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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0297900 |
| Transcript ID | LotjaGi1g1v0297900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7LIU0|K7LIU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72208049..72211462) extracted from Lotus japonicus Gifu genome v1.2.
TAAATAAAAAAGCCACGTGGAATTGCTGACTAGGCTAAAATTGAAGTCTGGCAACATTTGTCCTTAATTGAATTAAAAAA AATTCTTAGGGACCCAATTTGATGCGAAATTTTTTCAGGCCCTGGAACTGATTCCCTTTACAATTTCAGGGGCCTTCTGA TGTATTAAGCCAAACATAAAACCAAAAACCACCTCAAATGGGGCCTAAGGGTTGGGCAGGGCTTACCGCTACTAACTTGA TTTCCATTCCATTTCAATGTGAAGTAAAGGAAACAAAACCCTTCTCATCTCTTTCTCTTCTCCTCTGGTACTGAACGAAG GGACATGGAGAACGAGAAGGAGAAGAACCTCAGTTAACCTCTTCCCTCTCTATCATCTACTACTGAGCAAAGCGACATTG GGAAGGAGAAGGAGATGAACCCCTCTCAGCCTCACGAGTCTCTATCTGCTGCTGAATCAAGCAACGTGGAGAACAAGAAG GAGAAGAAGAACCTCACTCTACCTACCGAGTTGATCGATGAAATTCTGCTTCGGTTACCGGTGAGATCTCTACTGCGCTT TAGAAGGGTTTGTAAGTCATGGTTCTCTCTCATTTCCGATCCCCAGTTTGCAAAATCCCATTTCGACTTAAATGCTGCAC CCACTGATCGTCTTCTTCTTGGATTTCTTGATAAGGATAGAGAGAGAGTTGAATCCTTTGATCTAGCTTCATCACTTCAC GACCGTTCCACTCTCAAAGCCCTCTATGTCCCACCTCCATCGGATTTCTCGATTCCTTGTAGACACAACCCTTTGTTTTT CTTCGGTTCTTGCAGGGGTTTTCTGCTTTTAGCCTATGAGAGTACTGGTGATATCATTGTGTGGAATCCAACAACCGGTT TCCATAAAGAAATTCCAGACCGTGGGTTAATGTTTATCTATCTATGTGGTTTTGGGTATGACAGCTCGTCCGATGACTAC TTTGTTGTTATTATAACACCGTTTAGAACATACTTTCCTGAAACTGAAATGCATTGTTTTTCTTTGAAAACTGGTTCATG GTGTGACATTAGGTATGTTAATGTTCATTATATGGAGTATGGACATGATTCTAGACGTGGGGTGTTTATGAATGGCTCTC TTCATTGGCTGGTCATTTATAAGGATACAAAGCTTCCTGTAGTTATTGCCTTTGATCTGGGGGAAAAGAGTTTATCGGAG ATTCATTTGTCATCTGAATTAGCAGCGGAGTTGACACGGAAAGTGTATTATTTGAGGGTACTGGGAGGATGTCTCAGTCT GTGTTACGCAGGTGCCAGTGGTGAGACGGCTGAGATATGGGTCATGAAAGAATATAAAGTGCAATCTTCTTGGACCAAGG CTTTTGTTATCACTAATTCTTGTGACGTTCCTTGCAAACACTTTTATCCAATATGCTTCAATGAAGGTAGTGGAGTTGTT GGAACAAATGGCAGAGGAAGATTGATGAAATTTAATGCCAAGGGAAAACTGCTTGAGCATCTCAAATATGGTCGGAAGTA CAAACAGACTCAAATGTATTTTGAAATGTATAGAGAGATGCTGTTTTTCCCTGGTGAGGATCGATTCCATTGTGTAACTG AAGATGAGGGGAGTGAAGATGCGGAAGAGGAAACAATTGAAGATGAGAAAGCAACTGGAGGTGAGGAAGCGAGAGCAACT GAAGATGAGTATGCAACTGAAGATGAGTATTACTCTGAAGAGGAGTATTCAACTGGAGATGAGTATGCAACTGAAGATGA GGAAGAGGAAGCAACTGAAGATGATGATGGAATTGAAGAAGACGAAACAACTGACGACGAGGAAGAGAACTAAAGATAAC CTACAGTAACTGTCCAAGAAACAAAAAAAACTAGTATGCAGTATTCTCCTACCCTACTTACCTTTTTGTTCATATTCATT TGCATGATAAAAAAAGGAGAAGCTAAATGCAGAATGCATGATACATGAAAATGATACCTTACATACCTTATTGTCCCTTT CTTCCTCTACCTAATAATATTTAGTGATGCTTGAAATTGTAAGGAAATATGAGGTATGGTGACTGATGGATTTAATTCAC CGATGTTTAGAGAAAATATTTAATATCTTGGTCACGTAGAAAAGTTAAAGCCGATTTGAGTGGAAGATATTATAAGAAAA AAATGTTTGCTCTATCAGCATTTGACTAGTCAATTTTAAAAGATAAAATCTTATAAATGATCTCTATGTTGACATTTACA ATTAGCTCACTTTTCTTGCAAGCCACAGTATGCAAGTATATTCTTTACAATTTCCTCAATGTCCTAACTTCTGTTCAGAT CATGATTGTGCTAGCCAGAAGAGAATGCATATACAAAATAAGATATTAAATAACCTCATTTTAATGTAGAAATAGTGTAT GTTTTAGCAGTGATTTCAGTAAGATTGGGTTTAGAGCAAATTTTAAAATGTAATTATGTGTCTGAAATAGGATATATCAA ATCGTAGCAGGAGTTAAGTTAGTGTTTGATATGTAGAATTTTTTTTCCCCTCTTAATATTGTTATTGCATTTGCATTTTG TATACCTTACCCTCTTTTACATGGTTTTCAGGTTAACACTTAGGTGCCTTTACAATTCCTGACTTTTATTATTTAATGTG CTGTTCGATGTTTTCACTTGAAGTTGTGGAGACATTGCGGTCTTAACCATAAGGGAGCTTGAAGATGGGATTGAGTGAAA GGGTTGAAACTAATCAAGTTGTGATATGAATTGATCTTGCGTGTAATGGATTTAACCACATTGTCACATTGGTCTAGTAT TTGATTTGAGAAGTTTTTTATAATAGTTTCATGATATCCCTAAAGATGCTTTGTAGTTTGTATGCCTTTATGGCAAGTAC AGTGCAATGGATGAAAAAAATTAGAATTTCAACTTACTGAATGGGAAGAAAGCTCTCGGTTCCACTGGCAAGGTTATATT TAGCTGCATAGTCTATGACCAGGAGATAGGGCTGATTGATACACGGTGAGGTTTGGTTCAATCCTCACTAATTATAGTAC CCTTTACCTGAAAACTTATCCCTGTAGGTTATTTGTTACTATGCGACTGGTCTATGTGGAAAAGATTATCTTCTATCAAA TTAAGAGTTGAAAACTCTCTTTCTGTGATCTCTTTTGATCTATCTCAGAAGTTACTTTGCAACTCTAGTCTGTTGAAGTC TTGCGTTTGAACCTAACGCATTCCCATGATTAGGAACTGTCTTTAATGTTCCAATTTGTAAACGAACATTCTAGATTCAC GTAGAATCAAACTGCTCTGCAACCTCATTGCAGTGCTTCATTTTTGGTAGATGTTTCTATAATCCAAATGTTAGACATTA TGAGTTTGATCGAGGCTTGTTTCTGTTTGATATATGTATATCCAAATGTTAGAA
CDS sequence (LotjaGi1g1v0297900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACCCCTCTCAGCCTCACGAGTCTCTATCTGCTGCTGAATCAAGCAACGTGGAGAACAAGAAGGAGAAGAAGAACCT CACTCTACCTACCGAGTTGATCGATGAAATTCTGCTTCGGTTACCGGTGAGATCTCTACTGCGCTTTAGAAGGGTTTGTA AGTCATGGTTCTCTCTCATTTCCGATCCCCAGTTTGCAAAATCCCATTTCGACTTAAATGCTGCACCCACTGATCGTCTT CTTCTTGGATTTCTTGATAAGGATAGAGAGAGAGTTGAATCCTTTGATCTAGCTTCATCACTTCACGACCGTTCCACTCT CAAAGCCCTCTATGTCCCACCTCCATCGGATTTCTCGATTCCTTGTAGACACAACCCTTTGTTTTTCTTCGGTTCTTGCA GGGGTTTTCTGCTTTTAGCCTATGAGAGTACTGGTGATATCATTGTGTGGAATCCAACAACCGGTTTCCATAAAGAAATT CCAGACCGTGGGTTAATGTTTATCTATCTATGTGGTTTTGGGTATGACAGCTCGTCCGATGACTACTTTGTTGTTATTAT AACACCGTTTAGAACATACTTTCCTGAAACTGAAATGCATTGTTTTTCTTTGAAAACTGGTTCATGGTGTGACATTAGGT ATGTTAATGTTCATTATATGGAGTATGGACATGATTCTAGACGTGGGGTGTTTATGAATGGCTCTCTTCATTGGCTGGTC ATTTATAAGGATACAAAGCTTCCTGTAGTTATTGCCTTTGATCTGGGGGAAAAGAGTTTATCGGAGATTCATTTGTCATC TGAATTAGCAGCGGAGTTGACACGGAAAGTGTATTATTTGAGGGTACTGGGAGGATGTCTCAGTCTGTGTTACGCAGGTG CCAGTGGTGAGACGGCTGAGATATGGGTCATGAAAGAATATAAAGTGCAATCTTCTTGGACCAAGGCTTTTGTTATCACT AATTCTTGTGACGTTCCTTGCAAACACTTTTATCCAATATGCTTCAATGAAGGTAGTGGAGTTGTTGGAACAAATGGCAG AGGAAGATTGATGAAATTTAATGCCAAGGGAAAACTGCTTGAGCATCTCAAATATGGTCGGAAGTACAAACAGACTCAAA TGTATTTTGAAATGTATAGAGAGATGCTGTTTTTCCCTGGTGAGGATCGATTCCATTGTGTAACTGAAGATGAGGGGAGT GAAGATGCGGAAGAGGAAACAATTGAAGATGAGAAAGCAACTGGAGGTGAGGAAGCGAGAGCAACTGAAGATGAGTATGC AACTGAAGATGAGTATTACTCTGAAGAGGAGTATTCAACTGGAGATGAGTATGCAACTGAAGATGAGGAAGAGGAAGCAA CTGAAGATGATGATGGAATTGAAGAAGACGAAACAACTGACGACGAGGAAGAGAACTAA
Protein sequence (LotjaGi1g1v0297900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNPSQPHESLSAAESSNVENKKEKKNLTLPTELIDEILLRLPVRSLLRFRRVCKSWFSLISDPQFAKSHFDLNAAPTDRL LLGFLDKDRERVESFDLASSLHDRSTLKALYVPPPSDFSIPCRHNPLFFFGSCRGFLLLAYESTGDIIVWNPTTGFHKEI PDRGLMFIYLCGFGYDSSSDDYFVVIITPFRTYFPETEMHCFSLKTGSWCDIRYVNVHYMEYGHDSRRGVFMNGSLHWLV IYKDTKLPVVIAFDLGEKSLSEIHLSSELAAELTRKVYYLRVLGGCLSLCYAGASGETAEIWVMKEYKVQSSWTKAFVIT NSCDVPCKHFYPICFNEGSGVVGTNGRGRLMKFNAKGKLLEHLKYGRKYKQTQMYFEMYREMLFFPGEDRFHCVTEDEGS EDAEEETIEDEKATGGEEARATEDEYATEDEYYSEEEYSTGDEYATEDEEEEATEDDDGIEEDETTDDEEEN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| Gene3D | 12 | 112 | 101 | 1.1E-9 | – | |
| PANTHER | 21 | 382 | 362 | 1.5E-89 | – | |
| PANTHER | 21 | 382 | 362 | 1.5E-89 | – | |
| ProSiteProfiles | 23 | 69 | 47 | 11.485 | ||
| SUPERFAMILY | 29 | 161 | 133 | 2.88E-18 | ||
| SMART | 29 | 69 | 41 | 8.4E-10 | ||
| Pfam | 29 | 65 | 37 | 2.8E-9 | ||
| TIGRFAM | 131 | 322 | 192 | 8.1E-27 | ||
| Pfam | 229 | 324 | 96 | 3.5E-5 | ||
| MobiDBLite | 396 | 472 | 77 | - | – | |
| MobiDBLite | 398 | 412 | 15 | - | – | |
| MobiDBLite | 423 | 472 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0297900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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