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LotjaGi1g1v0288300.1

Overview

Field Value
Gene ID LotjaGi1g1v0288300
Transcript ID LotjaGi1g1v0288300.1
Lotus japonicus genome version Gifu v1.2
Description Protein phosphatase 2C-like protein; TAIR: AT4G27800.1 thylakoid-associated phosphatase 38; Swiss-Prot: sp|P49599|P2C57_ARATH Protein phosphatase 2C 57; TrEMBL-Plants: tr|A0A1J7HR53|A0A1J7HR53_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0288300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:69879992..69885070) extracted from Lotus japonicus Gifu genome v1.2.

TGCAAGGAATCTCATCCCTTCATAGAATCCAATCCGTTAGTGCAGTTAGAGGCTTCTATTAACTCACTTATCATCTACCC GCCACTAAACACCAAAACCCAACACACACTCTCACCTTCACCTTCAAACCCTTCAATGGCTTTGTCAAGCACAAAGCTAC AAAGGTTCCTCTTCAGCAAACTCCATGGCCGTTCCACCATCTCCAAGAACGCCCACAGAAGCAGCTTCACCATCGGAAAC AGCACTACCCGGTGCTGCTCCGCCATAGCCATTGATGCCCCATCATCTATGACTGAGACTCCTGCTATAAGATGGGGATC GGTTTCTCTGCAGGGTCCCCGTGAAGAGATGGAAGATGATATCGTTGTTCGATCTGATGGGCTTGATGGGTTCTCTTTTG CTGCTGTGTTTGATGGCCATGGAGGGTTTTCTTCTGTTGAGTTTCTCAGGTGTTTGTTAAACTTTATTTTGCTCATTGCA TGTTTGTATTTATGCTTAGGTGCAATATTTCATGTGCTTTTTGCTTGCTCATATTTTATATTCATTTGAATGGGGTTTGG GATGTATGAACTATGAACTGATGCTGCTGGGTACAAATTTCTAATTTTTTTTTTGCATAGATTACTTGAAAAGAATTGAA AAGCCCCAAACTATAGCTCACTTCGAAGTTCAAAATTAGTAGCATAGAATTTTTGTTCTGAATACTCGAATTAGATTTCA TTGGTTATCCTCTGATGGCTTCAAGTTGAGAATAGTGGGGGTGAACTTGCAAGTTAATGCTTATTCATGTTTTAATTAAA GTCTTATAGTTGATGAATTTGCAGATTGTGGGTCACTGCCCCTTTTTAAAAATATGATATAAAATTATTAAGCTTCTTGG ATAGTTGGTTCACGACACGAGTTTCAGAGCCTCTGACTAAGAGGTCTAGAGTTGGATTCTTGTTGCCCTCATTATCTAAT AAAAAAAATGGATTTCAGCATAAGATAGATGAGTTAGTGCTTTTGCGCTTGCTTCAAGCCCAATGGGCCATTGTGTGAGC GAGTGAGTTAGAAATATGATATAAAACCATCTTTGTGTTTTCACCCAAAAGCTTAAAATTTTATAATAGTTTGGTTCATG GCACCCCTTGATCTATGCAGTATTTTTCAGCACTTTAACTCATCATATTAAAACTTTATTTACATGTTAGAGAGTTCATC CATCTTTGCACCCACCCGTCTCTGTTTCGTAAGGACATGTGATTACTTTTGATTCTGAATTGATTCTGCTGAATTCATCC ATCATTCCACATAATCTGAATTCAATTGTTCATTTGGTAACTACAGGGATGAGCTGTACAAGGAGTGTCTTGAAGCTTTA CAAGGTGGGTTACTATTAGCTGGGAAAGATTTCAAAGCCATTAAAGAAGCACTAGAGGAGGCATTTATCAAGACTGACGC AAGGTTATTAAAATGGTAAGGCCTTACACTAGTGTAGAGTAGATAGTCTCCCTAAAATGGTTCTAGATAGCCTTACACTT GTTTAGACTTTAGACAGTGTTTCATTTTTGAAGGCTTGAAATGAATGGGGAGGATGATGAATCGGGTGCTACAGCAACTG CAATGTTCACAGGAGATGATGAGCTGCTAATTGCACATATTGGTGACTCATCTGCGGTATGTGACTGTGTATTATCCATC CTTATCATTCTCCCAATCTGACTCCAGATTTTGATGAAAAAACTTTACTTTATATACTTATCGGTTCACATGATCTATCA TGAGGACTAGTCCGATATTCAAATTTAAATTAGGGTATCTAAGAGATTGAATGTTTTGAAAATAACATGACTTCTATTAA AGGTAGTTTATTCTTGTAGGTTCTATGCAGATCTGGAAAAGCAGAAGTGCTGACTAGTCCACACAGACCATGTGGGAGTA ACAAGACTTCCCTCCAAGAAATCAAGAGAATCAGAGAAGCAGGTGGATGGGTGTGTTTTCCTTGTTCCTTCATTCTTTTA CATACTATTTGATCATCTTCTGCAGTCAATATTTTACATAATGAAAACTATATTCTGACTTGAAAATTGAGGTGTTACAA CTTAAGACATGGATAAACTTGAAGAACATATAATATATGTAGTTTCCCACAAACTGAATCAATTTATCTTCTCCCCCTGT AGCCTGTCATGTGATAGGACATTGGTCACTTTTGAAATTCAATATTTCATTGATATTTAGGGTTTCCTTTTCAGGCTTAA TTCATGGTTCAAAACTTCAAATTCGGTTTTATTTTTTTAAGATCATTACTTTTAATTGAGCTGGCACTGGGCCATCATTT TTTTTAATGAAGGTTGTCACCATTCTTTATAAATAAAAGCTCATTACATGGCTGATGATAAATGTATGCTGTCTCTAGCT TAACAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACCAGCGATTCAAAACAAAGAAGAATGAGT ATAGTCCCTAATCTCTACATCATTCCTTCTTGTAGAAAGGAGCTTGTGCTAAATTTTTCTTATAAATGGTCTATCACTGT TCCTAAGGGTTGTCTAACTTTTGCATGTGAAAAAGAATGCTGCAAAAAGGAGTTGAGGAAGGAACATGGTCAAAAAAGTT TATTTCTCGGTAGGTAATTTCCATATTTGTACCTTGTGTTCTTTTGTATTACATTAACATTTAGCAAAGAGAACGGATAT GAGTTGTTTTGCCTTGATTAATATGTAGCTAAAAAATAAACCACTAGAAAGGCAAAAGGGGCCTAAGGAGAATAGGAATT AACATATAATATGGTCAGTCTCCTAGAAAGTGTTAATCATGCTTCTCTGTCCCTGGAAGTCCTGATTTCTATAGGAAGAA TGGTTCAAAGCTTCATTTTGATTATCAAATGCTGAGAAATGAGTAAGTTTGCCACACTGTCTTCTATAGCACATAATCCG GATCTTCAGCTCCTATTTTCATGTGCATCAGCCTCATTCTGCAACATGCAAAGAGGACAATAATTTATACAAGAGGAAGG CTCCGACCATAGGCAGGGTTTGGGGAAGGCTCCGACCATAGGCAGGGTCTGGGGAAGGCTCCGACCATATGGTCTATGCA GTCTTACCCTGTTTTTTACACAAGAGGGTTTTTTAGACAAGAGGCTGTTTCTAGAACTTGTGTTGTGTTTTTTACACCCA GCCTCTTTGTTCTACAATAAGAGGACAATATATGTAGAAATTTCGTATTTTTCATCCTTGAGGCTCTTCTGTCATATTGA CATTGACCTTTAACTGATTTTAAAAACTTCAAATTTTAATATAACAGCAATGCTATAACTACCACTTGTATTTCGTATAG TAACATTTAGTACTTTCCTTAATATAATGATTCTTTTTGACCCAGTGTACAGTTCAACAATGACTTGGTTGTTGCATTCC CTGATGTTTATCAAGTAGCACTTGGCTCAGATACAGAATTTGTAGTACTAGCATCTGATGGCTTATGGGATTACATGAGC AGGTCTGTTGCATGACACTTAGAATCATTTCTGCTACCCTTCTTTTTCTGACTCTCTAGAGAATTACCTTCACAATATTG CTACCATTTGCAGTTCAGATGCAGTTTCTTTTGTGAGGGATCAGCTACGGAAACACGGAAACATACAGGTACACATAATT CTTTATATTTGAGGCCATTTATCCAAGTTGCAGCTATAATTTTTTGCTTGTTCTTATTTCAGCAAGCTTGTGAAGCGCTT GCAAACGCAGCTCTGGTAAATTTTATCGCTTTTTTAGATCACCTTATTTTTCCTCAAAATCAATCCTTGCACCCTAAAGC TACTCATAGAAATTTACCTTCATAATTGATTTTGACTTTAGAATAAATTTTAGAAGAATTTTCAAACATGCACTTAAAAA ATTACACGGGAGCTGTTGTCATCATTTCATGAACTTATTATAATGTTGACACTTAAGAGTTTTATTGCTAACGATGTATA TACTCTGCAGGATCGGCGTACACAGGATAATGTCAGCATTATAATTGCTGATTTAGGGTATGCATTTTTTCAAGCTAATA GAAATAGTTTTTATAGGACAAAATTTGATTGAGAGGTTTAACTGTGAATTCGAAAACACTGAATATTTAGTAAGATGTGG TGTAAAGCATCTAGAAAACTAGTATAAAGTTTATATTTATCTTATATAATCAAATTATTTGATATATATTTTTCCATTAA TTACCCTGTGTCTAATTTTGAGTGCTTGCAGGAGGACAGACTGGCAGAATGCGCCTGTACAGCGACAAAATGTTGTATTT GAGCTAGTCCAAGCGCTTGCTACCATTGGAATTGTGTCTTTTGGAATTTGGTTTTCATCACAGCTTTCTTTATAGATTCA TAAAAAAATAGGCTGTCTTGTACATAACCAAACACATACTTGAACTTCCTGCTTGTATAATCTAAAGTGTACATGTCTCA CATCTCAGAATCTACTTGGTTTAGGGCACTAAATAATTGGTAACAATAAGTATTTGTTCACACTCTAACCGCATTTACCC GAAGATAGAGAAAGAAAAATAATGACAAAATATGGTAGGAATGGCAACCATTATCTCTGGTTTTCAAAGACTTTTGGAAA ATGGCCAGTACATAAAAGAATGAACAGTTTAAGCACACTTAAGTGCGTTTTGTTCAAAAGTTATGAGTTTATGACTATTG ACCACTTGAGTGCATTTTGGTAAAAAGTTAGGACTATTGACCTGAAATTGAACTATCAATTTATCATTTCAGTTAATGAT TATAAATGTTTTGAGGAATCAGACCATGTTTTTCTTAATTGTTATACTTTAAATGTAAATTCTATTTAAACATTTTGATT ATTTTATTAAATATAAAATGAGCTAATTGACTAATTCAGACACTTTTGTCTTTTAAATAAATGGTATATATCAGGATAAA ATTATGTTTGAAAAATAAACGGAATAAAATAATAGGCTCAAGTATAATATTGACAGTGTCCTACATATATGAGGATAAAG ATTCATAATTGAGGTAATATATCAACTATTGTCGGATAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0288300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTTGTCAAGCACAAAGCTACAAAGGTTCCTCTTCAGCAAACTCCATGGCCGTTCCACCATCTCCAAGAACGCCCA CAGAAGCAGCTTCACCATCGGAAACAGCACTACCCGGTGCTGCTCCGCCATAGCCATTGATGCCCCATCATCTATGACTG AGACTCCTGCTATAAGATGGGGATCGGTTTCTCTGCAGGGTCCCCGTGAAGAGATGGAAGATGATATCGTTGTTCGATCT GATGGGCTTGATGGGTTCTCTTTTGCTGCTGTGTTTGATGGCCATGGAGGGTTTTCTTCTGTTGAGTTTCTCAGGGATGA GCTGTACAAGGAGTGTCTTGAAGCTTTACAAGGTGGGTTACTATTAGCTGGGAAAGATTTCAAAGCCATTAAAGAAGCAC TAGAGGAGGCATTTATCAAGACTGACGCAAGGTTATTAAAATGGCTTGAAATGAATGGGGAGGATGATGAATCGGGTGCT ACAGCAACTGCAATGTTCACAGGAGATGATGAGCTGCTAATTGCACATATTGGTGACTCATCTGCGGTTCTATGCAGATC TGGAAAAGCAGAAGTGCTGACTAGTCCACACAGACCATGTGGGAGTAACAAGACTTCCCTCCAAGAAATCAAGAGAATCA GAGAAGCAGGTGGATGGCTTAACAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACCAGCGATTC AAAACAAAGAAGAATGAAATGCTGCAAAAAGGAGTTGAGGAAGGAACATGGTCAAAAAAGTTTATTTCTCGTGTACAGTT CAACAATGACTTGGTTGTTGCATTCCCTGATGTTTATCAAGTAGCACTTGGCTCAGATACAGAATTTGTAGTACTAGCAT CTGATGGCTTATGGGATTACATGAGCAGTTCAGATGCAGTTTCTTTTGTGAGGGATCAGCTACGGAAACACGGAAACATA CAGCAAGCTTGTGAAGCGCTTGCAAACGCAGCTCTGGATCGGCGTACACAGGATAATGTCAGCATTATAATTGCTGATTT AGGGAGGACAGACTGGCAGAATGCGCCTGTACAGCGACAAAATGTTGTATTTGAGCTAGTCCAAGCGCTTGCTACCATTG GAATTGTGTCTTTTGGAATTTGGTTTTCATCACAGCTTTCTTTATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0288300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MALSSTKLQRFLFSKLHGRSTISKNAHRSSFTIGNSTTRCCSAIAIDAPSSMTETPAIRWGSVSLQGPREEMEDDIVVRS DGLDGFSFAAVFDGHGGFSSVEFLRDELYKECLEALQGGLLLAGKDFKAIKEALEEAFIKTDARLLKWLEMNGEDDESGA TATAMFTGDDELLIAHIGDSSAVLCRSGKAEVLTSPHRPCGSNKTSLQEIKRIREAGGWLNNGRICGDIAVSRAFGDQRF KTKKNEMLQKGVEEGTWSKKFISRVQFNNDLVVAFPDVYQVALGSDTEFVVLASDGLWDYMSSSDAVSFVRDQLRKHGNI QQACEALANAALDRRTQDNVSIIIADLGRTDWQNAPVQRQNVVFELVQALATIGIVSFGIWFSSQLSL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 361 361 - –
PANTHER
PTHR13832:SF589
23 363 341 1.4E-154 –
PANTHER
PTHR13832
23 363 341 1.4E-154
IPR015655
SMART
SM00332
49 345 297 1.6E-80
IPR001932
SUPERFAMILY
SSF81606
50 348 299 1.44E-68
IPR036457
CDD
cd00143
58 347 290 6.12767E-76
IPR001932
Gene3D
G3DSA:3.60.40.10
58 354 297 1.8E-90
IPR036457
ProSiteProfiles
PS51746
59 347 289 44.492
IPR001932
Pfam
PF00481
61 340 280 4.4E-56
IPR001932
ProSitePatterns
PS01032
88 96 9 -
IPR000222
Phobius
TRANSMEMBRANE
362 382 21 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
383 388 6 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of
GO:0043169
Molecular function Cation binding Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0288300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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