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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0305700 |
| Transcript ID | LotjaGi1g1v0305700.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein; TAIR: AT4G35670.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|G7JXT8|G7JXT8_MEDTR Polygalacturonase/glycoside hydrolase family protein; Found in the gene: LotjaGi1g1v0305700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74474545..74480351) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAGCTTGGAGCCATTCCATAAGACAGACAAGGATGCTGACTGGACGCCCCACATGATTAGATCCACAATGGGTGGTG GAAAACCAAAGTCATGTAAAGTTGCTCGGAGGAAATCCCAACTCACACGATCATATGCTTTCTCTAAGTCCACTTTTAAA GCCACCAATCCACCCTTCCTCTTGTAGGAATGAATTGTATGCATTACTTCTTGAGCTAGAATGATGTTATCCTTGGTGCC CCGACCTGGAATGAAGCTCCCCTGAAGAGGGCCCACGAGATCATGAAGGAGGGGTCTAAACTTGTTGACTAACACCTTGG TGATGACCTTGTACGCGACGTTACACAAGCTGATCGGACGAAGATCTTTGAACCGGAGGGGATTCTCTATCTTGGGAATA GGTACAATAAGAGTTTCAAGGAGAGAGGCATCTCCTTTCCCTTGTCGGAAAGCATCAGCCACCAAACTATGAAGGTCTTG GCCCACAATGCTCCAATATTGTTTGTAGAAAAAGGCCTGAAACCCATCCGCGCCTGGAGCTTTGAAGGAATTCATACACA TGATGGCTTGGCGAACCTCCTCCAAGGACACCGGACGGATGAGATCCTCTCTGTCATTCACAGAGATGGAGGGCGGTCTA ATATCCATGATGTGATTCCTGCAAACCTGTGTATCAACAGAAAAAAGGTTAGTGAAAAAAGCTTGGGCTCCCTCCTTCAA AGTCTCTGGATCAGTACACCACACGTCCCCAACAAACATGCCATGGATCTTGTTCCTCTTCCGTCGTATCACTGTTTGAG TATGGAAAAATTTTGTATTGCGATCCCCAAACTTCACCCACCGTTCCCTAGACTTCTGGAACCAAGTCAACTCCTCCTGA GTTAGGATCTGCTCAAATTCCTCTTTCAACGCTTTTTCTAGTCGCAACATAGACTCTGTCTCCCTCATCTCCAATTCTCG TTGCACCCCTTGAAGTCTCCTCTCAACAAGTTTCTTTCTTCGCGTGATATTACCAAAGACATTTCTGTTGAAGGATATCG AAGCTGATCGAATGTTGTTTAGCTTTCCCACCAAAGAGGGCGGTGGCTCCTTCCAGGTATCACGAACCACAGATTCATAG GAGGGATGAGTTGCCCAAGCTGCATGAAAGCGGAACGGACGTGTTGTAGGATCCTCCACTGACAAAGTGCACCGCACTAG GACGGGACAATGGTCTGAGTAGACCCGAGCAAGATTCTCAACGTAAGCTTCTGGGAATCGGTGCCGCCAAGAGATATCCC CCATAGCCCTATCCAGGCGCTTTGCGATTGTTCGTTGGCCATTCCTCTTCCTTTCCCAAGTGTATGTGTTGCCCGTTGCA CCCAAGTCGATGAATTCACACTCCTCTATCATCGATAACATGCGGAGAGCTCGAACCTGGCAGAAATCTCCACCTGATAC CTCAGAGGGATAACAAATCTCATTGAAATCACCGGTAGCAAGCCATGGTCCCAAGAACTGGCTACGCAGGTTTACCAAGT GTGCCCAGAGGTCCTCTCTCAAGACAGGGTTAGGGCTAGCGTATATGGCTGACAGAATCCACGAGTTAGTGTTCAAGTTG ATGGACACGGATACCACCTGCGAGTGTACATCGATCACCTGAACGGTGAAGTTTCTATCCACCGGAGCAAGCACCCAAAT ACCACCACTGTGCCCTACCGCTTCGGAGACACCACAAAGTTCGTACCCTGCATGGCGCCAAAATGTCGCAACTGACTCAA ACTGACAATGAGTCTCAAAAATAGCAAAGAGAGACGGGTGGAAAGAACGAATTAAATCCCGAACCCTCCTTTGACCACGA GCTCCTGCTCCTCCCCGAATGTTCCAAGCTAGACTCAACTTTATATAATAACAGAGTGCATTATAGTTTTGTATTTTTAA TTTTTTATTAATTAATGAAAAGTATAAGTAAGATAGTAAATCATACTATTGTTTTTCAAAATGAACTGGGCTCGGATGAA ATTGAATGTCATTTTCAATTTGTCCCTCAGGAGTCAATTATGGTGCTTATTTTTTGGCTCACAAGTCAAATTCATCGTAA TTTTCTGTAATTTCTCAAGATTTTATAATTAAGGCTTACGACCTCTAATATAGTAAGTTTCTATTTCGTAGATTGTTCTT TGGGTCCAACCCTTGCAACTTACCAAATAAAAAAGTACTAGAAATAAAACTTTTTCTTTTTAAAATAACTCTTTAATCCA TCTGAATTATTCTTTTCTCTTGAAAAATATGAACACAATATTTGTGTAAATTCAGAAGATGTTTTGAAATAAAAATTGTA TATCAAAATTATAATTTTGAACACTTACAAATTGAATATTTAATCTCTTTATAAATTTAATCAAATGTTTTCTTCATAAA ACATATATAATGTTTTCTTTTATTTAGTTTCGCAATTGCATTTTTGAAAAACTAACATGCTTTAATGATACTTTATTAGT AATTTTTTTTGAAAGATACTTTATTTGTAATTATACTGGTCTAAATACTAGTATGGATAGCCTAAATGGTACTTGATAAA TTAAAATTTCCCAAGTCCTGGGTTCAAATCTACTGGTACCTAGATACCAAAAAAATACTGGTCTAAATGAGTTTTACTAG AATTGTAATTGACCTTTTCATTTTCTTTGACGGAATAGGAGAATTTATGCATGAAATAACTAAATCATAGGCCCTAAATC AGCAAAATGTAGACAATGAAATTATTTTTCACAATGCAATTGGACTTCGCAAGACAAAGATTTGAATGCCATTATTGCTG ATTACAATTTTCCTGCAAGGAATGGTGTTCATCCAGTATATATAATAAGTTACCATTTCACCACTTTTCACATCAAAACT TTATTCGAGCTTCTGAATCACCTCATAGTTTTTTCCCCCACCAATATGGAAGGCCTATTTTCTGTGATTTTTATGTTGTT TGTTGCTATACCTAGCTTGTATGCTAGAGTAACACCCAATGCAGGATCTAGCAACTTCAATATTGTTAACTATGGTGCAA AAGGGGATGGCCAAACTGATGATTCACAAGTATATAAGTTTTTAGTTTTTTTTTATATTTTCATATTATTTGATATAATT AAGTTTTAAATATTTATTGTTAGGTTTTCAAATTGAATCTGACACCATTCTAATTGAACTTTCCAAGGCTTTTGTGAAAG CATGGAATGATTTGTGTGCTGCAACTCAAGGTGCCCCAACACTTCTCATACCCAAAGGGAAATCATTCATGTTGCAACCT GTGTCATTTAAAGGTCCTTGCAAAACTAACAATGTTAACATTGAGGTAAACGAATATGAACCATGTTTTTACTAGCTACT AACATTTAGTAATTTTCTTTTTTGTAGCTACTTACATTATATACATTTTTTTGCTTGACAGCTTCAGGGCACTCTTGTTG CCCCTAAAAGTGTTGTTGCTTGGAAATGGGCAAATAATAATAAGGGAGCATGGATCGATTTCTCAGGCATAAATGGCCTT GTTATTAGGGGAGGAGGAACATTCGATGGGCAAGGTGCTACATGGTGGGCCAAGTACTCTGATGATTCTGACAGGCCAAG TGTAAGTACTTGAAATACATGATCCAGAATTTATTATATTTTAAATAAGTGAACATGTCAAATTGCCTTACCTTTTGCCA TTCAGTCCATAACTTTCTTTTTTCTTAAAAAAAGTGCTTAACGTATCAACCTTCCAATTGACTCACTATAAAACATATAT TAATTAATTACTATTTTTTCTAAAAATTAACTACAATATTATTTGAATTAACTATGAAATTTGATTGACAATGTTTGCAG GCACTTCGGTTTCATAGCTGTAAGAATCTAGCGCTTAGTGCAACGAATCACATCAACAGCCCAAGAAATCACATAAGTAT AAGTACATGCAGTGACTCTAGCATTTCCAATATTCATGTTACTGCCCCAGAGGAAAGTCCTAACACCGATGGGATTGATA TCTCAGGATCAACTAACATCCTCATTAAGGATTCTACGATCCGAACTGGTATTTAATTAATACATACTCTTCATTTCATT TTCTATCCTACACCATCACTATTGCCATATATTTAAATTGATTATTAGAAATCATAAAAACAGAACAAATTTAACATGAT TTGTTTATTTTCCTTAATTATTAATTATTATACATACAGGAGATGATTGCATTGCCATCAATGATGGTTCCTCTTTTATC AACATAACTGGTATTACATGTGGTCCTGGCCATGGCATCAGGTCAATTTCATTCATTTTGAGATTATGTTATTGATATGC TTGACTAAAATTTAAACTCACTTTGGTTTGTGTTGTTGATATTTAGTGTTGGGAGCCTCGGGAGAGATAGAAAGTTGGCT AAAAAACACTTTTGGCCCCTGATGTTTCAAGTTTGTGCAAATTATGCCCCTATTCTATTTTTGTCGACGTTTCTACCCCT CATGTTTTCAAACAGTGCACCGTCTACCCATCCGTCACTCAGGCTTTCTCAGGAGAGGTTCCTGAGTAGATTGGAGAGAT GAAGAGGAGTATATAAAGTTGATGATGATCAAGGAAATGATATCAATTAAATTTGCTCGATGTATATATCAATTATGTAT GTAACTTAACTGATTAAATGCATGTTTTGTTACTTACAGGTCTTGAGTTTGAATCTCCCATGCCCAATTTTTCCAATTTC ACTTGTAATTTCCATGTGACAGATCCAAATAATATAAAAAAAAGTAAAATTAGTTCATTCCGTTAGTTTTTTAACGTGTC TGAGTGACAGAGGGGTAGACGGTGCACTGTTTGAAAACATGAGGGGTAGAAACATCGACAAAAATAGAGTAAGGGCATAA TTTGCAAAAACTTGAAACATCAGGGGCCAAAAGTGCTTTTTAGCCTAGAAAGTTTGAAACAGTAGAAGAGGTACATGTGA GAAATTGCATCTTCCAAGGAACCACAAATGGTGCCAGAATCAAGACATGGCAGGTAACAAACAACTTAACAAACAACTGA CTCTAATTTCATTGAAATTCAGCCATTATTTGTTTGATTTGTAAAAAAAAAAAGACATTTGGCACTAGTTTTTTATGAAC TACTATATATAAAGAAACAAGTGATTAAGCCACAATTATTTTATGTGTTTTTAACCAGGGAGGATCTGGGTATGCGAGGA AGATAACTTTTGAAGATATTATACTCGATGAAGCAGAGAACCCTATCATCATTAACCAAAATTATAGGGCTTATCAACGT AATGGTCTTGCGGAGGCAGTGAAAGTGAGTGAAGTTACTTTCCGTAACTTCACAGGAAACTCAGCTTCCGAGGAGGCAAT CACACTAAATTGTGACCCTACCGTCGGCTGCACCGGCATTATATTAAATAAGATTAACATAAAATATGTATCCGCAGGGA AAAGAACACGTGCATTGTGTAATAATGTTCGTGGGTCATTCTCTTTATGTAGTCCAAATGTTGTCTGTTCTTGACTTGAG ATGTACTAGCCAATTAGGTTCTTGAAGTAGTAAATAGGATCCAGTGCATTTAGCTATGTTTAAACCCTAAGTATCGTTTC GACAAAAAAAACCTAAGTATCATTTTCTAGTAAGGTTGACTTCATCTCTTGTACTTAGTTATTTCACTTTGCACTGGATT CTATTTCTGTAGTCCAGCAGGATTGGTTTTGTACTTTTGGGCCATTGGTCCAGTTTCAATGAAATCCTTGATCCAGTGTC AAAAAGAAACATTGTTATACTTGACAAGATGAACTTCTATAACTTTT
CDS sequence (LotjaGi1g1v0305700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGCCTATTTTCTGTGATTTTTATGTTGTTTGTTGCTATACCTAGCTTGTATGCTAGAGTAACACCCAATGCAGG ATCTAGCAACTTCAATATTGTTAACTATGGTGCAAAAGGGGATGGCCAAACTGATGATTCACAAGCTTTTGTGAAAGCAT GGAATGATTTGTGTGCTGCAACTCAAGGTGCCCCAACACTTCTCATACCCAAAGGGAAATCATTCATGTTGCAACCTGTG TCATTTAAAGGTCCTTGCAAAACTAACAATGTTAACATTGAGCTTCAGGGCACTCTTGTTGCCCCTAAAAGTGTTGTTGC TTGGAAATGGGCAAATAATAATAAGGGAGCATGGATCGATTTCTCAGGCATAAATGGCCTTGTTATTAGGGGAGGAGGAA CATTCGATGGGCAAGGTGCTACATGGTGGGCCAAGTACTCTGATGATTCTGACAGGCCAAGTGCACTTCGGTTTCATAGC TGTAAGAATCTAGCGCTTAGTGCAACGAATCACATCAACAGCCCAAGAAATCACATAAGTATAAGTACATGCAGTGACTC TAGCATTTCCAATATTCATGTTACTGCCCCAGAGGAAAGTCCTAACACCGATGGGATTGATATCTCAGGATCAACTAACA TCCTCATTAAGGATTCTACGATCCGAACTGGAGATGATTGCATTGCCATCAATGATGGTTCCTCTTTTATCAACATAACT GGTATTACATGTGGTCCTGGCCATGGCATCAGTGTTGGGAGCCTCGGGAGAGATAGAAAGTTGGCTAAAAAACACTTTTG GCCCCTGATGTTTCAAGTTTGTGCAAATTATGCCCCTATTCTATTTTTGTCGACGTTTCTACCCCTCATGTTTTCAAACA GTGCACCGTCTACCCATCCGTCACTCAGGCTTTCTCAGGAGAGGTTCCTGAGTAGATTGGAGAGATGA
Protein sequence (LotjaGi1g1v0305700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGLFSVIFMLFVAIPSLYARVTPNAGSSNFNIVNYGAKGDGQTDDSQAFVKAWNDLCAATQGAPTLLIPKGKSFMLQPV SFKGPCKTNNVNIELQGTLVAPKSVVAWKWANNNKGAWIDFSGINGLVIRGGGTFDGQGATWWAKYSDDSDRPSALRFHS CKNLALSATNHINSPRNHISISTCSDSSISNIHVTAPEESPNTDGIDISGSTNILIKDSTIRTGDDCIAINDGSSFINIT GITCGPGHGISVGSLGRDRKLAKKHFWPLMFQVCANYAPILFLSTFLPLMFSNSAPSTHPSLRLSQERFLSRLER
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| PANTHER | 8 | 260 | 253 | 4.1E-102 | – | |
| PANTHER | 8 | 260 | 253 | 4.1E-102 | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| Gene3D | 17 | 272 | 256 | 4.0E-79 | ||
| SUPERFAMILY | 20 | 258 | 239 | 1.32E-74 | ||
| Phobius | 21 | 315 | 295 | - | – | |
| Pfam | 64 | 259 | 196 | 5.5E-54 | ||
| ProSitePatterns | 241 | 254 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0305700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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