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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0305200 |
| Transcript ID | LotjaGi1g1v0305200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Eukaryotic translation initiation factor 1A; TAIR: AT2G40780.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q58CY2|EIF1A_BOVIN Probable RNA-binding protein EIF1AD; TrEMBL-Plants: tr|A0A0L9UEA0|A0A0L9UEA0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0305200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74431523..74436911) extracted from Lotus japonicus Gifu genome v1.2.
GATAAATTGTACCCGTCAGGAATCGATCCCTGGACCTCTCCATACCCACCCATATGTCCCCCAACTCATAGATGTGATTA TATATTTCTCATTTTTTTAAAAAAAATTATATATTTCTGATTTTCCAATTTTAATGAGTTTGTTGAAACGCTCAAAATTT TCTTTATTTTAATTTTAATTTGACCCTAACCCTACCCTGAAACGACACCGTTCAGCTAGTGAGGCTTTGTTTTCATACCC TTTCTCTTGAGTGAGTAGCGATACTCAGAAGACCCTGTTGCTCGTGAACCACCATCGCCCCTTACATAGCTCCTCTGCCA CCGCGAGCTGCTTCGCCGCTGCAAGGCTTCGTCTCTTCCGTCGCTCTCTCTCTCTCTATTTCCGCCGCCGGAAGCTGGAA CGAGGTTTCGCGAGAGCTTCTCCTTCTCGCACCCTTGCTGTGTCACAGTGAACCTTTAACTGAACTGAACCTTGAATTGC TGAACTCTGTTTTTTCTGCTATTATTCATATTTCATATCAGAATGTGTGAAACTGGTTCATCAAAATCACAGGTGTTGTT GCCTTTAAATCTAGGAAGAATGCCACTGGTTTGGTTAGTGCTCCAGGAACTTATGATTTGGTTATTATGTATGGTTTAGG AGATGTACTAAGTAAAGTTGCACTCTATTATTGTTGTTTGTTGAAGTTTGCTTTAGTATGAAGTTGGTATGTTGAATTTG TTTGGTTAATGTATCTTTAGGTACTAGTCTACTATCTTTGTATTCCATAACAGGTTTTCATAGGTATTTTTTTTCATTTT TGGTAAATTCGGTACGGACTCTAAACTAGTTTACGCATAATTGTGAGTTTGACAACCTTGAGTCTAGACATTTCATGTTT AGAATAATTAGTTAATTACTTTTACCTTTATTTTAGAGATAACCAAAGAGATCAGAATGCTAAACTCAGGGGCGGACCCA CGTAGGGCCCAGGGTTCAGTTGAACCCCCTGAAAAAAAAATTTTTTAACCTACCCCTATAATATATTTTTTTTGAACCCC CTGAAAATTTAATATTGCACCCTAGACCCCAACTCCTCTCTCTCACACTATAGTCACTACTAGTCAGATCTCTCTCCTCT CACAGTCACCACGCACTCACTCTGCACTCACGCTCTCATTCTCTGATTTCCCAAGCTGGCCAAGCACCACCACCGGCCAC CACCACGCCGGCCGCCGCCGCCGCACAACCACGTGCCACTCTCCAGCCGTGCGCCCCTGCCTTTGGCTGTGCCTCTGCGG TTCTAATTTCTACAGGTATGGGCATGGCTGATTTTTTCCTAACCCTAATTTCTGTTTTTCCTCTAATTTCTAAAGTTATA ATCTTCTAATTCTTCTCACCTGTTCAATTTGTTTATCCTAGTTTCTTGTTTTCAAGATTTTCCCCTTCAATTCCAAGTTC AAATTTATATTTTCTTTTTTTGAATCAACAGCTTGTTTCATTCTTTTCCATTGACGTTGAATGTAACTTATCCCAAACAC AAACTACATTCATCCTCAGCAATGATATAATGACCAAATAGCATCAATTGGCAGGAAAAGAATGACCTAAAATTACTGGA ATAGTTATAGTGTTGCCTATATTGAAAAGAATTGATTTGACCATTATTTGTTTTTTATGTTCTTTTACTTTATGCACATG AGAAATTGAGTTAGAACTGAAAATACATTGACTATTTGATTGTGTTGAGCTGCAAGCATTATGGTTTTGTTGATTTATAA ATAATGGCATGGTGAGCACCAACATGTGATGGATCGCTTGCTATATCTTACAGGGTGTTTTTTCTTTTGTAACCTATGGT GTTACTGTATCATCTTTTGCTTTCTTGGGGCTGGGTAGTAAGGTAGTTATTAATGTTGTTTGGATAACTTAACTATGAGG TATGTTGCTGTCCTTAGTTCTTAGTGATTACTTGGGTCTGATTTGTGTACAAGGTAATTGATTTTCTCAAACGTTGTATT GCTGTTAGCACTCCTTGTGCTTGATTTTAGTGAATGCTTTGCTTATAAAAAATAAATAAATAATGGCATGGTAACTTGCC ATTCCAATTGGCAGCTCAATTGTTTGTATATGCAAGCTGCTGCAAATTACCTTGTTCTGATATGAATCAAAGTGTTTAAT TAAATGCTTCATTATATTATTAATCCTCTTTCTTTTGTTAAAATAGAGTAGTGCTGCCATGTTTTTACTGATTATGGTAT GTTTTTAATTTTAGAAAGGTCATGGACAAATTTGAACCCCCTGACCCCGGGGTCCTGGATCCGCCACTGGCTAAACTCAC TTTGGAGACAACTTTGATATATTCACAGCCACTTTACTTCCATCCCATCCATTATTTTTCTTCTTCCTATCTTTCTCTTC TTTTCCTATCACTTTGATTATATCTCTCACTTCTCTTGCTTTTATTCCTCTCACTCTGGTGAAGGTGGAAATGGGGGAGA TTACGAAACATTAGTGCTTTGAAGGCTTTTACTTAGGATGAAAAACTCACTGTGAAGACTTAATGACTTCATAAAATCAT CCACGATTAGACCCTTGATGTTTCCTGGTGTAGGAAAGACTTGAATAGATTAACTTAGCTCTTAATTCTTCTTGAGGTCC TCATTTATATTTGGATTTTACTTTAGCAAAGATATGAGTTTAGAGGTTGATTAGTTACCATCCCATTTGCTTTTACTTGA GTCTACTACTACGCTATTATTGACGTGGTGAGAATTTGATTGTAAATTATTCTTTTCTTGTATATCCCTCTGACACCCCC ATTTAAACTCTTGTACCTGACCACAACAGTTGCCTTAAGTGTTAAGATTCTGATAGTGAATTGGCAATTGTATGAGGCTA GCTCTTTTACATGCTAGATTATGCTTTAGGTTTCTTATCCGTTTTAGTGGTTGAAATGATGCATTGACTGCCATTTGAAA CCTCAGCTTGTTAGAATTAAGTTACATTCACGCATCACCACAAAACCCTAAGCCTAAGGCAATGGATGTGTGTGTTCTTT AACTTATATACACTTGTCCACTTGCTAATCTAGATAATGTGAGATTTCTTTGAGTCACACTTGTTACTGCACTAATACAG CTAACAGCTCATTGTCATTTTTGAACATTTATGATTGACTTATATATAATTATATGTAGTACTAAGGCTGCAAATGCTTA CAAAATTTATAACAATTTATATAGAAATATTTTCAGGTGCATTTTTAAAAAAAAATGGGTTACTCTATTTAGCTTCCAAT TGTGATTTGCAGGAGAGTTGTGAGAAACCTTGGCAACAAGAAAATTGAGGTTTTTGGTGGCCATGAAAGGAGGAAGGAAG AATTTGAAAAGGGCAACAGAGGAAAAACATGTAACCCTTCAAGATGGCCAAAGCATCACGCAAGTGGTGTCTCTTCGAGG CTCCAATCTCATTGAGGTACTGGTTTACAAGTTTTAAATCTTCCAAATTTCCCCTTTTCTGTATTTATGCTAAAAAACCT ACAAAATAACTGAGGCGAAAGTTACAAACTGTTTAAAAGAACAAATTAATGAATATTGTATGAAAGTTTGCATCTGTGGA AAGAACAGGCATATTTATTGAATAAGTAAGAAGAAAAGAAAAAACAACCTAGATGATGGTCGGAAGTTCTACCCTAGTAG CAATCTCAAACTTTGGTACTTCCTTGACTTCATGAGATTCTTAGGTGAACTATTTCTAATGGAAATTTGGGTTTGTCAGT GTGTTTACCAGCTCTGCAATTAAGAAAATAAATCCCAAATTAGTGATTGTTTCAAAAGAAGGAAAGAAAAAAAAAAAAAG GGAAAAACATAGCAAGAAGACATGTGAATCCTGTTAATATTCAAGATATATCACATAAAAAGCCCATTCCTTTCGCCAAC TGAGAGTGTGCCCTGCAGATGGATTTGCATGACTGTTTATTTTAGTTTCTAGGTTTCTTTATGATAATGTTGTTCAGATA AACGCCACATCATTGTTTACTCGTGCATATAGTTCTAATTTATCTTTTGATTTGTCTCAAGGTCATGGATGCATGTGGTG AGAAATCACTAGCTCTATTTCCTGCTAAGTTTCAGAAAAGCATGTGGATAAAACGAGGTTTGTCCTATTTATAATTGAAT ACTTACTGTAGAAATTTAAAAGCTACTCTATATGTTATCTACATTATTTTATAACAAACAATTAAATGCTTTAGTGACAA TTTTATTTCTCTATCTTGGTGACCCAATGATTGTTTGTCTGTTATCATTGTTGATTTTCTCAAGCTCTGGACTTTAGTGA AAGCATTACTTGCCGTATCTCAATTTTGGAAAGGGCAGTGCCTCTATTTTTCAAATGTTCCTAACTAGCTGTTTTTGCTC AAGCCTTAACTGTTTCATTCTTAAAAAAGTAAATTCTTCTAAGCTGACCATATAGGTCATAGAACTATTTAACAGCCATG TCAAGTCCACTCTACCACCCCATTTTTGTCGAGCAGTCCGTTACCTGAACATACACATGGTAAACACTGCTTGAAGCATA GATTGCGGGCTATTTGCATAATCTGAAAAATTGAACTGTGTATTGGTTTTGAAAACCATATTTATCTTTCTTGGTTTGCC TCCACTTCATTGATCAAACCAACCTTGATGCTTTCTCAATGTTCAGGGAGCTTCGTGGTAGTTGATGACGCTGGAAAGGA AAAGGCTCTTGAATCAGGTAGCAAGGTTGCATGTCTTGTTTCTCAAGTTCTTTTCTATGAACAAGTTCGAGCACTACAGA AATCTCCAGAATGGTGTGCTTTTGTTTCCAGCGTTGATTTATATAGTTTTACTTGCACTGGGCTCCCTTGATAAATAATC ATATAGTCTATATTGAACTTGTTTTCTTGGCAGATTACTCTCTATGTTAAACTTGTATTTTACATGGTAGCATCTAATGT CATCTTATCAATATACTCATTTTTCAATCATTCCTTCATGTAGGCCTGAAATTTTTAAAACTGAGATGGTAGATGGTTTA TACGAAACAACCACCTCCCAACAAGTGAATGAGACGGACGAGAGTGATGATGATGGACTACCTCCATTGGAAGCCAATAC AAACAGGATTAGGCCTCCTGAGTTCGATGAAGATACAGAATCGAATTCAGATACAGATGATTGAATCTCATAATTAGGTT TTCATACTTGCATATTCAATCATCAATTCATGTAAAAGAATGTTACTGTTTAGATGTTTCAACTTGTAACTGAGTTTGCA TTGACATGCCAAACTATAAAACACGGACAGACCGTAAATCATTTGTTTGATTAATTGCCTTTTGAACTGCTTATTTTTCC TCATCTTTTTGTGTGAAATTAATGGTAAG
CDS sequence (LotjaGi1g1v0305200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGAGGAAGGAAGAATTTGAAAAGGGCAACAGAGGAAAAACATGTAACCCTTCAAGATGGCCAAAGCATCACGCA AGTGGTGTCTCTTCGAGGCTCCAATCTCATTGAGGTCATGGATGCATGTGGTGAGAAATCACTAGCTCTATTTCCTGCTA AGTTTCAGAAAAGCATGTGGATAAAACGAGGGAGCTTCGTGGTAGTTGATGACGCTGGAAAGGAAAAGGCTCTTGAATCA GGTAGCAAGGTTGCATGTCTTGTTTCTCAAGTTCTTTTCTATGAACAAGTTCGAGCACTACAGAAATCTCCAGAATGGCC TGAAATTTTTAAAACTGAGATGGTAGATGGTTTATACGAAACAACCACCTCCCAACAAGTGAATGAGACGGACGAGAGTG ATGATGATGGACTACCTCCATTGGAAGCCAATACAAACAGGATTAGGCCTCCTGAGTTCGATGAAGATACAGAATCGAAT TCAGATACAGATGATTGA
Protein sequence (LotjaGi1g1v0305200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGGRKNLKRATEEKHVTLQDGQSITQVVSLRGSNLIEVMDACGEKSLALFPAKFQKSMWIKRGSFVVVDDAGKEKALES GSKVACLVSQVLFYEQVRALQKSPEWPEIFKTEMVDGLYETTTSQQVNETDESDDDGLPPLEANTNRIRPPEFDEDTESN SDTDD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 138 | 138 | 6.2E-28 | – | |
| PANTHER | 1 | 165 | 165 | 1.3E-69 | ||
| SUPERFAMILY | 3 | 135 | 133 | 8.57E-21 | ||
| ProSiteProfiles | 8 | 70 | 63 | 8.985 | ||
| SMART | 18 | 107 | 90 | 1.5E-26 | ||
| Pfam | 22 | 71 | 50 | 1.2E-9 | ||
| MobiDBLite | 121 | 165 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Translation initiation factor activity | Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide. | ||
| Biological process | Translational initiation | The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA. |
Expression pattern of LotjaGi1g1v0305200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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