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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0293100 |
| Transcript ID | LotjaGi1g1v0293100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT3G13540.1 myb domain protein 5; Swiss-Prot: sp|Q38850|MYB5_ARATH Transcription repressor MYB5; TrEMBL-Plants: tr|A0A0B2Q9E9|A0A0B2Q9E9_GLYSO Transcription repressor MYB4; Found in the gene: LotjaGi1g1v0293100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71105827..71107988) extracted from Lotus japonicus Gifu genome v1.2.
GAGATGCTCTGCTTCCTAATTATGAGGTAGAGGATCTTCACGATATATACACTCCCTTTGGTCTTGTAGTAGTGTTCAAA GATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGGCTGCATAGAGGTCCATGGCTTCCTCGTGAAGATGCACTTCTCACCA AATATATTCGAGATCATGGAGAAGGACAGTGGAGATCATTACCAAAAAGAGCTGGTAACACTTCATTATCTCTCTGTCCT GTTTGCTCATTATCACATTTATGATATTTTCTGATTGATCTCTCATATTCTGTTCTTGGTTTGTTTACCCTTCTAAATTA CACATGCATTATTAATTCATTCATGACACTATTTCTTTTTTCCCTCAGATCTTCTGTATTATTGTTATTTTCCATCAAAA ATTGGTTATGTGATAAGTTAATTAATTTGTAAAGGGCTATGTGGTTTGTTTCTTTTACTCTTGTTCTTTGTTTCACCATT ACACAAAAACATATATTTGATAGTCATAGAACATTGGTCATGGAAGTTCTAGCAGCATAGCATGAAAAGTATCGCAAAAG CTTAAAATGCTGAATGAAAATACAGAAATAGTTTATGTTATATTTTTCTAAGAATTATAACATGAAAATAACATTTTAAT TCATGTTGTTTTCCACCTTCAATCATTTGAGTTAACTCCACTTTGAGCTCATTTGATTTAGTTTTTCTTTTAAGTTAATT TGTCTTTTTTAGATAAAGTAAATATTATTAAGTTGGTGCTGGGTGCAGGGCTTCTAAGATGCGGAAAGAGTTGCAGATTG AGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGTAACATAACTCCTGATGAAGATGACCTTATAATCAGAATGCA TTCTCTTCTTGGAAATAGATGGTCACTCATTGCAGGAAGAATACCCGGGCGAACAGATAATGAGATAAAGAACTACTGGA ATACCCACCTCTGTAAAAAGCTCAGAAATCAAGGTACAGATCCAAACACGCACAAGAAGCTACCAGATGATCCTGCTAAA GAGTCAGAAAAGAAGAAGAAGAAGAGAAGTGACAAGAGGAAGAAGAAGAACAGAGCAGAGTCAGAGTCAGAGAGAAACAG AGCAGAGTCAGAGAAGAAGATCTTAGTTTATCTACCAAAACCCACAAGGGTAACATCTCTATCCTCCATTCCCAGAACGG ATAGCACATTGACGTTGAATTCCATTAATTCATACAGTGCTGCAGCATCAACAAGCAAAGAGAAAGAAAAAGAGGTGAAC TTGGAGGGAGAAAATCAAAATGATGATAATGGGTTTGGATTCTTTGGTGAAATGGAATGCTCCTCTGTTATTCCAGATCA TGGGACACTTGAGAAGGTGTATGAAGAGTACTTGCAGCTCTTGAAGGTTGAAGAGAACCATGATCATGATTTAGATTCTT TTGCTGAATCGTTGTTAGCGTAAATGTACCAATTAAGTTAGCTAATGATGGTAAAAATTATTAATGTTGGGGTAAATAAA ATAAGTTCTGCTGGCTCCGGCATCAGCATGTGAATGAATAAAGGTCTCAATCTTTTACCAACAATTTAAGAAATAAACTA TAGTACCAAACTGCCAATGGAAAATGTTTGTACTTTGAAGCTTAGCTTCTCACGCACTTACCTTCCAGCTCATTGATCAG TAGATAGACGACACCGCCATCTACACAATATATTTGGACCAGTAAAAATGTGGCATGTATTAAATAAGTTGACTTTTTTT TTTTTTTCTGAAATGAATTAAAATAATAGGAAATGATTTTCAGAAAATATGATTTTATAAAAATAAAATATTTATTAATT TGCTAACAGGTCCCTCAGTTAATTAGTTACCACAGTAAAAGTAATTCCCTCATTTGAATTGATATGACTATTGATGTTCC CTCTGCTTTGATAACTGATACACTTCAATATTTTCATCATTTCTCAACACCATCTTCATCCTTCCCAAAGCAGAACATTC CAGAGAAAGAGAAGTGTGAGAGACTGAGTGGCGGAGACGACGAGAGTGATCGACGGTGACCGACGGTGGAACGACGGTGG AACGCGACGACGAGGACCGACGGTGGAACGCGACGACGTGAGAGAAGAAGGTGCCGACGATCTTCACGATTTCAACATCA CG
CDS sequence (LotjaGi1g1v0293100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGAGCTCCTTGTTGTTCTAAAGTTGGGCTGCATAGAGGTCCATGGCTTCCTCGTGAAGATGCACTTCTCACCAA ATATATTCGAGATCATGGAGAAGGACAGTGGAGATCATTACCAAAAAGAGCTGGGCTTCTAAGATGCGGAAAGAGTTGCA GATTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGTAACATAACTCCTGATGAAGATGACCTTATAATCAGA ATGCATTCTCTTCTTGGAAATAGATGGTCACTCATTGCAGGAAGAATACCCGGGCGAACAGATAATGAGATAAAGAACTA CTGGAATACCCACCTCTGTAAAAAGCTCAGAAATCAAGGTACAGATCCAAACACGCACAAGAAGCTACCAGATGATCCTG CTAAAGAGTCAGAAAAGAAGAAGAAGAAGAGAAGTGACAAGAGGAAGAAGAAGAACAGAGCAGAGTCAGAGTCAGAGAGA AACAGAGCAGAGTCAGAGAAGAAGATCTTAGTTTATCTACCAAAACCCACAAGGGTAACATCTCTATCCTCCATTCCCAG AACGGATAGCACATTGACGTTGAATTCCATTAATTCATACAGTGCTGCAGCATCAACAAGCAAAGAGAAAGAAAAAGAGG TGAACTTGGAGGGAGAAAATCAAAATGATGATAATGGGTTTGGATTCTTTGGTGAAATGGAATGCTCCTCTGTTATTCCA GATCATGGGACACTTGAGAAGGTGTATGAAGAGTACTTGCAGCTCTTGAAGGTTGAAGAGAACCATGATCATGATTTAGA TTCTTTTGCTGAATCGTTGTTAGCGTAA
Protein sequence (LotjaGi1g1v0293100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRAPCCSKVGLHRGPWLPREDALLTKYIRDHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIR MHSLLGNRWSLIAGRIPGRTDNEIKNYWNTHLCKKLRNQGTDPNTHKKLPDDPAKESEKKKKKRSDKRKKKNRAESESER NRAESEKKILVYLPKPTRVTSLSSIPRTDSTLTLNSINSYSAAASTSKEKEKEVNLEGENQNDDNGFGFFGEMECSSVIP DHGTLEKVYEEYLQLLKVEENHDHDLDSFAESLLA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 228 | 228 | 1.2E-93 | – | |
| PANTHER | 1 | 228 | 228 | 1.2E-93 | ||
| ProSiteProfiles | 9 | 61 | 53 | 14.045 | ||
| SUPERFAMILY | 11 | 108 | 98 | 1.26E-27 | ||
| Gene3D | 12 | 67 | 56 | 2.7E-16 | – | |
| SMART | 13 | 63 | 51 | 1.7E-11 | ||
| Pfam | 14 | 61 | 48 | 1.3E-11 | ||
| CDD | 16 | 61 | 46 | 4.24088E-9 | ||
| ProSiteProfiles | 62 | 116 | 55 | 24.994 | ||
| SMART | 66 | 114 | 49 | 4.4E-14 | ||
| Pfam | 67 | 112 | 46 | 9.9E-14 | ||
| CDD | 71 | 112 | 42 | 9.01723E-12 | ||
| Gene3D | 71 | 116 | 46 | 4.7E-19 | – | |
| MobiDBLite | 116 | 164 | 49 | - | – | |
| MobiDBLite | 120 | 140 | 21 | - | – | |
| Coils | 137 | 166 | 30 | - | – | |
| MobiDBLite | 150 | 164 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0293100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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