Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0298600 |
| Transcript ID | LotjaGi1g1v0298600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT4G12560.1 F-box and associated interaction domains-containing protein; Swiss-Prot: sp|Q9SU30|CPR30_ARATH F-box protein CPR30; TrEMBL-Plants: tr|K7L1T9|K7L1T9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0298600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72256456..72259209) extracted from Lotus japonicus Gifu genome v1.2.
TGGGGATGCATTGGAATGTCCACGTTAAGTTTTGAGGCTTAAAGTGAAAGCTGGCAGTGTCATGTAGGATATAAGATGAT TTTATATATCAAGCATGCAATGATAGATTCATATATGTCTTGATTCATTACACTGTAAGGTCACGAAACTAAACCCTCGT TTTCCCTGCTGCCTATAGAGGGAAGCGGCATGGCGAACGATGAGAAGAAGAACCTCACTCTTCCTCTACCTCTATCTCGC GATTTGATAGTTGAAATTCTGCTGAGGTTACCGGTGAGATCTCTACTGCGCTTGAAATGCGTTTGTAGGTCATTCTTTTT CATTTCTGATCCCCAATTTGCTAAATACCATTTTGACCTTAGTGTTGAACCCACACATCGTCTTCTTCTTCGATTTCTCA ATGAGGATAAAGTTGAATCCTTTGATCTAGATTCATCACTTGACGACAACTCTGCTGTTGTAACCCTCAATCTTCCTCCT CCATGCATGTCTTGTGATCAGAACTCTTTAAAATTCTTGGGTTCTTGCAGGGGGCTTATGCTTTTAGCCTATGAGTATAA ACGGCTTATTGTGTGGAATCCGTGTACGGGTTTCCATAAACAAATTCTAACTGGTTGTGATTTCTTGCTAGGCTCTCTGT ATGGTTTGGGGTATGACAAGTCAACTGATGACTATTTTGTAGTGATTATAGGACCGGTTTGGTCGAATGCTAAAATTCAG ACTGTTTCTGTGAAAACCAATTCATGGGATTTCAAGGATGTTAATGCTCAATATACAGATCTTGGATATCATTACAGACA TGGGGTGTTCTTGAACGACTCTCTTCATTGGCTGGTTTTTTCTAAGGATGCCAGTTTTCTTGTAGTTATTGCCTTTGATT TGTTAGACAAGGGTTTATCAGAGATTCCTCTGTTACCTGAATTAGCAGCGCCTGTGTTAACAGCGGAGGGTGTACCCAAA TTTTATCATGCGAGGGTACTAGGAGGATGCCTCAGTCTGTGTTACAAAGGTGGTAGGCGTGATAGGGCTGAGATATGGGT CATGAAAGAATATAAAGTGCAGTCTTCTTGGACCAAGGCTTTTGTTGTGACTGATTATGACATTCCTGGCATACACTTTT ACCCGATACGCTTCATTGAAGGTGGCGGAGTTTTTGGATCAAATGGCAATGAAAGATTGATGAAATTTAATGCTGAGGGA AAACTGCTTGAGCATCACAAATATAGGGAGGAAATAGAAAATGTTCAAAATTATTTTGGAATGTTTAGAGAGAGTGATTT CAAAAATATTCAAAAATATTTTGAAATGTACACAGAGAGTCTGCTATTATTCCCTGGTGAACAACCACTCCTTCGTGACA AAAAGGAAGCAACGGAAGTTGAGGAAGCAATGGAAGTAAAGGCAGAGGGAGCTAGTGGGCTGCCACTCTATAGTGTAAAA TCACTCACTTGTGACTTCAAGGAAGCAGATGAAGAGATGGTGGAAGTATCTGATGATGACATAGAAGAGGAATCAGAAGA GGAATCGACTGAAGAGAAGGAAGCAACTGAAGATGAGGAAGCGGAATCTACTGAAGATGACAATATCAACTGTCCAAAAA GGAAAAATTAGTAAGCAATATTCTCAACCCTGTTTACCTTTTTATTTTGCATTATAAAAATTGAAAAAGCTAAATGCAGA ATACATGATACTTATAAATGGTATCTTAGTACCTTGCGCATACTCTCCCTGTATTCCTAGTAATAATATTTCATTTATTT TTGTATAAATTTGATACTTGAAAGTAGAAATTGCAAGGAAAGATAAGTTTTGGTGGTAGATTTATTTCACTGATGATTAC AGAATATATTTAAGAAAAAATGTTTGCTCTATTACTTATGTTCTTCTGTTATATTTGACTCGATGTTAAAAATAAAATCT TATAAAATATCTATCATTTTGTATTATCCTCTTTATTAATGTTGTCATTGCATTTGCATTCTGTTTCACTTACCCTCTTT TACATGGTTTTCAGATTAGCACATAGGTGGCTTTACAATTCCTGGTTTTTTTATTTGATGTTCTGTTCGGTGTTTTGACT TGAAGTTGTGGAGATATTGTGGTCTTAACCATATGTTAGCTTGGAGATGGGATAAAGTAAAAGGGATGAAAATGATCAAG TATTGAACTATTGATATGAATTGATCTTGCGTAGAATTGATTTGACCATTTTAGCAATTAGGTGGCTTTACAATTCCAAC TGTTTTTTTTTATTTAATGTTATGTTCGGTGTTTTGACTTGAAGTTGTGGAGATATTGTGGTCTTAACCATATGTTAGCT TGGAGATGGGATAAAGTATAAGGGATGAAACTAATCAAGTATTGATATGAATTGATCTTGCGTAGTATTGATTTGACCAT TTTGTCATATTGATCTAGATCATCAAGTATTTGTTAAGTTTCATGATTACCCCTAAATATACTCTGTAGTTTGTATGGCT ATGGCAATGACAGTGTAATGGATGAAAGAAATTAGTGTTTCAGCTCAACTGGCTAATGTCTCCATTCTTATTTTCTCTTC CTTTATCAAGAATATATCTATTGCTGAATGGGAAAAAGGTCCAGTGCTCACTGTCAAAATTATATTTTGCCCCATAATCT ATATATGACCAAAAGATATAATCAGGGAGGTTCACACTCTTACAGCTACAGCCGTATTTTTTTATGGTTATATTTGAACT TGATAGCATAAATTTTTTGTATTGAACATAGGGG
CDS sequence (LotjaGi1g1v0298600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAACGATGAGAAGAAGAACCTCACTCTTCCTCTACCTCTATCTCGCGATTTGATAGTTGAAATTCTGCTGAGGTT ACCGGTGAGATCTCTACTGCGCTTGAAATGCGTTTGTAGGTCATTCTTTTTCATTTCTGATCCCCAATTTGCTAAATACC ATTTTGACCTTAGTGTTGAACCCACACATCGTCTTCTTCTTCGATTTCTCAATGAGGATAAAGTTGAATCCTTTGATCTA GATTCATCACTTGACGACAACTCTGCTGTTGTAACCCTCAATCTTCCTCCTCCATGCATGTCTTGTGATCAGAACTCTTT AAAATTCTTGGGTTCTTGCAGGGGGCTTATGCTTTTAGCCTATGAGTATAAACGGCTTATTGTGTGGAATCCGTGTACGG GTTTCCATAAACAAATTCTAACTGGTTGTGATTTCTTGCTAGGCTCTCTGTATGGTTTGGGGTATGACAAGTCAACTGAT GACTATTTTGTAGTGATTATAGGACCGGTTTGGTCGAATGCTAAAATTCAGACTGTTTCTGTGAAAACCAATTCATGGGA TTTCAAGGATGTTAATGCTCAATATACAGATCTTGGATATCATTACAGACATGGGGTGTTCTTGAACGACTCTCTTCATT GGCTGGTTTTTTCTAAGGATGCCAGTTTTCTTGTAGTTATTGCCTTTGATTTGTTAGACAAGGGTTTATCAGAGATTCCT CTGTTACCTGAATTAGCAGCGCCTGTGTTAACAGCGGAGGGTGTACCCAAATTTTATCATGCGAGGGTACTAGGAGGATG CCTCAGTCTGTGTTACAAAGGTGGTAGGCGTGATAGGGCTGAGATATGGGTCATGAAAGAATATAAAGTGCAGTCTTCTT GGACCAAGGCTTTTGTTGTGACTGATTATGACATTCCTGGCATACACTTTTACCCGATACGCTTCATTGAAGGTGGCGGA GTTTTTGGATCAAATGGCAATGAAAGATTGATGAAATTTAATGCTGAGGGAAAACTGCTTGAGCATCACAAATATAGGGA GGAAATAGAAAATGTTCAAAATTATTTTGGAATGTTTAGAGAGAGTGATTTCAAAAATATTCAAAAATATTTTGAAATGT ACACAGAGAGTCTGCTATTATTCCCTGGTGAACAACCACTCCTTCGTGACAAAAAGGAAGCAACGGAAGTTGAGGAAGCA ATGGAAGTAAAGGCAGAGGGAGCTAGTGGGCTGCCACTCTATAGTGTAAAATCACTCACTTGTGACTTCAAGGAAGCAGA TGAAGAGATGGTGGAAGTATCTGATGATGACATAGAAGAGGAATCAGAAGAGGAATCGACTGAAGAGAAGGAAGCAACTG AAGATGAGGAAGCGGAATCTACTGAAGATGACAATATCAACTGTCCAAAAAGGAAAAATTAA
Protein sequence (LotjaGi1g1v0298600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANDEKKNLTLPLPLSRDLIVEILLRLPVRSLLRLKCVCRSFFFISDPQFAKYHFDLSVEPTHRLLLRFLNEDKVESFDL DSSLDDNSAVVTLNLPPPCMSCDQNSLKFLGSCRGLMLLAYEYKRLIVWNPCTGFHKQILTGCDFLLGSLYGLGYDKSTD DYFVVIIGPVWSNAKIQTVSVKTNSWDFKDVNAQYTDLGYHYRHGVFLNDSLHWLVFSKDASFLVVIAFDLLDKGLSEIP LLPELAAPVLTAEGVPKFYHARVLGGCLSLCYKGGRRDRAEIWVMKEYKVQSSWTKAFVVTDYDIPGIHFYPIRFIEGGG VFGSNGNERLMKFNAEGKLLEHHKYREEIENVQNYFGMFRESDFKNIQKYFEMYTESLLLFPGEQPLLRDKKEATEVEEA MEVKAEGASGLPLYSVKSLTCDFKEADEEMVEVSDDDIEEESEEESTEEKEATEDEEAESTEDDNINCPKRKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 355 | 344 | 2.5E-79 | – | |
| PANTHER | 12 | 355 | 344 | 2.5E-79 | – | |
| SUPERFAMILY | 13 | 70 | 58 | 9.03E-10 | ||
| Pfam | 15 | 42 | 28 | 3.8E-4 | ||
| SMART | 15 | 57 | 43 | 0.0015 | ||
| TIGRFAM | 112 | 317 | 206 | 1.3E-20 | ||
| Pfam | 205 | 339 | 135 | 1.2E-4 | ||
| MobiDBLite | 428 | 473 | 46 | - | – | |
| MobiDBLite | 428 | 462 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0298600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…