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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0285200 |
| Transcript ID | LotjaGi1g1v0285200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectinesterase; TAIR: AT3G49220.1 Plant invertase/pectin methylesterase inhibitor superfamily; Swiss-Prot: sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34; TrEMBL-Plants: tr|G7J6V7|G7J6V7_MEDTR Pectinesterase; Found in the gene: LotjaGi1g1v0285200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69343985..69347386) extracted from Lotus japonicus Gifu genome v1.2.
AACAATTTAATAAATAAATAAAAAGTGATGCAAATCCCTGCTCATTCCTTCCACGGTCACAAACAAAGCTAAAAACAGAA GCAAGAAAAAAAGCCCCTAGTGTGACTTAATCACACCCTCCTTCCTATACATTCAGTGTGCAGACACAGAACTAGTGAAA GAAAGTTGCAGCCAGCTCATTCCTGAGACATTGACCTCACAACAAACTTCACTCATGCATACACCAAAAAAACACAACAC ACTGTTTCTCACTCCCCCACTGTCTCAACTCACCGTCATGTATATAAATAAATGCCTCATCCATTACATACCCATCACTG ACCACAAAATTAGTAGTAAATATTGCTCAATTTTCTGAAAACAACATCTGAAAATTGAAATAAACATGGAGTATGGGAAA TTGGGACCCTCCGATTCAGGTGGTGGTTCCTCTCGCTCCGATGTAGCTCTAGTCAACTCAAGAACTAAAACAACCTCCGG AAGAAAGAAGAAGCTCATTATTCTAGTACTCCTCGCCGTCGTCCTGATCGTCGCCTCCGCCGTCGTACTCACCGCTGTAC GCTCCCGAGCCGGAGGCTCCGGAGCTTCCACCCTCCGGGCGAAACCGACACAGGCAATTTCAAACACGTGCAGCAAAACA CGGTTTCCTTCACTCTGCGTGAAGTCCCTCCTTGATTTTCCGGGATCCACGGCGGCGTCGGAGAGAGACCTCGTCCACAT TTCACTCAACATGACCTTCCAGCATCTCGCCAAGGCGCTCTACTCCTCCGCCGCGATCTCCGCCAGCATGGATCCCCGCG TCCGCGCCGCCTACGACGACTGCCTTGAGCTTCTCGATGATTCCGTTGACGCTCTTGGCCGCTCACTCTCCTCCTTCGCC GCCGGGTCGTCCTCCTCCGACGTGATGACATGGCTCAGCGCCGCGCTCACCAACCAGGACACGTGCGCGGATGGGTTTGC CGACACCTCCGGCGACGTCAAGGACCAGATGGCTGGCAACCTCAAGGATCTTTCAGAGCTCGTCAGCAACTGCCTCGCCA TATTCGCTGGCGCCGGCGATGACTTCTCCGGCGTTCCCATACAGAATCGACGGTTACTCGCAATGCGAGATGATAATTTC CCGAGATGGTTGAACCGGCGAGATAGGAGATTGCTGAGCCTTCCGGTGTCGGCAATGCAAGCCGATGTTGTCGTCTCGAA AGATGGCAACGGAACGGCGAAGACCATCGCCGAAGCTATTAAGAAGGTGCCGGAGTATGGCTCCCGGCGTTTCATTATCT ACGTCAGGGCAGGAAGGTAATTTCATCCTTTCCTTTATTTTTATTTTTCCTGCTTAGGCACTAAGCACCTATTTTTTAAA TAATTATTTTTATTAAGTTGTGAAATGACTTTTTATTTGTTTGTGGATAGTGGATTATGGAGTGATTGCGTAATTGACTT GTTTGTATTAATACAACTGTAATCATGTGAATGTAATATTTTAATGAATGGGTCCTTTTTCATATTCAGTATAGTACTAT TTTGTAGCTTATAAAAAAAAACTAGTACTATTTTCAGTATTTTGTATTGATGTGCCTCCATTCTCATTGATCGATTATGA CATCAAAATTGTATTCACTTTTATTTTGAAGTTAAACATTTCATTCAAAAATCAATCTGGTTCAGACAATTAATTGCGTT AGGTGAAAACACGAACACTTCATGCGGTGCTGACAATGTTGTAATGGTGCCATAAATTCAAATTTAATTTCAGGTATGAA GAGAACAATTTGAAGATAGGGAGAAAGAGAACCAATGTGATGATCATAGGGGATGGAAAGGGCAAGACAGTCATTACAGG TGGCAAAAATGTCATGGATGGCCTCCTCACCACATTTCACACTGCTTCCTTTGGTAAAAACTCCCTAACCTTTTCCTTTG CTAATAATTTTGTATTTTCCTAAATATAAGTAAAATTTTAAAATTGTCAACTTATTTTTCTTAATAATAAAAAATAGTAT GTTAGTAAAAAAAAAAAAGGAAAAAGAGAAACCACGAAACTAGTGGTCCAAAACCATGCACGACACGAAGTAGACCAGAA CAAGTTGCACGTGGCCTACTACTACCATTCTAGGTTGTCATATTTCAAGATTCCTTACTGTTTTTTTAGTCGTTTTTCTA CTTCAATTGAATGTTCCATTCCATCGCCTCTGCCACCTAAATTTACCAAAGAATAAACATAAAAAAAGTTAACGAATTAA AATTCAAAAGAATAAAAAAACGAAAATGATGTTTCTTACAATATCAAGTTATTAACCCTCCTCCTATGTGTCTATGCAGC TGCTTCAGGCGCAGGTTTCATTGCAAGGGACATGACTTTTGAGAACTACGCCGGGCCGGAGAAGCACCAAGCGGTGGCCC TCCGTGTCGGAGCAGACCACGCGGTGGTGTACCGCTGCAATGTGATTGGGTACCAGGACACAATGTATGTACACTCCAAC CGTCAATTCTACCGCGAGTGTGACATCTACGGCACCGTAGACTTCATATTCGGCAATGCCGCGGTAGTTTTCCAAAACTG CAGCCTCTACGCGCGAAAGCCCATGGCCCAACAAAAAAACACCATCACGGCCCAAAATAGAAAGGACCCGAATCAGAACA CGGGTATTTCAATCCATGCCTGTCGGGTCCTAGCCGCAGCAGATCTCAAAGCTTCCAATGAAAGCTTTGAGACCTATCTG GGCCGACCGTGGAAACTTTACTCTAGAACGGTGTACATGATGTCATACATTGGTGATCACGTGCATCAACGTGGGTGGTT GGAGTGGAACACAACGTTTGCTTTGGATACTTTGTATTATGGTGAGTACATGAATTATGGGCCGGGTGCTGCCGTTGGGC AACGGGTCAACTGGCCCGGGTATCGGGTCATTACATCCGCATTGGAAGCGAGCAGGTTCACGGTGGCGCAATTCATATTG GGCGCTACCTGGTTGCCGTCCACCGGAGTGGCATTCCTAAGTGGCTTATCTACGTGAATTATTCCACACTGCAACTTGAT TAAATCTTGTTCCATATATAGTCCAAACCAACCCAATTTGTCCCCATATATTTTTATAATTAGTTTATTTGCAATAATTG TATTAAACTAAAAATATAGTTTATTTTTTGGTACCATGCTTTTTTTTTCACCCCAGTGGTCATGATAAGAAATATAAGTT GTAATGCAATGTCGAATAAAGAATAACAAATGGATTTAATTTAGATGAAGAGTTTTATACATGTATTCAATTAAATTTCT CTATTTTTCTTTTTTCCCCTGGCTGATTGTCTAGAAATGCACTTGCATTGTCATTCCATCGTTGGAAATTAAGAAAGCTA GCCTGAGGTATCACAATGGATTTCATGTCTTCCCCAATTTAG
CDS sequence (LotjaGi1g1v0285200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTATGGGAAATTGGGACCCTCCGATTCAGGTGGTGGTTCCTCTCGCTCCGATGTAGCTCTAGTCAACTCAAGAAC TAAAACAACCTCCGGAAGAAAGAAGAAGCTCATTATTCTAGTACTCCTCGCCGTCGTCCTGATCGTCGCCTCCGCCGTCG TACTCACCGCTGTACGCTCCCGAGCCGGAGGCTCCGGAGCTTCCACCCTCCGGGCGAAACCGACACAGGCAATTTCAAAC ACGTGCAGCAAAACACGGTTTCCTTCACTCTGCGTGAAGTCCCTCCTTGATTTTCCGGGATCCACGGCGGCGTCGGAGAG AGACCTCGTCCACATTTCACTCAACATGACCTTCCAGCATCTCGCCAAGGCGCTCTACTCCTCCGCCGCGATCTCCGCCA GCATGGATCCCCGCGTCCGCGCCGCCTACGACGACTGCCTTGAGCTTCTCGATGATTCCGTTGACGCTCTTGGCCGCTCA CTCTCCTCCTTCGCCGCCGGGTCGTCCTCCTCCGACGTGATGACATGGCTCAGCGCCGCGCTCACCAACCAGGACACGTG CGCGGATGGGTTTGCCGACACCTCCGGCGACGTCAAGGACCAGATGGCTGGCAACCTCAAGGATCTTTCAGAGCTCGTCA GCAACTGCCTCGCCATATTCGCTGGCGCCGGCGATGACTTCTCCGGCGTTCCCATACAGAATCGACGGTTACTCGCAATG CGAGATGATAATTTCCCGAGATGGTTGAACCGGCGAGATAGGAGATTGCTGAGCCTTCCGGTGTCGGCAATGCAAGCCGA TGTTGTCGTCTCGAAAGATGGCAACGGAACGGCGAAGACCATCGCCGAAGCTATTAAGAAGGTGCCGGAGTATGGCTCCC GGCGTTTCATTATCTACGTCAGGGCAGGAAGGTATGAAGAGAACAATTTGAAGATAGGGAGAAAGAGAACCAATGTGATG ATCATAGGGGATGGAAAGGGCAAGACAGTCATTACAGGTGGCAAAAATGTCATGGATGGCCTCCTCACCACATTTCACAC TGCTTCCTTTGCTGCTTCAGGCGCAGGTTTCATTGCAAGGGACATGACTTTTGAGAACTACGCCGGGCCGGAGAAGCACC AAGCGGTGGCCCTCCGTGTCGGAGCAGACCACGCGGTGGTGTACCGCTGCAATGTGATTGGGTACCAGGACACAATGTAT GTACACTCCAACCGTCAATTCTACCGCGAGTGTGACATCTACGGCACCGTAGACTTCATATTCGGCAATGCCGCGGTAGT TTTCCAAAACTGCAGCCTCTACGCGCGAAAGCCCATGGCCCAACAAAAAAACACCATCACGGCCCAAAATAGAAAGGACC CGAATCAGAACACGGGTATTTCAATCCATGCCTGTCGGGTCCTAGCCGCAGCAGATCTCAAAGCTTCCAATGAAAGCTTT GAGACCTATCTGGGCCGACCGTGGAAACTTTACTCTAGAACGGTGTACATGATGTCATACATTGGTGATCACGTGCATCA ACGTGGGTGGTTGGAGTGGAACACAACGTTTGCTTTGGATACTTTGTATTATGGTGAGTACATGAATTATGGGCCGGGTG CTGCCGTTGGGCAACGGGTCAACTGGCCCGGGTATCGGGTCATTACATCCGCATTGGAAGCGAGCAGGTTCACGGTGGCG CAATTCATATTGGGCGCTACCTGGTTGCCGTCCACCGGAGTGGCATTCCTAAGTGGCTTATCTACGTGA
Protein sequence (LotjaGi1g1v0285200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEYGKLGPSDSGGGSSRSDVALVNSRTKTTSGRKKKLIILVLLAVVLIVASAVVLTAVRSRAGGSGASTLRAKPTQAISN TCSKTRFPSLCVKSLLDFPGSTAASERDLVHISLNMTFQHLAKALYSSAAISASMDPRVRAAYDDCLELLDDSVDALGRS LSSFAAGSSSSDVMTWLSAALTNQDTCADGFADTSGDVKDQMAGNLKDLSELVSNCLAIFAGAGDDFSGVPIQNRRLLAM RDDNFPRWLNRRDRRLLSLPVSAMQADVVVSKDGNGTAKTIAEAIKKVPEYGSRRFIIYVRAGRYEENNLKIGRKRTNVM IIGDGKGKTVITGGKNVMDGLLTTFHTASFAASGAGFIARDMTFENYAGPEKHQAVALRVGADHAVVYRCNVIGYQDTMY VHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHACRVLAAADLKASNESF ETYLGRPWKLYSRTVYMMSYIGDHVHQRGWLEWNTTFALDTLYYGEYMNYGPGAAVGQRVNWPGYRVITSALEASRFTVA QFILGATWLPSTGVAFLSGLST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 36 | 36 | - | – | |
| MobiDBLite | 11 | 26 | 16 | - | – | |
| PANTHER | 21 | 581 | 561 | 0.0 | – | |
| PANTHER | 21 | 581 | 561 | 0.0 | – | |
| Phobius | 37 | 58 | 22 | - | – | |
| TMHMM | 37 | 59 | 23 | - | – | |
| TIGRFAM | 48 | 220 | 173 | 6.4E-38 | ||
| Phobius | 59 | 582 | 524 | - | – | |
| SMART | 73 | 219 | 147 | 3.5E-42 | ||
| Gene3D | 75 | 223 | 149 | 4.6E-30 | ||
| SUPERFAMILY | 76 | 220 | 145 | 1.7E-36 | ||
| Pfam | 77 | 219 | 143 | 5.1E-33 | ||
| CDD | 82 | 221 | 140 | 3.93252E-43 | – | |
| Gene3D | 261 | 580 | 320 | 6.3E-125 | ||
| SUPERFAMILY | 262 | 579 | 318 | 1.17E-106 | ||
| Pfam | 267 | 565 | 299 | 5.5E-145 | ||
| ProSitePatterns | 413 | 422 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Enzyme inhibitor activity | Binds to and stops, prevents or reduces the activity of an enzyme. | ||
| Molecular function | Pectinesterase activity | Catalysis of the reaction: pectin + n H2O = n methanol + pectate. | ||
| Biological process | Cell wall modification | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. |
Expression pattern of LotjaGi1g1v0285200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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