Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0301200 |
| Transcript ID | LotjaGi1g1v0301200.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding endonuclease/exonuclease/phosphatase family; TAIR: AT5G54130.2 Calcium-binding endonuclease/exonuclease/phosphatase family; Swiss-Prot: sp|O81916|YC22_ARATH Uncharacterized calcium-binding protein At1g02270; TrEMBL-Plants: tr|K7KUX2|K7KUX2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0301200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:73477709..73481614) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAACGGCAAGGTGGGCTAAGAGGATGGGAAGGATTTCAAGGATTGGCAGTTTTGCAATTGCTTCTTCCATTAATGA TAACCAGCAACAACCTTGCATTACCTGCACTACTTTTAATATTCTTGCTCCTATTTACAAGCGAATTGACCATGAGGTTT GTTTTTTTGTTTTAATCATTTTTAACCTTCTATTTTTGCATAGTGAGGTGTGTTTTTCAAAAGGGTAGTCTCAAGTTTTG TGCTTTTTGTGTTTTGTTGATTAAAACAGGACCCTAGTTGCCGCGAGAGCGATTGTAAAGCGTATTGGATGGCCAGGAAT CATAGGATTTTGGATTGGTTGTTGAATGAGAGATCTTCTATTATCTGTCTTCAGGTTTGTGTGTTGGTTTCTTTTCATGG TTATCAGCTTCATGACATATTTTGTCATAACTCTTTGCATTTGTTCCCTCTATTTTGTTTGTGCTTGAAAATTGAAATTG ATTGGAGTGGCATGTGAGATTCTATAATGGGCCAGAGGCTAATATGTGTTGGGTTTGCGCAGGAGTTTTGGGTTGGAAAC GAAGAGCTTGTTAATTTGTATGAGAAGAGGCTTGGCGATGCTGGCTATGTTAGTTTCAAGCTTGGAAGGACCAACAACCG TGGGGATGGTATGCACAATATTCTCTCTCAATTGGAAAATATCCCTTTGGATTTTCATCACTTTAGTATTGCAAATAAAT GTCAATTGGTAATTACCAATTTTTTTCATGGTACTGTGAGGATTTGCAATGTGATGAACTGATTTATTGAAATTGGCAAA CAGGAACACCACATGGCAAGTTTAGGAAATATTTACTGCGGGAAGGGAACAACATTGAGGAAAAATATCTTCTGTTTTAA ATTTTCTTGCGAATAGAACTCTTGTGAACGGAAGTTTCAGTCAGTTAGATGCTAGTCGGACACTTTAGAGGGTTTGGTTT GTGAGAGATTCACTTTAGAGGGTAAATAGTGAAATAGTAATGGTTGAAATTTTAATAAAATACATATTACATAAACATAT ACAGCTGTTAAAATCTACTCATTGGATGTAAGTTGTAGTAACTCTGCACTTGTACTCACTTTTGGCAGGAGAAGCCCTGT TCTACATATGCATAGTTTTGCTCTGAAATTTCTTCTTGAAGATTTATGCACAAAATACAAATTCTTACATGTAGTGTTTC TACAGGTCTTCTGATAGCTGTGCAAAAGGAATACTTCAATATTCTTAATTATAAGGAGCTGCATTTCAATGACTGTGGTG ATCGTGTAGCTCAGCTGTTACATGTTGAACTGGCTTTTCCATTTTCACAGTGGCGAAGCAGTGAAATTAGGCAGGAAATT CTGATTGTTAACACTCACCTGCTATTTCCCCATGATTCTACTCTAGCCCTTGTACGACTGAACCAGGTATCTAAGCATTT AAATGTCACATCCAAACACTTGCCAATTATTAGATTTGGTGTCTCATTAGACTGACACACCTTAAAATTTTATTTTCTTT AGGTCTACAAGATTCTTCAATATGTAGAGTCGTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCATGCTATGCGGG TAAATTCCAAATGTACTTCCACGCACTTTTTTTGTTTTTTGTTTTTATCTAAAACTCTTGAATTGTGTTTTATTTACAAG TTTTTATTTCTCAGTGACTGGAATGGAAGCAAACGTGGACATGTTTACAAGTTCCTGAGGTCTCAGGGTTTTGTATCATC TTATGATACTGCACATCAGTACACTGATGCAGAAGCTGACAAGGTATTTAGTTATTTACCATTGCCTTCAAAAAAATTAT GCTTGACAATATGCCAATCACTCAGATTTATTTAACATCATTTCAATGCAGTGGGTTAGTCACCGCAATCATCGGGGAAA TATATGTGCTGTTGATTTTATTTGGCTTCTGAATCCGGACAAGTATCGAAAACTGCTCAAAGCAAGTTGGAGTGAAGCAG TGTTTGGCATGTTCAAGGTAATCATGTAACATTTGGACCCAGACTCAGTTTATTAAGCATATTAGTTTTACCATCTTTGC AGGGAGTCATGTATACCTTCAAACCAAATATGTTTCATATATATTCAACATTACTTTCCTTATAGCAATAGGGAAATAAC TCTGAAGTTAATAAGGCAAACACTTCAATGTTGGACAAGGATCCTGATTCAAGTTGTCTCCTAAAACTTTGATACACCTG ATTGATGTATTCGATAAACGTATCACTAGAAGATAGTTTCAAGTGCAGTATTTGTATAATCTTGTGGAAGACCGCAATTA GATATAGTTTACGAGTGAGGAATCAGTATTGCTTACACTTATTATGTCAGGGAGGAGATTATTTATGGGTTTTGTTAATA TTTCTTGTTCTCGTATATTGACATTATTACTATTTGTCTAGTGTTTTATTTTAGCCTACCACTAATATGAATTCAGAAAA GGTGAAAGTTTACCAAGTGAAAACCAGCATTATTCTATTCATTTGCGGAGCTGAATTTTCCTTAACAAAATTTTTTTCCA TTTTCAGTATCTATTGCGGAGAGCTTCACTGACAGAGAGTGATGCATTTGCTTTTCTAAAGGGCGATAATGAAGATTGTA TTACTTATGCTGGTTTCTGTGAAGCACTTCGAGAGGTATGGACACTCTAAAAGTTCAGTTAATGCATGTGCTTGTCTGAG AAATCCAAGTGGTTATAAGTTATTTTCATTCTGTGCAGCTCAATTTAACAGGTCATTGCCATGGGTTATGTGAGCAAGAG ATTAAAGACTTGTGGGTCCAAGCAGACATAGATGGAAATGGTGTTCTTGATTACAAAGAATTTCTGGTAAAGTATTTCAC ATGACATGATATCTTATAGAAATATCATACAAGAAAAGACTTTTTCCAGTAAAAAATCATATTTATGCAACCAATGACTA GAGGTTGAGTGTGAGCCTGAAATCTAAGGGTGTGTTTGTGAGTTGATTTTTGGAGGGGAGGGGAGGGAATGGAAGGGGGA GACTTATGAGAAGCCCTCCCCTTGTTTGGGAGATTTTAAAATGGGGGGAAGGGTTTGGGCCTTGGGGCTATTTCTAAAAA CCCTCCAAAACAATCTTGTTGTTCCCCCAAATTGGGGGGTTTTGGGGAATTTGGAACTTCCAAATAAGGGAAGAGCTTAC CCCCTTCCCTTTCTCTTGCTCTCCCCCGCCCCCTCGTAAAAACTCACAAACAAAGGGGTTTATAGTAATGCACTGACAGC ATGTTATATGTAATTTGCCTATATGATAATCTGTATCTTAGTTTCTGTGTACATAAACATACAAATTAAGGAGTTCTATC AGGTCAGGTTCATAGAACATTTTGTCAGTAGTGAGAGATCCAACAAGTACAATTAACCCGTATAGGTATATTAAAGAAGA AAATGTCATTAAGTCCAGCAAATTAGTAAAACTCTTTTGTGTTGAGTGGATGCTGAAGTTCCTTTTTTATTTTTGGTTTG TACATTAGCTTAGTTAGATGCATGTAGGTAACATCACCTAGTGAGATAAGCTTGCCTATTTCTGTTTTATAGTGGGCTAT GAAATTCAAATTTTTTAATTTTCTGCTTTATTCCGAGTTTATTGGCTAAATCAAGGTTTTGATATCATGCCGTTGCAGCA GCAAATCTGGAATTCAGCAGTTTCAGATCAGAGAGATGACAACAAGAACGCGGAACATTATGATGTTCAGGAACAAACAA TTGGTTTCAGTGTAAAAAATGCGGTGTTGTTCCCTCCGGAGGTGGAGAAAGGTAGATGGCCTGAAGACTACTCCCTATCG GATCACGCGCGACTCACTGTAGTGTTCTCACCAATAAGAATGCCATGCTCCCAGTTGATTTGCTAA
CDS sequence (LotjaGi1g1v0301200.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACGGCAAGGTGGGCTAAGAGGATGGGAAGGATTTCAAGGATTGGCAGTTTTGCAATTGCTTCTTCCATTAATGA TAACCAGCAACAACCTTGCATTACCTGCACTACTTTTAATATTCTTGCTCCTATTTACAAGCGAATTGACCATGAGGACC CTAGTTGCCGCGAGAGCGATTGTAAAGCGTATTGGATGGCCAGGAATCATAGGATTTTGGATTGGTTGTTGAATGAGAGA TCTTCTATTATCTGTCTTCAGGAGTTTTGGGTTGGAAACGAAGAGCTTGTTAATTTGTATGAGAAGAGGCTTGGCGATGC TGGCTATGTTAGTTTCAAGCTTGGAAGGACCAACAACCGTGGGGATGGTCTTCTGATAGCTGTGCAAAAGGAATACTTCA ATATTCTTAATTATAAGGAGCTGCATTTCAATGACTGTGGTGATCGTGTAGCTCAGCTGTTACATGTTGAACTGGCTTTT CCATTTTCACAGTGGCGAAGCAGTGAAATTAGGCAGGAAATTCTGATTGTTAACACTCACCTGCTATTTCCCCATGATTC TACTCTAGCCCTTGTACGACTGAACCAGGTCTACAAGATTCTTCAATATGTAGAGTCGTATCAGAATGATTTCCAACTCA AGCCAATGCCAATCATGCTATGCGGTGACTGGAATGGAAGCAAACGTGGACATGTTTACAAGTTCCTGAGGTCTCAGGGT TTTGTATCATCTTATGATACTGCACATCAGTACACTGATGCAGAAGCTGACAAGTGGGTTAGTCACCGCAATCATCGGGG AAATATATGTGCTGTTGATTTTATTTGGCTTCTGAATCCGGACAAGTATCGAAAACTGCTCAAAGCAAGTTGGAGTGAAG CAGTGTTTGGCATGTTCAAGTATCTATTGCGGAGAGCTTCACTGACAGAGAGTGATGCATTTGCTTTTCTAAAGGGCGAT AATGAAGATTGTATTACTTATGCTGGTTTCTGTGAAGCACTTCGAGAGCTCAATTTAACAGGTCATTGCCATGGGTTATG TGAGCAAGAGATTAAAGACTTGTGGGTCCAAGCAGACATAGATGGAAATGGTGTTCTTGATTACAAAGAATTTCTGCAAA TCTGGAATTCAGCAGTTTCAGATCAGAGAGATGACAACAAGAACGCGGAACATTATGATGTTCAGGAACAAACAATTGGT TTCAGTGTAAAAAATGCGGTGTTGTTCCCTCCGGAGGTGGAGAAAGGTAGATGGCCTGAAGACTACTCCCTATCGGATCA CGCGCGACTCACTGTAGTGTTCTCACCAATAAGAATGCCATGCTCCCAGTTGATTTGCTAA
Protein sequence (LotjaGi1g1v0301200.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTARWAKRMGRISRIGSFAIASSINDNQQQPCITCTTFNILAPIYKRIDHEDPSCRESDCKAYWMARNHRILDWLLNER SSIICLQEFWVGNEELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVQKEYFNILNYKELHFNDCGDRVAQLLHVELAF PFSQWRSSEIRQEILIVNTHLLFPHDSTLALVRLNQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQG FVSSYDTAHQYTDAEADKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLLRRASLTESDAFAFLKGD NEDCITYAGFCEALRELNLTGHCHGLCEQEIKDLWVQADIDGNGVLDYKEFLQIWNSAVSDQRDDNKNAEHYDVQEQTIG FSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFSPIRMPCSQLIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 442 | 432 | 8.7E-204 | – | |
| PANTHER | 11 | 442 | 432 | 8.7E-204 | – | |
| Gene3D | 18 | 311 | 294 | 1.3E-36 | ||
| SUPERFAMILY | 27 | 247 | 221 | 2.09E-26 | ||
| Pfam | 38 | 245 | 208 | 1.2E-11 | ||
| SUPERFAMILY | 262 | 381 | 120 | 8.21E-11 | ||
| Gene3D | 312 | 400 | 89 | 2.8E-9 | – | |
| ProSiteProfiles | 346 | 381 | 36 | 11.082 | ||
| ProSitePatterns | 359 | 371 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0301200.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…