Transcript — View — Lotus Base

Overview

Field	Value
Gene ID	LotjaGi1g1v0293300
Transcript ID	LotjaGi1g1v0293300.7
Related isoforms 6	LotjaGi1g1v0293300.1 LotjaGi1g1v0293300.2 LotjaGi1g1v0293300.3 LotjaGi1g1v0293300.4 LotjaGi1g1v0293300.5 LotjaGi1g1v0293300.6
Lotus japonicus genome version	Gifu v1.2
Description	Glucosamine-6-phosphate deaminase; TAIR: AT5G24400.1 NagB/RpiA/CoA transferase-like superfamily protein; Swiss-Prot: sp\|A2Z3C4\|6PGL4_ORYSI Probable 6-phosphogluconolactonase 4, chloroplastic; TrEMBL-Plants: tr\|G7J870\|G7J870_MEDTR Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase; Found in the gene: LotjaGi1g1v0293300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:71166757..71172401) extracted from Lotus japonicus Gifu genome v1.2.

GGAATTTTCCCTTCCTATATAAACTTGTGTTATTGCACAGTGCATTTCTTCTTCCTTATTCTCTCCCTTGATCATCAACC CAAAACGCTGTCGTTTCGATCTCTGCAGCGTTCCTCTCTTCCTTTCACGCGCGACGCCACACCAACCTCTCTCTGAATCT CTGCTGCTTCTGGACACCAAGGTTTTCCCTCTTCCTCTAACCTATTTCATCATTCGTTTCTTCGAATTAGGTTTTCAAGC GCTGAATTGGGGTTCAATTTTGATAAGGGTTTCAATTTCTCTGCAAATTCTGTTTTGATCGATTTTTAATTTTCTTTTTG TGTATTAAGAATGTTGATGGAATATAAGGATTGAAAATGGTGTTTATTAGTTTTAGGTTTTGATGCTTGCATTTTGTTCC TTCTTCAAGTTTGGATTGACTGTATTGGTGAAATCTGTTTGGGGAAAATGTAAATTAGGTATGGGCATGGATTCCCTAAT TTTCAGCGTTTTCTCCTTCGGTTTATCTAGGTGAATGGATTTAGAGGATTGTTGTTTTTAGAGTAGGGAATAGAAAAATA GAGCTAGTTGCACGCGAAGAGCAATAGGAAGAAAGCTGTATAGGTAGACATTCATCTTTACCACATTGATTCAACTCTAA TGCTTGCTTTCCTTTCATAAAATCGATGTAGTAGTATTCCCATTTGTACAACAACCCTGTGGGTCATCATGGCTCACACT CACTCTTCCTTGTTGCTCTCCAGCACTCCGCGAATCCAATTCGCACCACCGTCCCTGTCAATCCCAACCCTGAATCCACC CTCCTCTCGATTCTCCACCCCTCACCCCTTCAGATTCATAGGCCTCACTTCCAAACCCAGCATCAACAAGCTCGTTTGCC AAGCTCAGAAAGCTTCAATGGCGGCAGCGGTTGAGGTTTTCGAGAAGGAGGAGCTCGCGGCGTCTCTGGCCAAATACGTC GCCGATCTTTCCAATAAGTTCACTGCTGAAAGAGGGGCTTTCACTGTTTGTTTGTCTGGTGGGTCTTTGATCAGCTATCT CCGGTGAGTTTCATATGAAGGTTCCTTTTTTGTTGTTGAAACTGAATAATGATGATGATGATGATGATGATGATCAATTG AGCTGAAAAAAATGGGTTTTTTGTTGTTGGGTTTTCAGGAAATTGCTTGAGGCTCCTTATGTTGATTCTCTTGAATGGTC TAAATGGCATGTGTTTTGGTTGGATGAGAGGGTTGTGCCTAAGACTCATGAAGATAGTAACTACAAGCTTGCTTTTGATG GGTTTCTCTCCAAGGTGTGTATGTTATGTTTTGTTGTCCATGACTTTTGTTTTTGGTGTTGGATCATATAATTGTTTATT TTGCTTGAACATTGTCTTCCAATTGTTGAAAATTTATTTTCTGTTCATTATGTGTTGTTGTCAGAAGTTGAGAAATTTAT AGGAGGATTGTGCAAAAACAGCCACTAGATTTCTGTTCATTATGTGTGTAAGATGGGTATTGTTTGACATGTTTAAAGAG AAAGGATGAGTATTGTTATCGCGTGGATGAAAGCCACCAGTCCCTATTTCACTAAATTAAAACCAGATAGATGGAACTAA ATGTAGATCAAATGAAAAAAACAACTATAGCTCAATTAGAAAATGGTATATTTAGTTATACTGAAAATAAAACGGAGCAA TTAATACTAGTAGTTCATGAGAAAGTTGTTAGGGTACTGATTGCATCTGATCCTTCATACAGAACCTAGCTAAATTCCAT TCAAATGTCTAATACCAGATTTAAAGGTTAAATCCTCTATATGAATTAACTACGAGTTCCTTGGTTAGTTAATCATCTAT TAATCAAATGAAGTCCCTAATTCCTTAGTAACTTTTGATGAGAACAAAGGAATGATCAAAATTCAAAACAATAGGGTTTC AGCAAAAGCACATCAAATTACTAAATCAATTCCTTAACATATTAATAGTAGTAAACCTTAGATCTAGCTCATGGCAGAAT TTTTCTATTCATTTGTAAACCCATTTTCAATCCTTGGCTAGATACACCAAAGAAGCATTAATTAAGCAAAGTGCAAACAG TCCTCAAATCTTGGGAAAAGGAGATTAGATTGGAAAGTCGAGCATTCTTTACATAATCCAAAGTGAACTACAACACTAAC TGGGAATTTAGTTGTAAACTAATGCAAAGCAAAAAAAGATTAAGAGAGGAACACCATTGATGAATGAAGGAAGAGATGTT GGTTGATGGAGAAGAGTGGATCACTGATGAAGGAGGGAAGAGATGTTGGTTGGTCGCCCAGAAGGTGTACTTCAATTGCC TTATGTATGCAAACGGCAAAGTGTACTTTCAGATCCTTTCCTTCTTCTATTTAAAGCTACAATTCCATTAAGTGAGATTT TACTGATGGCCCTTAAGCACTGCAAAGCAAAACTCAATTTTTTCGGCCATTGATATAGCATTGGATTCTTAATGCTCAAG CACTGGGTATACAAAGACTCGGAGAAAATTTGCTTGTTTCTTATTATCAAACTAGCTTCACTGCCTTCCTCGCTCCTTTC ATCAATTATATTGCCTCTTCAATGAAATTTAAGTCAGAATATGGACTACCAACCTTAAATTTCATGAAATTAGCATAAAA CTTAATTAAAAATCTACAACTTACAGCAGAACTACAATTGCTTAAGAAAAAGTATATGTTAGGAACAATTGACTAAAAAG ACATCAATATTGTGGTATATGGGCATGTTTTCATTCAGGCTAACTGCAAGATGTTGGGGGCAGTGATATCCCTTCCAAGG ACAAGGGTTGGAGCATCGGTTACTCCACTTGTTGGGGTGGTCTATCCTTATATTTCCATATTTGAAGTGATTAGTACCAA ACCTGAAGGATGTCATGATATCCTTGGAAACTAAAATACATATAAAACGTATTTTAAGTGGTGAAGTGAATGCACAAGTA CAAACATTTCAGAGACTTCTAGTCTACACTGTAACAATGGTCAGGCAAATGAGTCCCCTTGTTGGATAGGATGGTATTAC GTTGAGAAGCTTGTTAAATGTATTGTTCATTCCTATAAATTGATGCCACATGAAAAAAAAAAGAATCGCTATCGGTTTCA AGTTATATGCTATATTTCATTCATGTCTGAGTCTTCTTTTTAATGATTGGATGACAAGTGTACCTCCCTAGTCTTCTGTT TGGATGAGATGATTTTATCTCAATCTAACATGTTGGCACTTTCATCACGGTTCTTTGACAGGTTCCGATTCCACCCGGTA ATGTTTATGCAATTAATGATGCCCTGTCAGCTGAGGGAGCAGCTGATGATTATGAGACATGTCTCAGACACTTGGTCAAG AGCAATGTGATAACTTCATCAGTCAGCGGATTTCCGAAATTTGATCTCATGCTGCTGGGCATGGGCCCTGATGGGCACGT TGCTTCTTTGTTCCCAGGGCATCCTCTTGTGGAGGAGAATAAAAGATGGGTTGCCTTCATCAAGGACTCGCCAAAACCAC CACCAGAGAGAATAACTTTTACCTTTCCGGTGATCAATTCCTCTGCTTATGCTGCACTTGTGGTGACTGGTTCTGGTAAA GCAGATGCAGTTCACTCTGTACTGCGTGGCGGATCGCAAAACTCTAATAAGCTTCCTGCTGCATTGGTTTCACCTGAAGG GGAGTTGAAATGGTTCTTGGACAAAGGTGCAGCCTCCAAGCTGTAGATCCTCCATGTAAGGTGGTTAATCTATATGTTGT GCTAGTGTATTTTTACCTTTACAATATTGAGTTTTGTATGAGAACACATATCTAGTGCTGGATCTCCTTATCTCAGTGAT AGTTAACACCGGGGAGATGAGTGTTTGTATGTCTTTTGTATTAGCAATAAGAGGACTAGAGTGAAGATACAGAGTGCAAT AAAAAGTTTGTTTGCTTCAAAATTTATGAATTCCTATTAATGTGAAGCAATCAAACCACCCTTCCCTCTTCATCCAACCG AGATGCACTCAGCGAAAGCCTGAGTTTTCTTCATGACTCGCCTGATCAGATTCCTATGTCTGGCCAGTCTGGGGATGGAA TCAATGAATGAGGTCACATTTGAAAGAGCTTATTAAACCTTATAACATTAGTGCTTTCGCTGTTTCGCAAGTGTTTGGGG AAAGTTCTGAAAATAATTCTTGACATACCTACCTATAAGTTGTGTTAAGCCTATTTATTTTCATAAGCGGTTCATGGTAG CTAGAATAAGTGTTTACACTAATTATAAGTTATTTTGAGTTTATTTCAATCAACCTATCAAATTAGCTCATGAATTAACT GTTTACTTAATACACATTTATTATCGTAAACACTTAATTAGGCTATTTACTCAAAAACATCATAAGTGGACTTACATTAC TTTCTTTCAAGTCTTGCTTTGAGTTGTGTTCATCCTAGTTTTGAATGTCATGGTTAATTGGTCTCATCTTTGTCATTTAA ATGAATCAAGTGATCATTCCATGCTAATTTTGTTTCTTCCTGATTTTTTCCCCGCAATCAATGCAAGTTATTGACCCCTG CATGTTCCTTGATGCTTTTTGACGGGCATATCTTTTTTTGAGTTGTGTGTGGTATTGTTAAATGATGGATGATACGTTAT TGTATTATAATTTATAAGGACTTGCTTTCTACCACAAGTCCACGAGCGTAGGGATATATATAAATTACAGGAGAGTGCTA AGCAATTTTTTGTTCATCCACACCGTTTCTTATCAGTAATAAGATTCATATAAAATTAGGAGGTGATCTATCAATTAGCA ATAAGTCTACGGTTATAATATAATGAAACTCACATTAATTATAAATAACCAGAAATAGTGTGTTGAAAAAATAATGTTAA GAGGGCGTGTAACTAGAATTTCTATGTAGATTATGCAGAAGAATTACTGAGCTGAAAAGTCAAGATGAGAAGTAAGATGA TAACCGAAGAAAGGAAAACGCAATGCTTGCATTCTTACCTTGTGAGTGAAAGAGTAACTTCCTTTGAGACCCGAGTCATA AGATTCGGTGTTTTTCTTGTTGTATACACCATAACCAAGGTTTAAAGCTCCCACAAGTTCGCATCCATTGGATGGAATTC GGATCATGGTGGCCCAACCCAAGTGCATTAGCAGTTTAGCACTTCACCTTGTTGTTATGTTGTTTGAGCTCTTATTAGCA ATTTTTCTTAGGGCGGGTAGAAATCAGGAATTCGTGACATTCAATTGACATACACTTTAGTGATACCGTGAAGTGAAAAA AAAAATATTGTTAAACACGTGTCTCGATTGAATATCGCGGATTTATGGTGGTTAACAATCATTACTTTTTTTTTCAGGCA TGAAGTTTTCACTCTTTTTTCATTTTGTTTTTCTCTCTCTTAACAAGGCAAAGAACATATACAACTGCTGATGAATGAGT TCATAGCTTTATTTTAACACATAGGACTAGGGGAATTTCCTTTCCTCATCAATAATTCTGAGTTTTCAAATGATTCATTC AGAAATTCGTGACACTCAATTGACATCCACTTTAGTGATAACGTGAAGTGGGAAAAAAACATAAAACATGTTTAGTGGGG GATTTTCAACCGTCGAGAAATGTGTGTTGTGTTTTATTTACACTC

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CDS sequence (LotjaGi1g1v0293300.7) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCACACTCACTCTTCCTTGTTGCTCTCCAGCACTCCGCGAATCCAATTCGCACCACCGTCCCTGTCAATCCCAAC CCTGAATCCACCCTCCTCTCGATTCTCCACCCCTCACCCCTTCAGATTCATAGGCCTCACTTCCAAACCCAGCATCAACA AGCTCGTTTGCCAAGCTCAGAAAGCTTCAATGGCGGCAGCGGTTGAGGTTTTCGAGAAGGAGGAGCTCGCGGCGTCTCTG GCCAAATACGTCGCCGATCTTTCCAATAAGTTCACTGCTGAAAGAGGGGCTTTCACTGTTTGTTTGTCTGGTGGGTCTTT GATCAGCTATCTCCGGAAATTGCTTGAGGCTCCTTATGTTGATTCTCTTGAATGGTCTAAATGGCATGTGTTTTGGTTGG ATGAGAGGGTTGTGCCTAAGACTCATGAAGATAGTAACTACAAGCTTGCTTTTGATGGGTTTCTCTCCAAGGTTCCGATT CCACCCGGTAATGTTTATGCAATTAATGATGCCCTGTCAGCTGAGGGAGCAGCTGATGATTATGAGACATGTCTCAGACA CTTGGTCAAGAGCAATGTGATAACTTCATCAGTCAGCGGATTTCCGAAATTTGATCTCATGCTGCTGGGCATGGGCCCTG ATGGGCACGTTGCTTCTTTGTTCCCAGGGCATCCTCTTGTGGAGGAGAATAAAAGATGGGTTGCCTTCATCAAGGACTCG CCAAAACCACCACCAGAGAGAATAACTTTTACCTTTCCGGTGATCAATTCCTCTGCTTATGCTGCACTTGTGGTGACTGG TTCTGGTAAAGCAGATGCAGTTCACTCTGTACTGCGTGGCGGATCGCAAAACTCTAATAAGCTTCCTGCTGCATTGGTTT CACCTGAAGGGGAGTTGAAATGGTTCTTGGACAAAGGTGCAGCCTCCAAGCTGTAG

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Protein sequence (LotjaGi1g1v0293300.7) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAHTHSSLLLSSTPRIQFAPPSLSIPTLNPPSSRFSTPHPFRFIGLTSKPSINKLVCQAQKASMAAAVEVFEKEELAASL AKYVADLSNKFTAERGAFTVCLSGGSLISYLRKLLEAPYVDSLEWSKWHVFWLDERVVPKTHEDSNYKLAFDGFLSKVPI PPGNVYAINDALSAEGAADDYETCLRHLVKSNVITSSVSGFPKFDLMLLGMGPDGHVASLFPGHPLVEENKRWVAFIKDS PKPPPERITFTFPVINSSAYAALVVTGSGKADAVHSVLRGGSQNSNKLPAALVSPEGELKWFLDKGAASKL

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11054:SF19 View details on PTHR11054:SF19 Search for proteins/transripts with this domain View external data on PTHR11054:SF19	38	311	274	2.0E-131	–
PANTHER	PTHR11054 View details on PTHR11054 Search for proteins/transripts with this domain View external data on PTHR11054	38	311	274	2.0E-131	IPR039104 Show description in modal box View details on IPR039104 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.1360 View details on G3DSA:3.40.50.1360 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1360	60	311	252	2.9E-82	–
TIGRFAM	TIGR01198 View details on TIGR01198 Search for proteins/transripts with this domain View external data on TIGR01198	72	311	240	2.2E-66	IPR005900 Show description in modal box View details on IPR005900 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01182 View details on PF01182 Search for proteins/transripts with this domain View external data on PF01182	73	301	229	8.6E-74	IPR006148 Show description in modal box View details on IPR006148 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF100950 View details on SSF100950 Search for proteins/transripts with this domain View external data on SSF100950	73	311	239	6.28E-70	IPR037171 Show description in modal box View details on IPR037171 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd01400 View details on cd01400 Search for proteins/transripts with this domain View external data on cd01400	74	303	230	1.16608E-100	IPR005900 Show description in modal box View details on IPR005900 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005975 View details of GO:0005975 AmiGO InterPro QuickGO	Biological process	Carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.	Subterm of View details of GO:0044238 View details of GO:0071704
GO:0006098 View details of GO:0006098 AmiGO InterPro QuickGO	Biological process	Pentose-phosphate shunt	The glucose-6-phosphate catabolic process in which, coupled to NADPH synthesis, glucose-6-P is oxidized with the formation of carbon dioxide (CO2) and ribulose 5-phosphate; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses.	Subterm of View details of GO:0006739 View details of GO:0019682 View details of GO:0019693 View details of GO:0051156
GO:0017057 View details of GO:0017057 AmiGO InterPro QuickGO	Molecular function	6-phosphogluconolactonase activity	Catalysis of the reaction: 6-O-phosphono-D-glucono-1,5-lactone + H(2)O = 6-phospho-D-gluconate + H(+).	Subterm of View details of GO:0052689

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0293300.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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LotjaGi1g1v0293300.7