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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007726
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 12 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.490s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0036659.1
n.a. SSXT family protein isoform 1 [Theobroma cacao] gi|508719100|gb|EOY10997.1| chr0 11727945 11730554 -
3 domain predictions
1 GO term
Lj0g3v0160829.1
n.a. Calcium-responsive transactivator [Medicago truncatula] gi|357441437|ref|XP_003590996.1| chr0 75568160 75570139 +
3 domain predictions
1 GO term
Lj0g3v0176719.1
n.a. PREDICTED: GRF1-interacting factor 3-like isoform X1 [Cicer arietinum] gi|502136557|ref|XP_004502728.1| chr0 85400547 85403848 +
2 domain predictions
1 GO term
Lj0g3v0188299.1
n.a. PREDICTED: GRF1-interacting factor 3-like [Cicer arietinum] gi|502156743|ref|XP_004510625.1| chr0 91961813 91965940 +
3 domain predictions
1 GO term
Lj0g3v0232329.1
n.a. PREDICTED: GRF1-interacting factor 3-like [Cicer arietinum] gi|502156743|ref|XP_004510625.1| chr0 120577415 120579046 +
2 domain predictions
1 GO term
Lj1g3v4998360.1
n.a. SSXT family protein isoform 1 [Theobroma cacao] gi|508719100|gb|EOY10997.1| chr1 60751671 60755077 +
3 domain predictions
1 GO term
LotjaGi1g1v0294500.1
n.a. GRF1-interacting factor-like protein; TAIR: AT4G00850.1 GRF1-interacting factor 3; Swiss-Prot: sp|Q93VH6|GIF3_ARATH GRF1-interacting factor 3; TrEMBL-Plants: tr|A0A151RS37|A0A151RS37_CAJCA SS18-like protein 2; Found in the gene: LotjaGi1g1v0294500 LjG1.1_chr1 71400881 71404485 -
2 domain predictions
1 GO term
LotjaGi1g1v0783300.1
n.a. GRF1-interacting factor-like protein; TAIR: AT5G28640.1 SSXT family protein; Swiss-Prot: sp|Q8L8A5|GIF1_ARATH GRF1-interacting factor 1; TrEMBL-Plants: tr|I3S8D8|I3S8D8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0783300 LjG1.1_chr1 135643158 135647431 +
2 domain predictions
1 GO term
LotjaGi3g1v0401600.1
n.a. GRF1-interacting factor-like protein; TAIR: AT4G00850.1 GRF1-interacting factor 3; Swiss-Prot: sp|Q93VH6|GIF3_ARATH GRF1-interacting factor 3; TrEMBL-Plants: tr|I3T6C4|I3T6C4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0401600 LjG1.1_chr3 80411340 80416586 -
2 domain predictions
1 GO term
LotjaGi3g1v0401600.2
n.a. GRF1-interacting factor-like protein; TAIR: AT4G00850.1 GRF1-interacting factor 3; Swiss-Prot: sp|Q93VH6|GIF3_ARATH GRF1-interacting factor 3; TrEMBL-Plants: tr|I3T6C4|I3T6C4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0401600 LjG1.1_chr3 80411825 80416597 -
2 domain predictions
1 GO term
LotjaGi3g1v0401600.3
n.a. GRF1-interacting factor-like protein; TAIR: AT4G00850.1 GRF1-interacting factor 3; Swiss-Prot: sp|Q93VH6|GIF3_ARATH GRF1-interacting factor 3; TrEMBL-Plants: tr|I3T6C4|I3T6C4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0401600 LjG1.1_chr3 80412547 80416088 -
2 domain predictions
1 GO term
LotjaGi5g1v0210700.1
n.a. GRF1-interacting factor-like protein; TAIR: AT5G28640.1 SSXT family protein; Swiss-Prot: sp|Q8L8A5|GIF1_ARATH GRF1-interacting factor 1; TrEMBL-Plants: tr|I1LBN5|I1LBN5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0210700 LjG1.1_chr5 51478394 51481405 -
2 domain predictions
1 GO term