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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0279900 |
| Transcript ID | LotjaGi1g1v0279900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclic nucleotide-gated channel; TAIR: AT5G53130.1 cyclic nucleotide gated channel 1; Swiss-Prot: sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1; TrEMBL-Plants: tr|A0A151TS64|A0A151TS64_CAJCA Cyclic nucleotide-gated ion channel 1; Found in the gene: LotjaGi1g1v0279900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:68346319..68351411) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGTTATATTATTTATATGGTGTTCAGATTCCAGGACTGGAATTCAGACAAGGGTTCTGAGATAAACTCTCCTGCAA TTCACGCATCAGGCTCGCGGAGAATTAGAACTACACTATATTCAGTTTCCGCCAAGTTTCAGAGGGGTTTTGAATCTAGT TCTGAGAGGATAATGAGATTTGCGAAATCATTCAAATCTTTTCCTCAGAGCAGTGTTCCTGCTAAATGTTTTAGTTCTAG AAAGAAAATCCTTGATCCACAGGGTCCTTTCCTTCAAAAGTGGAACAAGATATTTGTGCTATCGTGTCTTATTGCTGTAT CACTAGATCCTTTGTTCTTCTACGTACCTGTGATTGATGATGACAAGAAATGTCTTTCACGGGACAGAAAAATGGAAACT ACGGCAACTGTTTTAAGATCTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGAACTGGATTCATTGC TCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTAAAGATGCTTGGGCAATAGCAAAGAGGTATCTGGCATCATACT TCTTCATTGACATACTTGCCGTTCTTCCCCTCCCACAGGTGAGGAATACTGTGTCATTAATATATCAAATAATTGCATTA GTAAGTTCAATATAAAACATGTAGACAACTCAAACATATATTGTAACTTGGGGATAAGCTCAGGGCTCCAAGTTTATTAT CTTAGAAGTTTTATGGGCTTAGATTAAAAAGTTTATTTGATCAGATTCATTTAATAAGCTTATTTTGACTCAAAGCTTGT TCCTACATGGCTAGGTGGTGATTCTAATTATCATTCCAAAGCTGAGAGGCTCTGAATCACTGAATACAAAGAACTTGCTA AAATTTGTTGTCTTCTTCCAATATTTTCCACGGTTTATACGAATAATTCCATTATATAAAGAAGTTACAAGGACCTCTGG CATTCTTACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTTGCAAGTCATGTAAGTTTATGCT GTTATTTTTCATTATCAATTTTCTTGTGTAAATTTTTGAAAATTTACTTTTAGTTATATTGCTTTCTACTATATGTATTA TTTATTTTTCCCATTTGATTTCTGAGTTCATCAATTTTTCTTTTTGTCGAAAAAACTCATGATTTTAAGGTCTCTGTTGA ATGTATTGTGGTTTTGTTTTATCTACTACTATATTTCACTTTGCCTGATTACTAGATTAAACAAGTAAAAGTTTTTATAG GTACATATAACTCTTGTGGTGACTATTTGGACACACAACTGGGTTATGATCCCAAACTGTATATTACACTAGTTACATGA TAGAGATGTGGATTACTAGATTCAAATATTAGAGTATTAGGTAAAATTGTCAAGTAAGGATGTTCCTTTCGTGAATTTTT TTGAATTATGATAGCACATTTTGCAAATTCTACAAAGCTGTGATAGGTTGACTGGGTTGGGGGAGAGTTATTTTGTGTTT TTATTTGTGGCAGATTTGATTTTTCAAACCTTTTATTTCCACGATATATAGCATAAGCGTGTTATGAATTATGACACAAT TTAGATATGTAGATCTGTTAATTTCCTTGTTCGTGATTCAAGTTGATGATTTGTAATCATCATTAGCTTGATAAATTTTC TTGCACCCCTATGAAACAGACACTGAAGTAAAAGGAGCGATGCCTTTGTTGGACATACTATTTGACACTTGAATTGGACA ACCACATACACATATTAGAAAGTTGTCTGATGCTATGAAATGCCGCATAATTTTTCTGTTTTTGTTGTGTCCATACTCCA TGCTTTTTAGATCCTGTATATTATTTTTTCAAACTCTTAGGTCCTTGTCATTTCATTTTGGTTCCCATTGTAGTATATTT AGATCTGATATAAATGTTGCATTATTTGAATGAAAATGGTCTTAATAATGAAAATTTAAAATGATATCATCCACTTATCT TTCTGATTGCTACTTTACTTGTTGCTCTTAGGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACAT GCTGGCAACGTGCCTGTAGAACAAATATCACATGTAACAAGGCGGATCTGTATTGTGATGATCGTCGTGTCTTAGGCCCA ACAATTTCAACGTTCCTCAATGCTTCTTGCCCAATACAAACTCCAAATACAACACTCTTTAATTTTGGAATATTCCTTGA CGCCCTTCAATCAGGGGTTGTAGAGTCAACAGATTTTCCACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATT TGAGGTATGCTTTATTGTTTATTTGTTATATGCTATTAATTTTAAGACCACAGAGTAATCATATGTTGCAATGTTCTATG ATTTTGCTGACTTACTATATATTAAGTTGATGTGAGCTATGAATGTTATGCAAGCAACCTGTAGCTGTGCCTGGACTCAT ATGTCTGCATGCTCCTAATGTAGAATTGTTTATTATAGTTATCTTTTTCGCTGAATATAATTGGGTGAAAGTATTCTCGA TTTCAATTTGTGTGCATACTCAACATGTGAAGGTTTCCTTCAAGTGCTTTTATGCGTGACATGCATGTGTGTTTGAGGGG TATTTTGGACTCATATTGTTTGTAGATAAAATGGACAAATGATAAGTATGTTTTTCATGTCTGATTCTATTTTCTGTATT TCTCTTGCTGTTTAAATGGTATCAATTTTTAATTACAAAGATTACATAATATAAAGCATTTAGATGTTCAGAATTCAGAT AGTCAGGTTTGATGCTGAGAAATGGAAGATGGTTTTGGCTTAAGTGCTTAAGTTTTGAACTTGTTTAATACCTCAATGAA GAGGTCGGGGTTTGGGGGACATGTCAGCCAAGTATGATATTTGTGTTGTATACTGCTCGTATCATAATGTTTTAACTTTT AAATTGTGTTGTTGAGCACATTATTACTAAATTATCATGAAATCTGTTAATAATCCTCCACCCTCTTTTGGGGAATTCCT TTATTGCAGTGCTCTTGGTCAGAACCTGGAAACAAGTACCTATGTTTGGGAAATCTCCTTTGCAATTTTCATTTCCATTG CTGGTTTGGTGTTATTTGCCTTCCTCATTGGAAATATGCAGGTTGGTATCAAATATCTCTACAATGTCCTTTAATAAGAC AAAACTGGCAAATACTACTACTTTTTGTTGGTTGTGGAATAATTTGGTTGCCTGCAAGAGATATTTTCCTCTCGAGTTCT GTCCCCTTTTTTAATGATAGCACTTTTTTTGTTTTTTTTTGCTATATATTTTTCCATTGCTAGTTGAATTAGATTTTCCA TTTGGAGACACTGACTTTCTCATGGAATACGACATCATATACAAACTTTCCTTATTATATTTTCTAGGTTGTCCAGATTA ACTAGATTTTATAACCTATGGTTACAATAAAGTCTTATCTTTTCCTAGCTTTTAAGGAAATGCGTGCATTTGTAATTCCA GTTTCAAGTGTCGTTAATTGCCTTGGAATGGAATTGTTGCCTGAAATGGGGTGAAGTGGTGAACCATTATTGTTTATCAA GTTATTGAAATTCTTTGTAGGTAGGCTGCGTAAATGTGTGTTGCTAATGCTCTTATGCTTCCATAACATTATCTCTCCCC CCCCTAATAATCATCTTCTAAATATACCCTAAATCTTGGTCACCAGGTCATAGTTATTTTATTTTCACTTTTCTGATTGA AAAATAGTCAGACTCCTGGGTCATTAAAGGTTCTAAGATTTGACACATTATACTTGCTTTGAAACAGACATATTTGCAGT CAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATAGATTACTTCCTGAC AGCCTTAAAGAAAGAATCAGACGACACGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACCATTTGATTCG TGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGGGTAAGTTTATCCACAT CTCGTAGGATCCATTGGAAATTCAAATTTAAAATAGTAATAGGTAGATAAAAAAGAGCAGTCGAACGGATTTTAATACAA TCCTTGAAAGGTAAACTATTATCAGCACTATTTGAAGCTTTGAAGCTAGTTGCTTTTCTATTAATATTAGCCTATGCTTG CGTCATAGCCGGTCCTAAGCCCGGATAAAGGAGGAAAGTTGTGTTTGGCTTTTGGCTGCCAAAGTAAAACTGACAGACAT CTTTAATACTTTTGTTTGATAAAACTTTTGTTTATTTGTTTGTTTGGTTAAAAATAATAACAACTTTTCTCTAGGTGCCA ATATTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTTTACACGAAAGAAAGCTG CATTGTCCGGGAAGGAGACCCTGTTGATGAAATGCTTTTCATAATGCGCGGCAAGCTATTGACCGTGACAACTAACGGTG GAAGAACGGGCTTCTTTAACTCTGAATTCCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCATTAGAT CCTCATTCCTCATCCAACCTCCCCATCTCAACAAGAACTGTCCAAACTCTTGCAGAAGTGGAAGCCTTTGCTCTGAAAGC TGATGACTTGAAGTTTGTCGCGTCTCAATTCCGGCGTCTTCACAGCAAGCAGCTTCGCCACACTTTCAGGTTCTACTCAC AACAATGGCGCACTTGGGCTGCATGCTTCATACAAGCAGCGTGGAGGCGGTATAGTAAGAGGAAGCTTGAAGAGTCTCTC AAGGAAGAGGAGAATAGGCTGCAAGATGCTTTGGCCAAGCAAGGTGGTACTTCACCTAGTCTTGGTGCCACAATATATGC TTCTAGATTTGCTGCTAATGCACTGAGAGCTTTAAGGAGAAATAACACTAGGAAGACCAGGGTACCAGAGAGATTACCAC CTATTCTGCTTCAGAAACCAGCTGAACCTGATTTTACTGCTGAAGAGCAGTAG
CDS sequence (LotjaGi1g1v0279900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTCAGATTCCAGGACTGGAATTCAGACAAGGGTTCTGAGATAAACTCTCCTGCAATTCACGCATCAGGCTCGCG GAGAATTAGAACTACACTATATTCAGTTTCCGCCAAGTTTCAGAGGGGTTTTGAATCTAGTTCTGAGAGGATAATGAGAT TTGCGAAATCATTCAAATCTTTTCCTCAGAGCAGTGTTCCTGCTAAATGTTTTAGTTCTAGAAAGAAAATCCTTGATCCA CAGGGTCCTTTCCTTCAAAAGTGGAACAAGATATTTGTGCTATCGTGTCTTATTGCTGTATCACTAGATCCTTTGTTCTT CTACGTACCTGTGATTGATGATGACAAGAAATGTCTTTCACGGGACAGAAAAATGGAAACTACGGCAACTGTTTTAAGAT CTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGAACTGGATTCATTGCTCCCTCTTCTCGAGTATTT GGAAGAGGTGTTTTGGTTAAAGATGCTTGGGCAATAGCAAAGAGGTATCTGGCATCATACTTCTTCATTGACATACTTGC CGTTCTTCCCCTCCCACAGGTGGTGATTCTAATTATCATTCCAAAGCTGAGAGGCTCTGAATCACTGAATACAAAGAACT TGCTAAAATTTGTTGTCTTCTTCCAATATTTTCCACGGTTTATACGAATAATTCCATTATATAAAGAAGTTACAAGGACC TCTGGCATTCTTACTGAAACAGCTTGGGCTGGAGCTGCATTCAATCTCTTTCTTTACATGCTTGCAAGTCATGTTATTGG TGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAACGTGCCTGTAGAACAAATATCACATGTAACA AGGCGGATCTGTATTGTGATGATCGTCGTGTCTTAGGCCCAACAATTTCAACGTTCCTCAATGCTTCTTGCCCAATACAA ACTCCAAATACAACACTCTTTAATTTTGGAATATTCCTTGACGCCCTTCAATCAGGGGTTGTAGAGTCAACAGATTTTCC ACAGAAGTTCTTTTATTGTTTTTGGTGGGGCCTAAGAAATTTGAGTGCTCTTGGTCAGAACCTGGAAACAAGTACCTATG TTTGGGAAATCTCCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTGTTATTTGCCTTCCTCATTGGAAATATGCAGACA TATTTGCAGTCAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAACAGTGGATGTCTCATAGATT ACTTCCTGACAGCCTTAAAGAAAGAATCAGACGACACGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACC ATTTGATTCGTGATCTTCCCAAGGATTTAAGAAGGGACATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCA ATATTTGAGAAAATGGATGAGCAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCAGTGCTTTACACGAAAGAAAGCTG CATTGTCCGGGAAGGAGACCCTGTTGATGAAATGCTTTTCATAATGCGCGGCAAGCTATTGACCGTGACAACTAACGGTG GAAGAACGGGCTTCTTTAACTCTGAATTCCTCAAGGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACATGGGCATTAGAT CCTCATTCCTCATCCAACCTCCCCATCTCAACAAGAACTGTCCAAACTCTTGCAGAAGTGGAAGCCTTTGCTCTGAAAGC TGATGACTTGAAGTTTGTCGCGTCTCAATTCCGGCGTCTTCACAGCAAGCAGCTTCGCCACACTTTCAGGTTCTACTCAC AACAATGGCGCACTTGGGCTGCATGCTTCATACAAGCAGCGTGGAGGCGGTATAGTAAGAGGAAGCTTGAAGAGTCTCTC AAGGAAGAGGAGAATAGGCTGCAAGATGCTTTGGCCAAGCAAGGTGGTACTTCACCTAGTCTTGGTGCCACAATATATGC TTCTAGATTTGCTGCTAATGCACTGAGAGCTTTAAGGAGAAATAACACTAGGAAGACCAGGGTACCAGAGAGATTACCAC CTATTCTGCTTCAGAAACCAGCTGAACCTGATTTTACTGCTGAAGAGCAGTAG
Protein sequence (LotjaGi1g1v0279900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVFRFQDWNSDKGSEINSPAIHASGSRRIRTTLYSVSAKFQRGFESSSERIMRFAKSFKSFPQSSVPAKCFSSRKKILDP QGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDDKKCLSRDRKMETTATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVF GRGVLVKDAWAIAKRYLASYFFIDILAVLPLPQVVILIIIPKLRGSESLNTKNLLKFVVFFQYFPRFIRIIPLYKEVTRT SGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQRACRTNITCNKADLYCDDRRVLGPTISTFLNASCPIQ TPNTTLFNFGIFLDALQSGVVESTDFPQKFFYCFWWGLRNLSALGQNLETSTYVWEISFAIFISIAGLVLFAFLIGNMQT YLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLKERIRRHEQYKWQETRGVDEDHLIRDLPKDLRRDIKRHLCLALLMRVP IFEKMDEQLLDAMCDRLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEFLKAGDFCGEELLTWALD PHSSSNLPISTRTVQTLAEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESL KEEENRLQDALAKQGGTSPSLGATIYASRFAANALRALRRNNTRKTRVPERLPPILLQKPAEPDFTAEEQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 90 | 90 | - | – | |
| PANTHER | 3 | 708 | 706 | 0.0 | – | |
| PANTHER | 3 | 708 | 706 | 0.0 | – | |
| SUPERFAMILY | 79 | 403 | 325 | 2.09E-28 | – | |
| Pfam | 88 | 408 | 321 | 4.2E-32 | ||
| TMHMM | 91 | 112 | 22 | - | – | |
| Phobius | 91 | 109 | 19 | - | – | |
| Phobius | 110 | 129 | 20 | - | – | |
| Phobius | 130 | 148 | 19 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 149 | 176 | 28 | - | – | |
| Phobius | 177 | 201 | 25 | - | – | |
| TMHMM | 178 | 200 | 23 | - | – | |
| Phobius | 202 | 212 | 11 | - | – | |
| Phobius | 213 | 232 | 20 | - | – | |
| Phobius | 233 | 251 | 19 | - | – | |
| Phobius | 252 | 273 | 22 | - | – | |
| TMHMM | 252 | 274 | 23 | - | – | |
| Phobius | 274 | 372 | 99 | - | – | |
| TMHMM | 373 | 395 | 23 | - | – | |
| Phobius | 373 | 395 | 23 | - | – | |
| Phobius | 396 | 710 | 315 | - | – | |
| Gene3D | 405 | 472 | 68 | 3.5E-14 | – | |
| SUPERFAMILY | 410 | 603 | 194 | 3.32E-35 | ||
| Gene3D | 479 | 599 | 121 | 2.6E-43 | ||
| CDD | 481 | 612 | 132 | 1.90444E-18 | ||
| ProSiteProfiles | 481 | 565 | 85 | 12.969 | ||
| SMART | 481 | 612 | 132 | 4.6E-16 | ||
| Pfam | 501 | 592 | 92 | 1.6E-7 | ||
| ProSiteProfiles | 617 | 646 | 30 | 6.504 | ||
| Coils | 633 | 653 | 21 | - | – | |
| MobiDBLite | 682 | 710 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0279900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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