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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0295300 |
| Transcript ID | LotjaGi1g1v0295300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein, putative; TAIR: AT2G46780.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q76LC6|RBM24_DANRE RNA-binding protein 24; TrEMBL-Plants: tr|C6T8L2|C6T8L2_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0295300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:71588148..71592314) extracted from Lotus japonicus Gifu genome v1.2.
TATATAAATTTCACATCAGGGGCATTTTAAAAAAAACATTTATCCTTCTCTCTCCCTCTTCACCTCTTCTCTCTTCAAAC TTCTGAAGCCATTACCACAACCGGCTGTACACTTCCAGAAACAGCCAAAGAATATTCTCTTCATCTCCTTCTTCAAAGTG TTCTTCAATTTCTCAACCTTTTCTCCCAGAACTAACCTTTTCTTCCAACACCAGAAGCAACCCAGAACCCCCCAAAATGC AAACCCAGATTCAATCAAAGCCCCATCTTCAAACCCCTAAATACAAAGAGAGATTTGGAGCACGAGAGCATGAGCGACGG AGAGAGAGAGAGGTAGAGAAGATCGAAGCTTCTGCAATTTCTGGGTTGATATGTGTTTTCCCCTGGGTTTGGTTCGATCT GTTACCACCAGACCCAAATCTCACCTGTTCTTCTTCCTCTCCTTCCTGATCAACGCTTAAAATCAAGGTTCGGTTCTCTT GCTCTTCGTCATCTCTCTCTCAATCGCTTCCTCTTCTCTCGATCTCATCAATAGAAGCTTGGGTTTGCAGGTTAGGGTTC CAGTTGGTGGTATATTTGGGGGTTTGAAGATTGCTTGAATTTGGGTGAACGTGAATCCACCAGATGCATGTGGTGTCGCT GATAATGGAGTTTGTGAGTCGATTTGAAGGTAGGAGATATGAGATTTTGGTATGAGCAGGAAGGGTGGTGGTGGTTCTGG CGTTGCAAGAGTTGAAACAGAATGAGGTCGTGGTATTGTTTGGTTGCACGAGATTGATGTTGTTGTCCAATTAGATTTGC TTCTGCAATCCACCGGAAGAATTCTGTTTCTAATCCGTTGAGATTCAGAGGAAAGAAGTGTTATAGAAGATGAAGGAAAA AGTTGAGGGTGGCTTTGGCTTCTCTTCACATGGTTTGAGGATGAAGGTGATGAAAATGTTAGGGAAAGAGGTTGATGAAA ATGCTCACGGTAACGTTGAGAAAGATGAAGAAATTTGGTGACTGAATTGTGAATTGTGACGGAGTTGTGACGGATTATCT CCGTCACTAGTCCCAAAAATAAAAAATTCTATTTCTTAATTAAATTATTAATATTTTTCAATTAAAATATTATTAAATAA TACCACGTCAGCGATCTGTTAGGTTTTAAACGGAAGTTGGACGGAAAACCAATTTTGCAACCGGGTGTAAACTTCAGGGT CGCTTTTTGCTAATTTTGAAGTTTGGGGACGATTTACGCAGGAAGGACAAAGTTGGGGATCAAAAGTGCAATTAAGCCTT ATTTTATACATGGGATATGATATATAGAACTCATAAAACAAATATTTTATGAAATATTAGTTACTTATTTTACATGCTCC ACCTAACAATCGTATCTCTTAATTTTATTTTAATATTCTTACCTCTTTTAATTTGGACGTGAAATTGGAGTGAGAATAGA TTATTTTCCTGCTAAATTATATATTACTCTTCTAATCAGTAATCAATTAATCATGATATGCACAAATATTGCATAAATAA ATTGTTTCCTTTTAAAAAAAAATTACTTGTTCTTGTCTTTTCTTTCTCTTTTTGGCCTTCTCTGTTTTTACTCTCCTACA CTTGATTACTAGTCATAAAGTTTCTTGTTAAGGGAATCTTTGTTGTGGAATCTGAGGAGACATCAGTGTGAAAATCAAGT AGTTTTTCTTTGCTAGAATGAGCCAGAACCAGAACCAGAACCATATGGAAGATTTCCTCAGGGGTCGATTTGATTGATTG TTTACTATTCATACTTTACAACCAACCAAACGGCTATTCTGACTTTTTGATCTCTCTGCCTCTTCGTCTATTGTTAAAGT CTTTGTGAGTTGAATTGAGATGTCACAGCCAAGGCAAAACAAGATGATGATGAGTCCAAACACGACCTATTCTAAGATCT TTGTTGGAGGGTTGGCTTGGGAAACCAAGAGAGACACACTGAAACACTATTTTGATCAGTTTGGGGAGATCATAGAGGCT GTTGTCATCACTGAAAGAAATACTGGAAAATCAAAAGGATATGGCTTTGTAAGTGTAACAACCACTCTTCTAGTCCTTCT GTATTTATAGCATATTTGGATTAACTTATTTTTCCGTAAATTCAATTCTGGCGTGCAGAAGCTATTCTTCCTAGCATTAA TTCTGGATTCAGAATCAATTGTACAAGAATTTTCGCTTCGATTCCTAATGTTTTTGTGTTGTAGGTGACTTTCAAGGACC CAAATTCTGCAACAATGGCTTGCCAGAATCCAAATCCTGTGATTGATGGGAGGAGGGCTAACTGTAATATTGCAGCATTT GGTGCACAAAAAACTGATCCATCAATAACAGGTCTGGTTTCTCACTTTCTTTGTTTTGATTCTAAAAAGTTTTGGTGATT ATTTTGTGAAAACCTGACCTGTATTCTTTGCATGCAAATCCAAACAAACATTTGGCTAATAGGTTGCACTTTAGAATTTG GGTTCTGTCCATGGAACCCCGCATTCACGCAGTCAAACATGTTAAGCTGTCTAATAAGACGATTTACATTTTCAGTTGTA ATAAGTAACTTGGAATAATAACTGGGAATGACAGCTCTACAGTCTTGACCAGAGGACTTAAAATGCTTGAATACGGGATT TCCAGGGATTCCTCTCATCGCAAGGAACCAAATCTTGCTCTTTTTTACTCCTCTTACTGTGGCCTTTTACTACTTTAAAA TGTTTCAGGAAGGTACAAATTCAGAAGCCCTTCATGCAATAGTGTACCAATCCAATTTCAAGGCACCTCTACTTATTATG ATCAGCATATACCCCAGTATTCATATCAGTATCCACTCTACAGGTATGCAACACAAATTGAAACTTGTAGAATGTAAGAT GTCTGGTATTTTTTGTCAACTTCATCTAGCAATATATTATATTCTAAATGAACTTTTCACTCCAACTTTTAGGTATCCTG GTTATCCTCGTCCACAGCATATTCATGACATGGTTAGTTTGCTCAACAAGTAGCCTTTGATATCAGTTTTGGGTTATTAT ATGATAGCATGTTTGTATCAGTTTTTTCTTTCCTCATAATCAATTTGATACCTAGAAGCTACTCAGCTTCTCCCTAGAAT TGAGTTTGACTTCAGAATATATCGAGGAGAATTTCCAAACATACATTACGTGGATATATGTTTGGTTGAAAGCTATGCAG TAAACAAATTTGTTACGTGCGTGTTTGGATCAGCGTTACTTGACAAATTTGTTTCATGGAATGGTTAGTCTGCTCAACAA GTAGCCCTTTCATATCAGTTTTGGGTTACTAATAGTATATTTAGATCAGCTTCTCTATCCTCATATCCTAACACCCTGAC ACCCTCAGAAGCTTCTCCCCATAATTAATTTTAGCTTCAAAATCAATTGTAGAAGGACACCATTTAAACTATTCCTCATT ACTTTTTAATTTGAATGTTGTTGTTTTATGCAGAACTACTATAATGCATATGGTGGACAGCAACTTCCATTTCACTATTT TCCAGCATACTGCCAACCCTTTTATGGTCTTAGTAGACAGTTTGTTCCAACAGCATATGTGAAAAAGACACAATTCCCTG AAATATCACCTCAGGAGTTCACAGTTTGCATATCAGAACCGATTTCACCTTCTCTTTCAATTCCCGGCACAGGTTTATAT GCAATCAATGCTGCCATTTTGTTTTGACTACAAATTTCTTAATCTTAAATAATTTTCTAAATTCACTCTGCATTGGATTA AAGCAGGGTTTATCAAAGAAACAGTAGCTGCAACAGGAGTTGTAAGATCCCCTCCAGAACAGAAATCTTCAGCTTAAGCT CGTGATGAGGAGATTCCATCAACTGATTAGAAGAGAAGAAGCAAAAAAGAAAAATGACACTGCTCAATAAACCAGAATGC TCTAAGAGCATGTTCAATGAGGTGGTCATGCAAGTAACATATAAACATGTTTTTGAATAGGTGATCTTAGGACTCTTGGT TTGTTCAGTGTCTTGAAATTCTTATTTTGAGGAATCTATTGCATTCATTACTTAGTTTTCCTTTTTCTTAATTTTTTTTT CTTTTTAATCATCACGGGATTCCTGCTACACTATAGTTTACAAAGGGGGAATTATAAGGGGAAGCAGTGAGAAATTAAAA TTTTAAA
CDS sequence (LotjaGi1g1v0295300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCACAGCCAAGGCAAAACAAGATGATGATGAGTCCAAACACGACCTATTCTAAGATCTTTGTTGGAGGGTTGGCTTG GGAAACCAAGAGAGACACACTGAAACACTATTTTGATCAGTTTGGGGAGATCATAGAGGCTGTTGTCATCACTGAAAGAA ATACTGGAAAATCAAAAGGATATGGCTTTGTGACTTTCAAGGACCCAAATTCTGCAACAATGGCTTGCCAGAATCCAAAT CCTGTGATTGATGGGAGGAGGGCTAACTGTAATATTGCAGCATTTGGTGCACAAAAAACTGATCCATCAATAACAGGAAG GTACAAATTCAGAAGCCCTTCATGCAATAGTGTACCAATCCAATTTCAAGGCACCTCTACTTATTATGATCAGCATATAC CCCAGTATTCATATCAGTATCCACTCTACAGGTATCCTGGTTATCCTCGTCCACAGCATATTCATGACATGAACTACTAT AATGCATATGGTGGACAGCAACTTCCATTTCACTATTTTCCAGCATACTGCCAACCCTTTTATGGTCTTAGTAGACAGTT TGTTCCAACAGCATATGTGAAAAAGACACAATTCCCTGAAATATCACCTCAGGAGTTCACAGTTTGCATATCAGAACCGA TTTCACCTTCTCTTTCAATTCCCGGCACAGCAGGGTTTATCAAAGAAACAGTAGCTGCAACAGGAGTTGTAAGATCCCCT CCAGAACAGAAATCTTCAGCTTAA
Protein sequence (LotjaGi1g1v0295300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSQPRQNKMMMSPNTTYSKIFVGGLAWETKRDTLKHYFDQFGEIIEAVVITERNTGKSKGYGFVTFKDPNSATMACQNPN PVIDGRRANCNIAAFGAQKTDPSITGRYKFRSPSCNSVPIQFQGTSTYYDQHIPQYSYQYPLYRYPGYPRPQHIHDMNYY NAYGGQQLPFHYFPAYCQPFYGLSRQFVPTAYVKKTQFPEISPQEFTVCISEPISPSLSIPGTAGFIKETVAATGVVRSP PEQKSSA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 104 | 104 | 7.0E-25 | ||
| PANTHER | 3 | 245 | 243 | 6.4E-90 | – | |
| PANTHER | 3 | 245 | 243 | 6.4E-90 | ||
| SUPERFAMILY | 10 | 99 | 90 | 5.78E-24 | ||
| CDD | 18 | 93 | 76 | 5.06751E-42 | – | |
| ProSiteProfiles | 18 | 95 | 78 | 16.227 | ||
| SMART | 19 | 91 | 73 | 6.3E-23 | ||
| Pfam | 20 | 78 | 59 | 1.7E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | MRNA binding | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
Expression pattern of LotjaGi1g1v0295300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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