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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0299500 |
| Transcript ID | LotjaGi1g1v0299500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat 1; TAIR: AT5G24520.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9XGN1|TTG1_ARATH Protein TRANSPARENT TESTA GLABRA 1; TrEMBL-Plants: tr|C0A1G9|C0A1G9_LOTJA WD40 repeats protein LjTTG1; Found in the gene: LotjaGi1g1v0299500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72429694..72430743) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATAATTCCACCCAAGACTCTCACCTCCGATCCGAAAACTCCGTCACCTATGACTCCCCTTACCCTCTCTACGCCAT GGCCTTCTCCCCCAACAACAACAACAACTCCCACTCCGCCGCCACCACCACCCAACGCCTCGCCGTCGGAAGCTTCCTCG AAGAATACACCAACCGCGTCGACATCCTCTCCTTCAACCCCGACACCCCCTCCATAAGACCCCAACCTTCCCTCTCCTTC GACCACCCTTACCCGCCGACCAAGCTCATGTTCCACCCCTCCACCCACTCCCCGCTTCTCAAATCCTCCGCCGTCGACCT CCTCGCCACCTCCGGCGACTACCTCCGCCTCTGGGAGGTCCGGGAGAATTCCGTCGAGGCGCTTTCTCTCTTCAACAACA GCAAAACCAGCGAGTTCTGCGCCCCGCTTACCTCCTTCGATTGGAATGAAATCGAGCCCAAGCGTATCGGAACCTCCAGC ATCGACACCACCTGCACCATCTGGGACATAGAGCGCGGCGTTGTGGAGACGCAGCTCATCGCGCATGACAAGGAGGTCTA CGACATCGCATGGGGTGAGGCTAGGGTTTTCGCTTCCGTTTCCGCTGATGGGTCTGTGAGGATCTTCGATCTGAGGGACA AGGAGCACTCTACCATCATCTATGAGAGCCCTCAACCGGATACCCCTTTGCTCCGTTTGGCTTGGAACAAGCAGGATTTG AGGTACATGGCTACTATCTTGATGGACAGCAATAAGGTTGTGATATTGGATATTAGGTCGCCGACCATGCCGGTGGCGGA GTTGGAGAGGCACCGTTCGTGTGTCAATGCCATTGCTTGGGCTCCTCGGAGCTCGAAGCATATTTGTTCTGCTGGGGATG ATTCTCAGGCTCTTATTTGGGAGTTGCCTACTGTGGCTGGACCTAATGGGATTGACCCTATGTTCATGTATTCTGCTGGT TGTGAGATTAACCAGCTGCAGTGGCCTGCGGCTCAGCCGGATTGGATTGCGGTTGCTTTTGCGAACAAGATGCAGCTTTT GAAGGTTTAA
CDS sequence (LotjaGi1g1v0299500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAATTCCACCCAAGACTCTCACCTCCGATCCGAAAACTCCGTCACCTATGACTCCCCTTACCCTCTCTACGCCAT GGCCTTCTCCCCCAACAACAACAACAACTCCCACTCCGCCGCCACCACCACCCAACGCCTCGCCGTCGGAAGCTTCCTCG AAGAATACACCAACCGCGTCGACATCCTCTCCTTCAACCCCGACACCCCCTCCATAAGACCCCAACCTTCCCTCTCCTTC GACCACCCTTACCCGCCGACCAAGCTCATGTTCCACCCCTCCACCCACTCCCCGCTTCTCAAATCCTCCGCCGTCGACCT CCTCGCCACCTCCGGCGACTACCTCCGCCTCTGGGAGGTCCGGGAGAATTCCGTCGAGGCGCTTTCTCTCTTCAACAACA GCAAAACCAGCGAGTTCTGCGCCCCGCTTACCTCCTTCGATTGGAATGAAATCGAGCCCAAGCGTATCGGAACCTCCAGC ATCGACACCACCTGCACCATCTGGGACATAGAGCGCGGCGTTGTGGAGACGCAGCTCATCGCGCATGACAAGGAGGTCTA CGACATCGCATGGGGTGAGGCTAGGGTTTTCGCTTCCGTTTCCGCTGATGGGTCTGTGAGGATCTTCGATCTGAGGGACA AGGAGCACTCTACCATCATCTATGAGAGCCCTCAACCGGATACCCCTTTGCTCCGTTTGGCTTGGAACAAGCAGGATTTG AGGTACATGGCTACTATCTTGATGGACAGCAATAAGGTTGTGATATTGGATATTAGGTCGCCGACCATGCCGGTGGCGGA GTTGGAGAGGCACCGTTCGTGTGTCAATGCCATTGCTTGGGCTCCTCGGAGCTCGAAGCATATTTGTTCTGCTGGGGATG ATTCTCAGGCTCTTATTTGGGAGTTGCCTACTGTGGCTGGACCTAATGGGATTGACCCTATGTTCATGTATTCTGCTGGT TGTGAGATTAACCAGCTGCAGTGGCCTGCGGCTCAGCCGGATTGGATTGCGGTTGCTTTTGCGAACAAGATGCAGCTTTT GAAGGTTTAA
Protein sequence (LotjaGi1g1v0299500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNSTQDSHLRSENSVTYDSPYPLYAMAFSPNNNNNSHSAATTTQRLAVGSFLEEYTNRVDILSFNPDTPSIRPQPSLSF DHPYPPTKLMFHPSTHSPLLKSSAVDLLATSGDYLRLWEVRENSVEALSLFNNSKTSEFCAPLTSFDWNEIEPKRIGTSS IDTTCTIWDIERGVVETQLIAHDKEVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDL RYMATILMDSNKVVILDIRSPTMPVAELERHRSCVNAIAWAPRSSKHICSAGDDSQALIWELPTVAGPNGIDPMFMYSAG CEINQLQWPAAQPDWIAVAFANKMQLLKV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 349 | 346 | 2.4E-195 | – | |
| PANTHER | 4 | 349 | 346 | 2.4E-195 | – | |
| Gene3D | 8 | 348 | 341 | 1.4E-40 | ||
| SUPERFAMILY | 22 | 304 | 283 | 1.19E-37 | ||
| SMART | 73 | 119 | 47 | 110.0 | ||
| SMART | 130 | 169 | 40 | 4.4 | ||
| ProSiteProfiles | 136 | 310 | 175 | 13.896 | ||
| ProSitePatterns | 156 | 170 | 15 | - | ||
| SMART | 172 | 210 | 39 | 1.6E-4 | ||
| ProSiteProfiles | 179 | 219 | 41 | 9.573 | ||
| Pfam | 179 | 210 | 32 | 0.12 | ||
| SMART | 261 | 301 | 41 | 1.7E-5 | ||
| Pfam | 265 | 300 | 36 | 0.13 | ||
| ProSiteProfiles | 268 | 302 | 35 | 9.974 | ||
| ProSitePatterns | 288 | 302 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0299500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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