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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0294500 |
| Transcript ID | LotjaGi1g1v0294500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRF1-interacting factor-like protein; TAIR: AT4G00850.1 GRF1-interacting factor 3; Swiss-Prot: sp|Q93VH6|GIF3_ARATH GRF1-interacting factor 3; TrEMBL-Plants: tr|A0A151RS37|A0A151RS37_CAJCA SS18-like protein 2; Found in the gene: LotjaGi1g1v0294500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71400881..71404485) extracted from Lotus japonicus Gifu genome v1.2.
TGCACATATATGATTTTTGAAAGGTGATCATAATCTTGTCCTGTGGAGAAGAAGAAGTAGCAGCAGCGCTAGGGTTTTGT GTTCTGCTCTGTCATTGTGAAGAAGAACCAAGAGAATGTGGAACGGTGATCCTCCTCCTCTCCCCATCTTACCCACCGAG AAGATTCAAAAGGTGCAAACTTTTTACTTCAACTCATTCCATTACCCCGCATTCATACTCTTACGTTGTTGTTTGTCATC TCTAGATTTGTGGCTACGCTATGTTCCTATTGGGGTTTCATAAAAATGTCACCTTTCCATTGTTCTTGTCATAATCGTGT TCTGTTCACCAAATGTGTATGGTGCTCATCTCTTTCTCTTTCCTTGTACCCTAAGTTATTAATTTGGTTTTGCATTTGGG ATCATTTCATTGTGTAAACTTGCTTTGTTGAATTCATTTGGTGCTATGTGTTCATGATCTCCATTCATAACAGGGGGCAT CAGCTTTTGCAATGGACTAATGGAGTATGGTTCTTTTGGGTGTGTGTGTGTGTTTTCGGTTTCGAAAAGATAAATGCATG ATGCATTTTGGTATAAAGTTTGGACCTTTGATTGGAACAATGGTATGCATAATGCATTTTGGTAAAAAGTTTGGACCTTT GATTGAACAAGTGGTATCCACTATCCATAAAGCACTTTGGTAAAAAGGTTGGACCTTTGATTGAAATAATGGTATGAATA ATGCATTTTGGTATCAAGTTTGGACCTTTGGTTGAAACAATGGTATGAATAATGCATTTTGGTATCAAGTTTGGATCTTT GTTGAAACAATGATTAGTAGAATCTCTGTGTTTGCTTGTCTCATATTGACAAGTTCTTGCTCTTGGTGCAGTTATTGGAG GAGAACAATGAGCTGTTCTTGGCAATAATGGAATTACAAAACCAGGGAAGATTCATTGAAATCACCCAGTAAGTAGTCAA TTATTTTTCATTTGGATTTTGTTGTTGCTTTTAATTGTTTCTAGGTTACCAAGTGGTTTCAGTTCCCTTTCTTGTTTCTG TCTTGGTCCTCTGAATAATTTTATTTGTGCTTCATTATTTTGTTGAATTCAAATTAGCACTCCATGGAAGTTAGCTTGGG AACTCTATACTTCACATTAACATATTGTGCCTATTTGTGCTTAGTTTGTTTCTATCTTCTCCAATACATTGTATTGTGTC AACTAAAACACAGCTTCACTTACTCTCTACTTTCATGAACATATCATCCCTGAAGACAAACAGGGACAATACATCCACTA GTGAAGTTGTGCTTCAGTTTACAAAATACAATTTATGCTTACTCTTGAAAAACCAGGATTATAAAAAGTTGTGTATGTCT TAAATATCAAAGCACATATAATCTGATAAGTTGAACTCAATTAAGATGCAGACAGGGATTAATTAAAAACTATGTTACAA ATATATTTTTCAATTTCCATAATCAGCTAATATTTGGTTGTATCATTACTCCATAGAATAGTTTTATTACAGAATGTTGC AATTGTGAAATTACTTGCTCATGAAACACATTGTAGAAATGGCGTTGCTTGTTTGAAGTATTCTATCTTCTGTACCTTGT TCATTCATGCAGATATTTGTTCTCTCTGGTTAAATATATGTTAGTTTAGAAGAAGAGAGGACTAGAGAAGGCATATTTTA GATGTAAAGTACCCCCATTTTGCTGCTAAAATAGAGTTTATTTGTAAAAAGAGAGTAAAATACTTAAACTAGGTTGCTTT GAGTAGAAACTGAATAGATCTGAGTCAATTGGGATGGTGAATTTGGCTCTAACTGCAGAGTGCACTTTATAGTCTAAAAT GCAGAATTACAATGATGGATTTAGAAAATAGCAGAGTGGATTTTATGACTTCTTTGTTATATAAGTGCATGAATTTAATT ACAATCTCAGTTATTGATTATCCAATCAATGATTTAACTCTATGTTTTACTCTCTTCAATGCACTCATCATCACTTAAGA AGAGTTAAAGGACATGTCTGTTATCTGATCATAAGTTATTGGGGCTGGATTTTTCTTTTAGTCCTTGTACGCATACCTCT AGGATTATGCCCCATAATTTTCAGATGTTGAAAAATGATTCTGCACATCTCAAATTTGTAACAAATAAAACATTGCAGTA AATGCTTTAGATTTTCATACTTTTATGACATGTCACATTGAGGTATATTTAGTGAAGTTATATCATAAGTCAGAACATTC TATATGTTGACTCTAATTATCTCTTTCTCTTTCCATTTGATGAATGTAAGTCATTGCAAGGTGTTCTCATATTTGAATTC TTTTGTATTGCAAGTATCATGTTTTAGCCTTATGTTTTTGTTGCCTTCTCAATTGTTAACTATAGTTTGTGATATTTATT TCATAATATTTAAGCTTGTACATTGACCTATGAAAAAGGCGAGCCTCAGAGCAACGATAAGGTTGCTGCCATGTGACTTT GCGGTCACAGGTCCGGGCCGTAGATTAGCCTCTTGCAGCAATGCAAAGTAAGGTTTGCCTACATTAGATCCACAAAGTGG ATCTGGCCCCTCTTTGTACCTCGCGCATAGAGGGAGCTTTACAGAACCAAGTTTGCCCTTTGTTTTACACTGACCTATGA CATTTTATCCGAATTACCTGGCACAGGTATCAGATCAGGCTTCAGAATAACTTGATATTTCTAGCAAAGCTTGCTGATAA TGATCCTCAAGCAAAGACGCTTTCCCAGGTTCTTAACATCATTAGCTAATTCAGCGAAACCTAGTTTTGAATTGCAACTT TTCCTCACTTGAGAATTGTGTAACAGGAGCAAGACCGACAACAATCTCATGTAGCAATGTCCCAGCAACAACAATGGCAA GGCATGCAGTCTCAACCTCATGTAGCAATGTCCCAGAAACAACAAGGACAAGGCATGCAGCCTCAATCTCATGTAGCAAT GTCCTGGCAACAACAAGGGCAAGGCACGCAGCCTCAACCTCATGTAGCAATGTCCCAGCAACAACCAGATCATGCCTCCT TAACCTTGCCTATGGTGGGTATGAATGATGAGCAGCAGCAGCAAGAGAAACAGCATCTGCCAATTCCTCTACAAAAATCG GGTCTCTCGACTTCAAATCAGCCTTTCCAGATGAATGAGCAGCAGCATAATCTCCAAGCTTTCTTCCGGCAGCAGCTTCA ACATGTCCCCAGAACCAGTGAAAGCATGTATCAGGCCTCTCAAACCAGACTCGGTAGCATGACTGATGCCCCACCAAGCA ACCATTTTGGCTCAGGCATGGGTCCTAGTTGGTCTTAGAGAAGTCATCATCATTATGTTCTGGTGAAGAACTGGAAATAC AAACACCATAAAGATGTTTTCAGCTCAACTGATATCTTTTTTTTTCAACAGTAACTGAATAGATATAAAAGTGAAAAATA CTACTTTTTTATCGGATTAGCTGTTATTTTGTTACCTAATTTTATTGCTACTGCTCAATCTGAGTTCCCTTTAAATCTGA TGACGCTGGGGGTAGTAGGCGCCGCCATATGCAAAAATGTTTACCTTAAGCCTACAGAAGTTAGCCTTGAGATGGTTCCA ATCTC
CDS sequence (LotjaGi1g1v0294500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGAACGGTGATCCTCCTCCTCTCCCCATCTTACCCACCGAGAAGATTCAAAAGTTATTGGAGGAGAACAATGAGCT GTTCTTGGCAATAATGGAATTACAAAACCAGGGAAGATTCATTGAAATCACCCAGTATCAGATCAGGCTTCAGAATAACT TGATATTTCTAGCAAAGCTTGCTGATAATGATCCTCAAGCAAAGACGCTTTCCCAGGAGCAAGACCGACAACAATCTCAT GTAGCAATGTCCCAGCAACAACAATGGCAAGGCATGCAGTCTCAACCTCATGTAGCAATGTCCCAGAAACAACAAGGACA AGGCATGCAGCCTCAATCTCATGTAGCAATGTCCTGGCAACAACAAGGGCAAGGCACGCAGCCTCAACCTCATGTAGCAA TGTCCCAGCAACAACCAGATCATGCCTCCTTAACCTTGCCTATGGTGGGTATGAATGATGAGCAGCAGCAGCAAGAGAAA CAGCATCTGCCAATTCCTCTACAAAAATCGGGTCTCTCGACTTCAAATCAGCCTTTCCAGATGAATGAGCAGCAGCATAA TCTCCAAGCTTTCTTCCGGCAGCAGCTTCAACATGTCCCCAGAACCAGTGAAAGCATGTATCAGGCCTCTCAAACCAGAC TCGGTAGCATGACTGATGCCCCACCAAGCAACCATTTTGGCTCAGGCATGGGTCCTAGTTGGTCTTAG
Protein sequence (LotjaGi1g1v0294500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWNGDPPPLPILPTEKIQKLLEENNELFLAIMELQNQGRFIEITQYQIRLQNNLIFLAKLADNDPQAKTLSQEQDRQQSH VAMSQQQQWQGMQSQPHVAMSQKQQGQGMQPQSHVAMSWQQQGQGTQPQPHVAMSQQQPDHASLTLPMVGMNDEQQQQEK QHLPIPLQKSGLSTSNQPFQMNEQQHNLQAFFRQQLQHVPRTSESMYQASQTRLGSMTDAPPSNHFGSGMGPSWS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 222 | 210 | 5.1E-20 | – | |
| Pfam | 14 | 67 | 54 | 3.3E-18 | ||
| Coils | 17 | 37 | 21 | - | – | |
| MobiDBLite | 67 | 139 | 73 | - | – | |
| MobiDBLite | 201 | 235 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coactivator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator. |
Expression pattern of LotjaGi1g1v0294500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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