Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0303900.1

Overview

Field Value
Gene ID LotjaGi1g1v0303900
Transcript ID LotjaGi1g1v0303900.1
Lotus japonicus genome version Gifu v1.2
Description Alcohol dehydrogenase, putative; TAIR: AT3G56460.1 GroES-like zinc-binding alcohol dehydrogenase family protein; Swiss-Prot: sp|A7RK30|QORL2_NEMVE Quinone oxidoreductase-like protein 2 homolog; TrEMBL-Plants: tr|I3T138|I3T138_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0303900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:74152558..74156836) extracted from Lotus japonicus Gifu genome v1.2.

CTCGGTCTCCAGATAAATAGGATAAGAACTGCATTACACAAATTCAGACAAGTTGAAGGTGAAAAACAAACAAACAAACC TCGTAGAGTATCGAAATGGAAGCATTGGTGTGCAAGAAACTGGGTGATCCAACATTGGGTCTAGAAGACAACAACACCCC AATAATCCTCTCAAAGAATCACCCTATTCCTCAACTCGATTCTCCCACTTCTGTCAGAGTGAAAATCAAAGCCACAAGCT TGAATTTCGCAAATTACTTGCAGATTCTGGGCAAGTACCAGGAGAAACCCACTTTGCCATTCATCCCCGGATCCGATTAT TCTGGCATCGTTGATGCCGTTGGTTCCAAAGTTGAAAGCTTTCGTGTTGGGGACCCTGTTTGTTCCTTCATCGCTCTTGG CTCTTTCGCTGAGTATCTTGTTGTTGACGAGACCCAGTTGTGAGTTTTGCTTTAATTTTGTGTTTTTGATGTTGTTGCTT GTCAGGTTTGTGTAAAAGTTGTTGACTTTGAAGGTTTCGCGTGCCGGATGGTTGTGATCTTGTTTCTGCTGGAGCACTTG CTGTGGCGTTTGGTACTTCTCATGTAGCACTTGTCCATAGAGCTCAGTTGACATCTGGTCAGGTATCTATAACTTACTTT ACTTGTTGTTGGGTTTCAGTATCAGGGTATGTATATATGATAATGGTGATGGTAATGATAATGATGATGCATATAGTGCT GTCTCTTTGTGTGGTTAATAGCATGCTTGGAAATTCTCATAGAATTGATTCTACCACCATAATCAATTCTTTTGTAGAAT CTAAAAGAAAGTAAGTTGATCCAAACATGTTATAAGGGTGTGTTTGAGTAAACAACTAAATCAAGGGCTTATGGCAATAA GCGCTTATTCATAAGCTACTTTTAGAAATTTATTGAAATAAGCTGAAAATATGTTATGGATAAGCATAAGGTCCTATACA TGAGCTAGTATGAACAACTTATGATTATGAATATAAGCTCAAAACAGATTATAGGTAGGCCATGATCTATTTACATAAGC TCTCCCAAACACATGCATAAGCGCTTATGCTATACGATAAGCTCTTTGAAGCGGGCCTAAGTGGGTTATGGAATTGTAGG TATTGCTGGTGTTGGGTGCAGCAGGAGGTGTGGGCCTTGCAGCTGTGCAAATTGGAAAAGCATGTGGTGCCATTGTCATT GCTGTTGCTAGGTAGTGAGTTTTTTTTTTCCTCTTTTAATGTATTGGTTGTGTATAACATATTGGCATGATAATCCTTGA GTGGATTTCGGCATTTTAGTAGTTATTATCAACTTATCATATTTACTCAGTATCCCTTGGAGTTGAGTGTTTCTAACTTT GCATAATCTGCTGATAGGGGAGCTGAAAAGGTGCAGCTATTGAAATCGCATGGTGTTGATCATGTGGTGGACCTGACTAA TGAAAATGTTACAGAGAGTGTCAAAGAGTTCCTGAAGGCCAGAAAGCTTAAGGGGATTGATGTCCTGTATGATCCGGTAG GAGGCAAGCTGACTAAAGAGTGTTTGCGGCTTCTCAAATGGGGAGCTAACATTTTGATAATCGGGTTTGCAAGTGGAGAA ATTCCGGTCATCCCTGCTAATATAGCTCTTGTCAAGGTACATCAGGAATGAAGTTTCAGAACCTGAATTTACCTTGTCTT GCTTGATCACTGAGTTATACCATGCTTGTTGTTGCTTGATATGATCATGCTTTATTGACATACAATTTGAATTTTGAATC ACATAATGTGAAGAATATAGTGAAGTTAATTGGGTAGGGTTATGGACGGAAAACTCCTGAACATTGATTTAATCTCTTCT TTCTTCTCTTCGTCGCCACTTGATATAAGTATATATGATTGCAGCTTCTATTGTTTAGGAAATCACCAGATATCCCAAAT TCCCAAGTTGGCGTCCCAAAATAACGTCCTCAAATACCCGGGTCATTCCGTAAATGCTAGCTGACCCTAGACTCATATTT CTGCTTCCTTCTATTCATTGTTAAATTGCAGACTAAAGCTTTCAATTTGCCTGCAAATACTTGCACCTATAACCTGAACA CCTTTTGTCATATAGACACAAGTTCGCCTGCGTATTTCCAATGACTGTAGATAGTTGTATATATCAATTATTTACATAAT ATATTAAAGAGAAAGCTTATCCTTTGTTGCTATGTCGAAGTAGTTTAATTATATAAGCATTAAGGAGTGGTTTAAGTTTA AAAGCAGCTACTTCACAATAAACAAACTACAAAGAATAAACAACTGTCTGTGTTATTGCAACAAGCTTAACTGTTATTTG ATTTTCTTTTGCTTTAGAAAATGAAGCTGAAAATGTCATCTTAAATGCAATGGTTACTTTATGCTATGTATCTAAAGCAG AAAAAAACCAGAAGCCATACAAAAAGCTAGTATGATGCAGTATCTTTCTATCTTAACATTAAACAACTGATATAAGGTCC TCTTCCCAGTGTATGGGTTGTGATATTTTCCTGCACACTGTAACTTTAAGATATCAGACTACATTAGGTGAAGATAGGGA GAAGACCAAGACACGTAGGGCATATCACATACTGAGTTGGATAGGGTTCTCTAAAATATTCTTTATTCAGTATCTGTTTG ATAACTATGCACATAATGTAGGGATCAATTTGAGGCTAAATAATCAGGAGCTGATAAACAGTATTAAGGCCCAAATAGTT TAAGAAAATGTCATAGCCCTATACGTATGACTAAATACTAGACTCTTCAAGCTTAATGTAAACTACTGATGCATTTTGAG ATTAAATCACTAAAACACTCCTATGGTTGAATATTACAATTGTCCCTCATATCAACATTAAACAAATTAGTGAGATGTTT GGATCCTTAAACTTTTGACTTCTTGATTTTTGCCACTTTCATTCCAAAAAATTTGGTTATTATTTATTTTCTTTAAAATC ATTGTGCCAGAATTGGACAGTTCATGGCCTTTATTGGGGTAGCTATAAAATACACCGCCCACGTGTTCTTGAAGATTCTC TCAAGGAGCTACTGTCTTGGTTGGCAAGAGGCATGATCTCCGTCCACATTTCTCATTCTTACCCCCTGTCAGAGGTCAGA AATTTCTTTGTCATAGTTTTCCATTAATTTGTCTCTCTCTCTTTTCTCTAATTCAATGCACATTCTAAGACTTGCCATAT TTGCTTAAAGATATTTCACTGCTGCTATAACTCTTCAAAGGGAGTTGTTGCTTTGAATATTTCACTATATAATTGGTTTT GATCATGTGAAACATATTACACCTTTATTAGACTATGGTTAATCATATATTGGTTGAATATATCATTTATATTTATTTGT TTATGAGAAGTTGATATTTATATTTAGAAATTTATACCACTTGCCTCATCTTTTGTGCATCCCTGAGCTCCTTTGGTGTT CAATGGGGCTAGTAGTATACCGTGTAAACAATTTCTTATCCTTGCAGGCCAACCTTGCCTTTGGTGCCATCAAAGATAGG AAAGTTATTGGGAAGGTGATGATTGTGTTTGATGAGAAATCTACTAGATCTAAGCTGTGACCCTGCTGAAATTATGCTAT ACAGTTGAAGATTTTGTCAAAGAACACGAGCATTGAGGTTTATATTGCTGACCAAGGAGATGCTAGCATGGGAAGAATCA AAATAAATGGAGCAATAATTGCCAAAGTTATTTACAATTACCCCATTGTCTTTCAGCCCCGCCCCCATCTAGAAGCTGTA AGCATGTTTGGAAAATTTTCTACAATTGATTATAAACCCAAAATCAATTATGAAGTTAAGTTTTTGGGAGTAGTTTCTGG GTGTTATAATTGATTCAAAGAAAAAATAAGCTGATCTAAACCTGCTAAGTTGCTAACCCTTATGTAATATTTAGCCTCTA AAATTTATTTTTATTAAGTTATAGTTATAGTACAGCTGGCATATATATTATACTGTGTTTCAAAGATGTTTGCTCTTCTG CTAAAGGGTGATTTTTTTTCAACGTCTGTTATCACTTATCACTTGTTTGCACTTAAAAACCTTGATTCTATCTTCAATAT TAGGGACCTTGGTAACGTACTTTCTTGTATTCAAAGTTTTTAGAGTCACAAAGACATTCACATTTATAAACGCTAAAGAC ATTATTTGACTCGGGAGAAAATTTAGGTATGGTTTTTCTTATTTCATCACCCATGGCCATGAATGTAGCAAATTATCAGT CATGGAGCAAAGTGATGAAGTGGGCTCTTTTGTCCGAGA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0303900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGCATTGGTGTGCAAGAAACTGGGTGATCCAACATTGGGTCTAGAAGACAACAACACCCCAATAATCCTCTCAAA GAATCACCCTATTCCTCAACTCGATTCTCCCACTTCTGTCAGAGTGAAAATCAAAGCCACAAGCTTGAATTTCGCAAATT ACTTGCAGATTCTGGGCAAGTACCAGGAGAAACCCACTTTGCCATTCATCCCCGGATCCGATTATTCTGGCATCGTTGAT GCCGTTGGTTCCAAAGTTGAAAGCTTTCGTGTTGGGGACCCTGTTTGTTCCTTCATCGCTCTTGGCTCTTTCGCTGAGTA TCTTGTTGTTGACGAGACCCAGTTGTTTCGCGTGCCGGATGGTTGTGATCTTGTTTCTGCTGGAGCACTTGCTGTGGCGT TTGGTACTTCTCATGTAGCACTTGTCCATAGAGCTCAGTTGACATCTGGTCAGGTATTGCTGGTGTTGGGTGCAGCAGGA GGTGTGGGCCTTGCAGCTGTGCAAATTGGAAAAGCATGTGGTGCCATTGTCATTGCTGTTGCTAGGGGAGCTGAAAAGGT GCAGCTATTGAAATCGCATGGTGTTGATCATGTGGTGGACCTGACTAATGAAAATGTTACAGAGAGTGTCAAAGAGTTCC TGAAGGCCAGAAAGCTTAAGGGGATTGATGTCCTGTATGATCCGGTAGGAGGCAAGCTGACTAAAGAGTGTTTGCGGCTT CTCAAATGGGGAGCTAACATTTTGATAATCGGGTTTGCAAGTGGAGAAATTCCGGTCATCCCTGCTAATATAGCTCTTGT CAAGAATTGGACAGTTCATGGCCTTTATTGGGGTAGCTATAAAATACACCGCCCACGTGTTCTTGAAGATTCTCTCAAGG AGCTACTGTCTTGGTTGGCAAGAGGCATGATCTCCGTCCACATTTCTCATTCTTACCCCCTGTCAGAGGCCAACCTTGCC TTTGGTGCCATCAAAGATAGGAAAGTTATTGGGAAGGTGATGATTGTGTTTGATGAGAAATCTACTAGATCTAAGCTGTG A
Download CDS Sequence

Protein sequence (LotjaGi1g1v0303900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEALVCKKLGDPTLGLEDNNTPIILSKNHPIPQLDSPTSVRVKIKATSLNFANYLQILGKYQEKPTLPFIPGSDYSGIVD AVGSKVESFRVGDPVCSFIALGSFAEYLVVDETQLFRVPDGCDLVSAGALAVAFGTSHVALVHRAQLTSGQVLLVLGAAG GVGLAAVQIGKACGAIVIAVARGAEKVQLLKSHGVDHVVDLTNENVTESVKEFLKARKLKGIDVLYDPVGGKLTKECLRL LKWGANILIIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHRPRVLEDSLKELLSWLARGMISVHISHSYPLSEANLA FGAIKDRKVIGKVMIVFDEKSTRSKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43677:SF4
1 335 335 1.5E-142 –
CDD
cd08241
1 335 335 6.90177E-141 –
PANTHER
PTHR43677
1 335 335 1.5E-142 –
SMART
SM00829
15 335 321 8.6E-21
IPR020843
SUPERFAMILY
SSF50129
27 151 125 3.04E-31
IPR011032
Gene3D
G3DSA:3.90.180.10
36 331 296 1.3E-88 –
Pfam
PF08240
38 97 60 7.8E-8
IPR013154
SUPERFAMILY
SSF51735
122 287 166 9.87E-42
IPR036291
Gene3D
G3DSA:3.40.50.720
133 280 148 1.3E-88 –
ProSitePatterns
PS01162
150 171 22 -
IPR002364
Pfam
PF00107
161 299 139 3.2E-21
IPR013149

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0303900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…