAGGACTGGAATTCAGACAAGGGTTCTGAGATAAACTCTCCTGCAATTCACGCATCAGGCTCGCG GAGAATTAGAACTACACTATATTCAGTTTCCGCCAAGTTTCAGAGGGGTTTTGAATCTAGTTCTGAGAGGATAATGAGAT TTGCGAAATCATTCAAATCTTTTCCTCAGAGCAGTGTTCCTGCTAAATGTTTTAGTTCTAGAAAGAAAATCCTTGATCCA CAGGGTCCTTTCCTTCAAAAGTGGAACAAGATATTTGTGCTATCGTGTCTTATTGCTGTATCACTAGATCCTTTGTTCTT CTACGTACCTGTGATTGATGATGACAAGAAATGTCTTTCACGGGACAGAAAAATGGAAACTACGGCAACTGTTTTAAGAT CTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGAACTGGATTCATTGCTCCCTCTTCTCGAGTATTT GGAAGAGGTGTTTTGGTTAAAGATGCTTGGGCAATAGCAAAGAGGTATCTGGCATCATACTTCTTCATTGACATACTTGC CGTTCTTCCCCTCCCACAGGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAACGTG CCTGTAGAACAAATATCACATGTAACAAGGCGGATCTGTATTGTGATGATCGTCGTGTCTTAGGCCCAACAATTTCAACG TTCCTCAATGCTTCTTGCCCAATACAAACTCCAAATACAACACTCTTTAATTTTGGAATATTCCTTGACGCCCTTCAATC AGGGGTTGTAGAGTCAACAGATTTTCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATTTGAGTGCTCTTG GTCAGAACCTGGAAACAAGTACCTATGTTTGGGAAATCTCCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTGTTATTT GCCTTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGA TGCAGAACAGTGGATGTCTCATAGATTACTTCCTGACAGCCTTAAAGAAAGAATCAGACGACACGAGCAGTACAAATGGC AAGAAACCAGAGGTGTTGATGAAGACCATTTGATTCGTGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTT TGCTTGGCTTTGCTGATGAGGGTGCCAATATTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACCGTCTCAA GCCAGTGCTTTACACGAAAGAAAGCTGCATTGTCCGGGAAGGAGACCCTGTTGATGAAATGCTTTTCATAATGCGCGGCA AGCTATTGACCGTGACAACTAACGGTGGAAGAACGGGCTTCTTTAACTCTGAATTCCTCAAGGCTGGTGACTTCTGTGGA GAGGAGCTTCTCACATGGGCATTAGATCCTCATTCCTCATCCAACCTCCCCATCTCAACAAGAACTGTCCAAACTCTTGC AGAAGTGGAAGCCTTTGCTCTGAAAGCTGATGACTTGAAGTTTGTCGCGTCTCAATTCCGGCGTCTTCACAGCAAGCAGC TTCGCCACACTTTCAGGTTCTACTCACAACAATGGCGCACTTGGGCTGCATGCTTCATACAAGCAGCGTGGAGGCGGTAT AGTAAGAGGAAGCTTGAAGAGTCTCTCAAGGAAGAGGAGAATAGGCTGCAAGATGCTTTGGCCAAGCAAGGTGGTACTTC ACCTAGTCTTGGTGCCACAATATATGCTTCTAGATTTGCTGCTAATGCACTGAGAGCTTTAAGGAGAAATAACACTAGGA AGACCAGGGTACCAGAGAGATTACCACCTATTCTGCTTCAGAAACCAGCTGAACCTGATTTTACTGCTGAAGAGCAGTAG
Protein sequence (LotjaGi1g1v0279900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFRFQDWNSDKGSEINSPAIHASGSRRIRTTLYSVSAKFQRGFESSSERIMRFAKSFKSFPQSSVPAKCFSSRKKILDP QGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDDKKCLSRDRKMETTATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVF GRGVLVKDAWAIAKRYLASYFFIDILAVLPLPQVIGAFWYLFSIERETTCWQRACRTNITCNKADLYCDDRRVLGPTIST FLNASCPIQTPNTTLFNFGIFLDALQSGVVESTDFPQKFFYCFWWGLRNLSALGQNLETSTYVWEISFAIFISIAGLVLF AFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLKERIRRHEQYKWQETRGVDEDHLIRDLPKDLRRDIKRHL CLALLMRVPIFEKMDEQLLDAMCDRLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCG EELLTWALDPHSSSNLPISTRTVQTLAEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRY SKRKLEESLKEEENRLQDALAKQGGTSPSLGATIYASRFAANALRALRRNNTRKTRVPERLPPILLQKPAEPDFTAEEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 90 | 90 | - | – | |
PANTHER | 3 | 195 | 193 | 0.0 | – | |
PANTHER | 3 | 195 | 193 | 0.0 | – | |
SUPERFAMILY | 79 | 332 | 254 | 3.14E-17 | – | |
TMHMM | 91 | 110 | 20 | - | – | |
Phobius | 91 | 111 | 21 | - | – | |
Phobius | 112 | 137 | 26 | - | – | |
TMHMM | 131 | 153 | 23 | - | – | |
Phobius | 138 | 156 | 19 | - | – | |
Phobius | 157 | 176 | 20 | - | – | |
Phobius | 177 | 202 | 26 | - | – | |
TMHMM | 180 | 202 | 23 | - | – | |
PANTHER | 194 | 637 | 444 | 0.0 | – | |
PANTHER | 194 | 637 | 444 | 0.0 | – | |
Pfam | 195 | 337 | 143 | 1.2E-9 | ||
Phobius | 203 | 301 | 99 | - | – | |
TMHMM | 302 | 324 | 23 | - | – | |
Phobius | 302 | 324 | 23 | - | – | |
Phobius | 325 | 639 | 315 | - | – | |
Gene3D | 334 | 401 | 68 | 3.0E-14 | – | |
SUPERFAMILY | 339 | 532 | 194 | 2.76E-35 | ||
Gene3D | 408 | 528 | 121 | 2.2E-43 | ||
SMART | 410 | 541 | 132 | 4.6E-16 | ||
CDD | 410 | 541 | 132 | 1.16161E-18 | ||
ProSiteProfiles | 410 | 494 | 85 | 12.969 | ||
Pfam | 430 | 521 | 92 | 1.4E-7 | ||
ProSiteProfiles | 546 | 575 | 30 | 6.504 | ||
Coils | 562 | 582 | 21 | - | – | |
MobiDBLite | 611 | 639 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0279900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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