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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0300500 |
| Transcript ID | LotjaGi1g1v0300500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nascent polypeptide associated complex alpha subunit, putative; TAIR: AT3G49470.1 nascent polypeptide-associated complex subunit alpha-like protein 2; Swiss-Prot: sp|Q94JX9|NACA2_ARATH Nascent polypeptide-associated complex subunit alpha-like protein 2; TrEMBL-Plants: tr|I3SFN2|I3SFN2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0300500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:73345254..73348419) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAATGGCCCAAGAAATGTGAAAAAACCCTTGATTTGAGCCGGAATAAGAAACACAGTGAGTGTGTGTTATCTCTTC CCATTCCCAAGTTCCTATCTCTATCTACCATTCCATTTCTCACTCACTGATCACCGAGACTGAAACCCCAACCCTCTCAC GTCTCACAAAACATGGCACCAGGTCCCGTTGTTGACGCATCCTCCGAGGCCGAAGCCCTCGAACAAGTTCTCTCCGCCGA AGAAACAACCTTAAAGAAGAAGCCTCAGCCGCAGGTTGTTCCTCAGTTATCAATTTCTAATTCTGAAACATTCGATTTTG TGTTTTTTGTGCATGTTTTCCTTGGATTTGGTGTCTTATTTGAGCGCGTGGTGTTGTTTTTCTTCAGGAAGATGATGCTC CCATTGTTGAGGACGTGAAGGATGATGACAAAGATGAAGCTGATGACGATGAAGATGAGGATGACGATGATGAGGATGAT GACAAGGAAGATGGTGCTCTAGGTCCTCCCTTTTACTATTTTTAATTTTTTATTTTGCTTTACGTACAATCTAATGAAAT GGGTATTTGATATTTGTTTGTGTGATTCATTATCATCCTTTGATTAGTGAGTTTCCTTTTGCTTGTGATTTTACCTGGGG CTTGTGTAGTGTTTTGTATTTACCATGAGATCTAACTTTCATATAGGTGGATTGTGTTTCCTAGCTTGGCTTAATCTTAT ACTGGAGCAGCCATGAGATCTTTTATGTATAGATTTTTTTTTTATTTGCTTCGTATTTGGGCTGTCATTTATAAACTTAT TTTTTCCTTGACAATTAGATTTGTGGTTATTGCTCTTAAATGTTAGAAGTAGAAGCATTATTCTCATGTGGGCTAAAGGT ACCCTCTATGCTTTAATTAACAAAGGTTGTTTGGGAGATACATTGGTTGCTTGTATGAGGTATAATGGTAGGAAATAGAA GAAATCAAGAGCATTGGAAAAAGCATGAAATTTCTGTCACTCAATTGTTGATTGATTGGCATTTATGTCCTTCTGCTTGT CATGAGTGGATTGTCAATTGATTGGCATTCATGAACTTAGTTTTGTCGTCACTCGTTTGCTAAACAAGCTGATATGAGCT GAGTTCAATTACTGCTTATATCTAAATTTATCACAGCATGTGTATGTTTGGTAACATAATCACTCTACCTATATCCCATT ATTTTAACAAATAAGACTTAGGCAGAGGAACTATATTATTTTAATTTTTTATTGGCCCAGGATGAGATATGCCAAAATGG GCACCCATAACAAAGAATGATTTGAACACTAGCAAAAGAATTGTTAAATCAGTTAAACATTTGGCTTTATTGCCTTAATT TTCAACAGAAATCAATTGGTCATGCATAACATTCATGGTAATGTAAGTGTTTAATTCTTCTAAATTCTAAGCTGATTGCT GTTGAGTCACAAAGATTGCCAACCTTCTATTTTATCCCTTCAGCTTTCAGTTTTGGATTCAAATGGATGTGTCTTTTGTT TTGCTTTTTCTCAAGGCAAATGCGGCCTTTGGCAATGCCTCCATTAGCAAGAGGGCTGACCATTTCTGTAGTCTTTTATT GCACTGATTCAGCTCTCTTAATTCGCTTTTATACTACCATTGTAACTTTTGGGTTTCTTTTTTTGGTTGGTTATCAACTT CATATCTTTACCATAACCAGCTGCTTTTCTGTGCTTATGAATCTTATATCGTGGATTTTTCGTGTTTAGGTGGTTAAAAA TCAATGTGCACTACAGTTGTTGCAATATTGGCAAGTACTCCCAAGTTTTAGGATGAAAGGGAACTAGATAAAATAACAAT GTATCTGTACACTTCATAACTTTCCCTCTTGCAGTAGCCACATCTATGCTGTGTTACATTTGGTTGGCATGCTATTTGTT GATCTTGTTCATTAAGATGTTCCATTGGGCTTTTGAAATAAAGGTGGTTCTGAGGGTTCAAAGCAAAGCAGAAGTGAGAA GAAGAGTCGAAAAGCAATGTTGAAGCTTGGACTGAAACCTGTGACTGGCGTCAGTAGGGTCACAATCAAGAGAACAAAAA ATGTTAGTTATCTATATTATCGTGTTTGTTCTCTAAAAAAAACTTTATTATTGTGTGATTTGTGTGGAAGACTGCCAGCA TCTAAACAAAATTATTTTCTGCTGCAGATTCTTTTTTTCATCTCAAAACCTGATGTCTTCAAGAGTCCAAATTCCGAGAC CTACGTCATATTCGGGGAGGCGAAAATAGAGGACCTGAGCTCTCAGCTGCAGACACAAGCTGCTCAGCAGTTCAGGATGC CAGATATGGGATCTGTGATGGCAAAACAAGATCAAGGTACTGCAGCTGATGGAGGGCAGCCTGAGGAAGAAGAGGAGGTT GATGAAACTGGTGTGGAGCCGCATGACATTGATTTGGTCATGACACAAGCAGGAGTGTCCAGGGGCAAGGCCGTGAAGGC TCTCAAGACTCACAATGGGGACATTGTTGGTGCCATCATGGAACTCACTACTTAATTGGGTTATGTGTTCTGTTTGTATC CCTTTTTGCAATAATTTTTGAACTAGTGCAATCCTCAAGTTACTTGTAGCCAAAGACCATACCAGCATATCAACCCTTTA TATGTTTAGGCTTACCACTCCACGTCATAATTTTATTGCTTTGTCTGTTTCTCAAAATTCTGGGGTGACATTATGGGCAA ATTTGTTGGTTTACCTCTTCTCAATATTGTTCGAGAGTTGTGCCAGTTGATTGAGTTTATCTTTGTAATTCCTTATTTCA GTTTTCTTAGTTTTTCAATTCAATTTTTTTCATTTCATTGTGAAATGCTCTCTTTTAATTGCACCTAGCATGGTTGAGTT TTTTTGTCCATACCAGGCTGAGCTTTTACATTAAGTTTCTTGCCTGAGCCATCAATGTCCTTTGGCCCAAGGTAATATTA TTCAGACTGGTAAAAAAGAATTAGAATCCTAAAGAGAAAGTTATACAGTCAAACAGTTCTCTATGCCTAAAATAAAACTG GTATATTGTATAATGAGTATAAATATCATCTGCATAAAGTTCAGAGGGTATGTACACTTCACTGGCATGATGGCCCAGAA TTGTGTATCATTGTGTATGCACTAAAGCAAACAAATTAAATAAATT
CDS sequence (LotjaGi1g1v0300500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACCAGGTCCCGTTGTTGACGCATCCTCCGAGGCCGAAGCCCTCGAACAAGTTCTCTCCGCCGAAGAAACAACCTT AAAGAAGAAGCCTCAGCCGCAGGAAGATGATGCTCCCATTGTTGAGGACGTGAAGGATGATGACAAAGATGAAGCTGATG ACGATGAAGATGAGGATGACGATGATGAGGATGATGACAAGGAAGATGGTGCTCTAGGTGGTTCTGAGGGTTCAAAGCAA AGCAGAAGTGAGAAGAAGAGTCGAAAAGCAATGTTGAAGCTTGGACTGAAACCTGTGACTGGCGTCAGTAGGGTCACAAT CAAGAGAACAAAAAATATTCTTTTTTTCATCTCAAAACCTGATGTCTTCAAGAGTCCAAATTCCGAGACCTACGTCATAT TCGGGGAGGCGAAAATAGAGGACCTGAGCTCTCAGCTGCAGACACAAGCTGCTCAGCAGTTCAGGATGCCAGATATGGGA TCTGTGATGGCAAAACAAGATCAAGGTACTGCAGCTGATGGAGGGCAGCCTGAGGAAGAAGAGGAGGTTGATGAAACTGG TGTGGAGCCGCATGACATTGATTTGGTCATGACACAAGCAGGAGTGTCCAGGGGCAAGGCCGTGAAGGCTCTCAAGACTC ACAATGGGGACATTGTTGGTGCCATCATGGAACTCACTACTTAA
Protein sequence (LotjaGi1g1v0300500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAPGPVVDASSEAEALEQVLSAEETTLKKKPQPQEDDAPIVEDVKDDDKDEADDDEDEDDDDEDDDKEDGALGGSEGSKQ SRSEKKSRKAMLKLGLKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRMPDMG SVMAKQDQGTAADGGQPEEEEEVDETGVEPHDIDLVMTQAGVSRGKAVKALKTHNGDIVGAIMELTT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 227 | 213 | 1.3E-108 | – | |
| PANTHER | 15 | 227 | 213 | 1.3E-108 | ||
| MobiDBLite | 19 | 89 | 71 | - | – | |
| MobiDBLite | 40 | 70 | 31 | - | – | |
| ProSiteProfiles | 81 | 146 | 66 | 17.479 | ||
| SMART | 84 | 140 | 57 | 1.2E-24 | ||
| Pfam | 84 | 139 | 56 | 1.8E-22 | ||
| Gene3D | 90 | 143 | 54 | 5.3E-31 | ||
| MobiDBLite | 163 | 188 | 26 | - | – | |
| MobiDBLite | 174 | 188 | 15 | - | – | |
| Gene3D | 187 | 226 | 40 | 1.9E-13 | – | |
| CDD | 190 | 226 | 37 | 3.1741E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nascent polypeptide-associated complex | A heterodimeric protein complex that can reversibly bind to ribosomes, and is located in direct proximity to newly synthesized polypeptide chains as they emerge from the ribosome. |
Expression pattern of LotjaGi1g1v0300500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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