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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0293900 |
| Transcript ID | LotjaGi1g1v0293900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein; TAIR: AT2G46680.1 homeobox 7; Swiss-Prot: sp|P46897|ATHB7_ARATH Homeobox-leucine zipper protein ATHB-7; TrEMBL-Plants: tr|A0A0S3RDW7|A0A0S3RDW7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0293900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71220987..71223675) extracted from Lotus japonicus Gifu genome v1.2.
TCCACATATAAACAAAGATAATTTCTTCCAACATAGAAAAAGATAGTAAGCACTGCACGGTATCTAATCCCATAGGTCAC TATGATCCTTCCATTAGAAGTCCCCAATAACGTGATAGAAATTGCCTTGATATACTTTCTTTATTGCTAGCTATATATTC TGCACCCCATTCCCCCATACCAGACTTTTAAACCAAACAACAATTTCTTTTATACCAAAATCCTCTCAAAAGCTGTGAAA TTCAATTCTTTCTCTCTCACTATCCACATGATGGAAGAAGATGAGAATATTCAGGCATCAATAGGAGAAAATGTAGAAAG CTTCACCTGCAGCTTGGAGCCACCTCAAAACTCAAGGAAGAAAAACAGGAAAGTAGAGAACAAGAGGAGATTCAGTGATG AACAGATTAGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTGGAACCAAGAAAGAAGATTCAGCTTGCAAAAGAT CTTGGATTACAGCCTCGCCAAGTTGCAATATGGTTCCAGAATAGAAGGGCAAGGTGGAAATCAAAAAGGATGGAGAAGGA GTACAGGAAACTCAAAGATGAATATGACAATTTAGCATCAAGGTTTGAGTCCTTAAAGGAAGAGAAGGAGTCTTTGCAAT TAGAGGTAAATCATGTCCTTATAATAAACAAGAATCCGGGTATAAGAAACTAATATCTCTAAAATATATCTGATGTCTAA TTTTGGCAATGAAATATATTGCCATAATTACAGAGAAAAGTATCCTAATCACATCCTAATTAGGAACTGAGATTAAGAAA TATATCTGATATGTAATCAAGGTACTTTATCTCTGTAATCAGAGAGAGATATAGTATCCTAATTAGAGAGAAAAGTTTCC TAAATACATCTTTAATTAGGAAAACTGAAAAAACTATCTCTAATTAGAGAAATATAGTACCTTAATTACATATAGTGCCA TATATATATTTCGTGATCTTGGTAGGGATATAATTTCTCTTGTACTCAAATTCTCTTTTCTTTAACAATGACTCCATACA TACTCTAGGTACATCTTAACTTTGTTATTTGTTTTTCAAACAGTTGCAGAAGCTAAGTTATTTGATGGAAACATCTCATG ATGGTGGGAAGGTTGGCAAAGAAAATAGCACAGAAGATGGGGGTTCAGGAAGTGGGTACAGCAATTGCAGGGGTGAAGGA AAGGTAAGGTTTTCAAATGAGGGTTTGGAGGACAGAGTAGGTGTGTATTCAGATGATCAAAATGAAATCAGCAAAAGGGC TGAGAAACCTGACCAACTTCTGAGAATGGATGATGATCATGATGCAGAGACTCCATTCACATCACTTGAAAAATGGTACA GGGTGGACCCAAGTGGGATCTTAGACCAGGCATGTAACAGTTCTCAGTGGTTAGATTTCTGGACTTGAAAAGTTGCATGC ACCAAACTTCATGTTGCAGCATGTTTGGTGTTTGATGCAACATGGAACTTGAAGCACTGGTACTCAAAACATGGCATCCT CAGCAGGATGTTGAAACTTGAAACTCATGTCTGTTAGGCCAGGAAACTCTCCAAGTTTTGTAGGCTTGTTTTGATAGAGA AGAAATTAAGTTAAGATAGCCTCACTCAATTCATTTGTTCACACTGATTAGGGAGAAGAAATAATGTGCAGTGTTAGTTT CTGTTTATTTATCCTACCATGCCTTTCCAATTTATGTCTTTGCTCTCTTCCATTGATTAAGCAGGATTACCATTTCTTGT TCATCTGAATTTTCACTTTAATAATTTCTTGAGACTCTAAAAGGAGGAGGGTGATTCAAGAGCTAATTCTTGAATAGTCA CCTTTCGGATGCCGACTATTAAGTGGTACATTTAATCACAATTAAGACTCTTCATCTCTTTTGCGAGAGTTCTTCCTGCA CACTCAATCTGCATTATCAATCGAGCTACTCATTGTGGTTGTAAATTTCAGTGTTCAATTTCGATACGAAATTGTAAACT AATCAAACAGGTGTGACTGAGGGCTTAAAGAAAATTCATCAATATAAGTAGTGCACTCGAAACACAACACAAGCAGGGGT ATGATTACGTTGTTATTACAAAAACTTATTATTTTTCAGGGCGAATCTAATTTGTAGAAAATTGTTGAAAAAAATAATAA ATTATGGTTGTGTTATCATGGTTGACATACCAACGGGTTATGTTAGTCTGTGTGTGGATGGTAGCTATCGAAGCCATGAG CATTGTATGGGGGCAGGAGGGTTACTGCGTGATGAGCTAGGGTAGTGGGTGAGAGGTTTCCAGGCTTTCCAAGCAGGAGG GAACCCACTGTCATCAGAAGCTTGGGCCTTGAAAATAGGATTACAGATAACTTGGGATGCAGGCTTCAGAGATGTGATTT GCAATTTGGATTGTGGTGAGCTTCTAAAATCCTTGGGAGAGGTTGACAGCAGACGTTTCCTCCCTATCTTGGATGATATT ATTCAGTTATTGGATAGACCGTGGAGAGTCTCTTTGAGTGCCTTCAGCCGTGATTGTAACATGCCTGCTGACTGGTTAGC CAAAAGAGGAGCTTCGAACCCAGAACTGCCTTTTTGTCTGCTAGATACTCCGCCTATGGAGCTTGAAACCCTCATTATGA GGGATCGTTTGGCTGCTTTGTAGTTGTTCTTGTTGTTGTTTATTTTCCG
CDS sequence (LotjaGi1g1v0293900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGAAGAAGATGAGAATATTCAGGCATCAATAGGAGAAAATGTAGAAAGCTTCACCTGCAGCTTGGAGCCACCTCA AAACTCAAGGAAGAAAAACAGGAAAGTAGAGAACAAGAGGAGATTCAGTGATGAACAGATTAGATCACTAGAATGCATAT TTGAGTCAGAGTCAAAGCTGGAACCAAGAAAGAAGATTCAGCTTGCAAAAGATCTTGGATTACAGCCTCGCCAAGTTGCA ATATGGTTCCAGAATAGAAGGGCAAGGTGGAAATCAAAAAGGATGGAGAAGGAGTACAGGAAACTCAAAGATGAATATGA CAATTTAGCATCAAGGTTTGAGTCCTTAAAGGAAGAGAAGGAGTCTTTGCAATTAGAGTTGCAGAAGCTAAGTTATTTGA TGGAAACATCTCATGATGGTGGGAAGGTTGGCAAAGAAAATAGCACAGAAGATGGGGGTTCAGGAAGTGGGTACAGCAAT TGCAGGGGTGAAGGAAAGGTAAGGTTTTCAAATGAGGGTTTGGAGGACAGAGTAGGTGTGTATTCAGATGATCAAAATGA AATCAGCAAAAGGGCTGAGAAACCTGACCAACTTCTGAGAATGGATGATGATCATGATGCAGAGACTCCATTCACATCAC TTGAAAAATGGTACAGGGTGGACCCAAGTGGGATCTTAGACCAGGCATGTAACAGTTCTCAGTGGTTAGATTTCTGGACT TGA
Protein sequence (LotjaGi1g1v0293900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMEEDENIQASIGENVESFTCSLEPPQNSRKKNRKVENKRRFSDEQIRSLECIFESESKLEPRKKIQLAKDLGLQPRQVA IWFQNRRARWKSKRMEKEYRKLKDEYDNLASRFESLKEEKESLQLELQKLSYLMETSHDGGKVGKENSTEDGGSGSGYSN CRGEGKVRFSNEGLEDRVGVYSDDQNEISKRAEKPDQLLRMDDDHDAETPFTSLEKWYRVDPSGILDQACNSSQWLDFWT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 41 | 41 | - | – | |
| PANTHER | 2 | 240 | 239 | 2.1E-86 | – | |
| PANTHER | 2 | 240 | 239 | 2.1E-86 | – | |
| MobiDBLite | 11 | 27 | 17 | - | – | |
| SUPERFAMILY | 21 | 93 | 73 | 1.11E-18 | ||
| Gene3D | 21 | 107 | 87 | 2.7E-18 | – | |
| SMART | 30 | 97 | 68 | 5.9E-16 | ||
| ProSiteProfiles | 33 | 93 | 61 | 17.589 | ||
| Pfam | 39 | 91 | 53 | 1.6E-17 | ||
| CDD | 39 | 94 | 56 | 1.16334E-14 | ||
| PRINTS | 64 | 73 | 10 | 1.1E-5 | ||
| ProSitePatterns | 68 | 91 | 24 | - | ||
| PRINTS | 73 | 89 | 17 | 1.1E-5 | ||
| Coils | 85 | 133 | 49 | - | – | |
| Pfam | 93 | 133 | 41 | 1.3E-11 | ||
| MobiDBLite | 137 | 164 | 28 | - | – | |
| MobiDBLite | 180 | 204 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi1g1v0293900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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