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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0305700 |
| Transcript ID | LotjaGi1g1v0305700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pectin lyase-like superfamily protein, putative; TAIR: AT4G35670.1 Pectin lyase-like superfamily protein; Swiss-Prot: sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720; TrEMBL-Plants: tr|G7JXT8|G7JXT8_MEDTR Polygalacturonase/glycoside hydrolase family protein; Found in the gene: LotjaGi1g1v0305700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74477037..74480300) extracted from Lotus japonicus Gifu genome v1.2.
AAGATACTTTATTTGTAATTATACTGGTCTAAATACTAGTATGGATAGCCTAAATGGTACTTGATAAATTAAAATTTCCC AAGTCCTGGGTTCAAATCTACTGGTACCTAGATACCAAAAAAATACTGGTCTAAATGAGTTTTACTAGAATTGTAATTGA CCTTTTCATTTTCTTTGACGGAATAGGAGAATTTATGCATGAAATAACTAAATCATAGGCCCTAAATCAGCAAAATGTAG ACAATGAAATTATTTTTCACAATGCAATTGGACTTCGCAAGACAAAGATTTGAATGCCATTATTGCTGATTACAATTTTC CTGCAAGGAATGGTGTTCATCCAGTATATATAATAAGTTACCATTTCACCACTTTTCACATCAAAACTTTATTCGAGCTT CTGAATCACCTCATAGTTTTTTCCCCCACCAATATGGAAGGCCTATTTTCTGTGATTTTTATGTTGTTTGTTGCTATACC TAGCTTGTATGCTAGAGTAACACCCAATGCAGGATCTAGCAACTTCAATATTGTTAACTATGGTGCAAAAGGGGATGGCC AAACTGATGATTCACAAGTATATAAGTTTTTAGTTTTTTTTTATATTTTCATATTATTTGATATAATTAAGTTTTAAATA TTTATTGTTAGGTTTTCAAATTGAATCTGACACCATTCTAATTGAACTTTCCAAGGCTTTTGTGAAAGCATGGAATGATT TGTGTGCTGCAACTCAAGGTGCCCCAACACTTCTCATACCCAAAGGGAAATCATTCATGTTGCAACCTGTGTCATTTAAA GGTCCTTGCAAAACTAACAATGTTAACATTGAGGTAAACGAATATGAACCATGTTTTTACTAGCTACTAACATTTAGTAA TTTTCTTTTTTGTAGCTACTTACATTATATACATTTTTTTGCTTGACAGCTTCAGGGCACTCTTGTTGCCCCTAAAAGTG TTGTTGCTTGGAAATGGGCAAATAATAATAAGGGAGCATGGATCGATTTCTCAGGCATAAATGGCCTTGTTATTAGGGGA GGAGGAACATTCGATGGGCAAGGTGCTACATGGTGGGCCAAGTACTCTGATGATTCTGACAGGCCAAGTGTAAGTACTTG AAATACATGATCCAGAATTTATTATATTTTAAATAAGTGAACATGTCAAATTGCCTTACCTTTTGCCATTCAGTCCATAA CTTTCTTTTTTCTTAAAAAAAGTGCTTAACGTATCAACCTTCCAATTGACTCACTATAAAACATATATTAATTAATTACT ATTTTTTCTAAAAATTAACTACAATATTATTTGAATTAACTATGAAATTTGATTGACAATGTTTGCAGGCACTTCGGTTT CATAGCTGTAAGAATCTAGCGCTTAGTGCAACGAATCACATCAACAGCCCAAGAAATCACATAAGTATAAGTACATGCAG TGACTCTAGCATTTCCAATATTCATGTTACTGCCCCAGAGGAAAGTCCTAACACCGATGGGATTGATATCTCAGGATCAA CTAACATCCTCATTAAGGATTCTACGATCCGAACTGGTATTTAATTAATACATACTCTTCATTTCATTTTCTATCCTACA CCATCACTATTGCCATATATTTAAATTGATTATTAGAAATCATAAAAACAGAACAAATTTAACATGATTTGTTTATTTTC CTTAATTATTAATTATTATACATACAGGAGATGATTGCATTGCCATCAATGATGGTTCCTCTTTTATCAACATAACTGGT ATTACATGTGGTCCTGGCCATGGCATCAGGTCAATTTCATTCATTTTGAGATTATGTTATTGATATGCTTGACTAAAATT TAAACTCACTTTGGTTTGTGTTGTTGATATTTAGTGTTGGGAGCCTCGGGAGAGATAGAAAGTTGGCTAAAAAACACTTT TGGCCCCTGATGTTTCAAGTTTGTGCAAATTATGCCCCTATTCTATTTTTGTCGACGTTTCTACCCCTCATGTTTTCAAA CAGTGCACCGTCTACCCATCCGTCACTCAGGCTTTCTCAGGAGAGGTTCCTGAGTAGATTGGAGAGATGAAGAGGAGTAT ATAAAGTTGATGATGATCAAGGAAATGATATCAATTAAATTTGCTCGATGTATATATCAATTATGTATGTAACTTAACTG ATTAAATGCATGTTTTGTTACTTACAGGTCTTGAGTTTGAATCTCCCATGCCCAATTTTTCCAATTTCACTTGTAATTTC CATGTGACAGATCCAAATAATATAAAAAAAAGTAAAATTAGTTCATTCCGTTAGTTTTTTAACGTGTCTGAGTGACAGAG GGGTAGACGGTGCACTGTTTGAAAACATGAGGGGTAGAAACATCGACAAAAATAGAGTAAGGGCATAATTTGCAAAAACT TGAAACATCAGGGGCCAAAAGTGCTTTTTAGCCTAGAAAGTTTGAAACAGTAGAAGAGGTACATGTGAGAAATTGCATCT TCCAAGGAACCACAAATGGTGCCAGAATCAAGACATGGCAGGTAACAAACAACTTAACAAACAACTGACTCTAATTTCAT TGAAATTCAGCCATTATTTGTTTGATTTGTAAAAAAAAAAAGACATTTGGCACTAGTTTTTTATGAACTACTATATATAA AGAAACAAGTGATTAAGCCACAATTATTTTATGTGTTTTTAACCAGGGAGGATCTGGGTATGCGAGGAAGATAACTTTTG AAGATATTATACTCGATGAAGCAGAGAACCCTATCATCATTAACCAAAATTATAGGGCTTATCAACGTAATGGTCTTGCG GAGGCAGTGAAAGTGAGTGAAGTTACTTTCCGTAACTTCACAGGAAACTCAGCTTCCGAGGAGGCAATCACACTAAATTG TGACCCTACCGTCGGCTGCACCGGCATTATATTAAATAAGATTAACATAAAATATGTATCCGCAGGGAAAAGAACACGTG CATTGTGTAATAATGTTCGTGGGTCATTCTCTTTATGTAGTCCAAATGTTGTCTGTTCTTGACTTGAGATGTACTAGCCA ATTAGGTTCTTGAAGTAGTAAATAGGATCCAGTGCATTTAGCTATGTTTAAACCCTAAGTATCGTTTCGACAAAAAAAAC CTAAGTATCATTTTCTAGTAAGGTTGACTTCATCTCTTGTACTTAGTTATTTCACTTTGCACTGGATTCTATTTCTGTAG TCCAGCAGGATTGGTTTTGTACTTTTGGGCCATTGGTCCAGTTTCAATGAAATCCTTGATCCAG
CDS sequence (LotjaGi1g1v0305700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGCCTATTTTCTGTGATTTTTATGTTGTTTGTTGCTATACCTAGCTTGTATGCTAGAGTAACACCCAATGCAGG ATCTAGCAACTTCAATATTGTTAACTATGGTGCAAAAGGGGATGGCCAAACTGATGATTCACAAGCTTTTGTGAAAGCAT GGAATGATTTGTGTGCTGCAACTCAAGGTGCCCCAACACTTCTCATACCCAAAGGGAAATCATTCATGTTGCAACCTGTG TCATTTAAAGGTCCTTGCAAAACTAACAATGTTAACATTGAGCTTCAGGGCACTCTTGTTGCCCCTAAAAGTGTTGTTGC TTGGAAATGGGCAAATAATAATAAGGGAGCATGGATCGATTTCTCAGGCATAAATGGCCTTGTTATTAGGGGAGGAGGAA CATTCGATGGGCAAGGTGCTACATGGTGGGCCAAGTACTCTGATGATTCTGACAGGCCAAGTGCACTTCGGTTTCATAGC TGTAAGAATCTAGCGCTTAGTGCAACGAATCACATCAACAGCCCAAGAAATCACATAAGTATAAGTACATGCAGTGACTC TAGCATTTCCAATATTCATGTTACTGCCCCAGAGGAAAGTCCTAACACCGATGGGATTGATATCTCAGGATCAACTAACA TCCTCATTAAGGATTCTACGATCCGAACTGGAGATGATTGCATTGCCATCAATGATGGTTCCTCTTTTATCAACATAACT GGTATTACATGTGGTCCTGGCCATGGCATCAGTGTTGGGAGCCTCGGGAGAGATAGAAAGTTTGAAACAGTAGAAGAGGT ACATGTGAGAAATTGCATCTTCCAAGGAACCACAAATGGTGCCAGAATCAAGACATGGCAGGGAGGATCTGGGTATGCGA GGAAGATAACTTTTGAAGATATTATACTCGATGAAGCAGAGAACCCTATCATCATTAACCAAAATTATAGGGCTTATCAA CGTAATGGTCTTGCGGAGGCAGTGAAAGTGAGTGAAGTTACTTTCCGTAACTTCACAGGAAACTCAGCTTCCGAGGAGGC AATCACACTAAATTGTGACCCTACCGTCGGCTGCACCGGCATTATATTAAATAAGATTAACATAAAATATGTATCCGCAG GGAAAAGAACACGTGCATTGTGTAATAATGTTCGTGGGTCATTCTCTTTATGTAGTCCAAATGTTGTCTGTTCTTGA
Protein sequence (LotjaGi1g1v0305700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGLFSVIFMLFVAIPSLYARVTPNAGSSNFNIVNYGAKGDGQTDDSQAFVKAWNDLCAATQGAPTLLIPKGKSFMLQPV SFKGPCKTNNVNIELQGTLVAPKSVVAWKWANNNKGAWIDFSGINGLVIRGGGTFDGQGATWWAKYSDDSDRPSALRFHS CKNLALSATNHINSPRNHISISTCSDSSISNIHVTAPEESPNTDGIDISGSTNILIKDSTIRTGDDCIAINDGSSFINIT GITCGPGHGISVGSLGRDRKFETVEEVHVRNCIFQGTTNGARIKTWQGGSGYARKITFEDIILDEAENPIIINQNYRAYQ RNGLAEAVKVSEVTFRNFTGNSASEEAITLNCDPTVGCTGIILNKINIKYVSAGKRTRALCNNVRGSFSLCSPNVVCS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 20 | 5 | - | – | |
| PANTHER | 16 | 397 | 382 | 1.8E-158 | – | |
| PANTHER | 16 | 397 | 382 | 1.8E-158 | – | |
| Gene3D | 17 | 395 | 379 | 3.4E-122 | ||
| SUPERFAMILY | 20 | 397 | 378 | 3.31E-116 | ||
| Phobius | 21 | 398 | 378 | - | – | |
| Pfam | 64 | 385 | 322 | 7.2E-89 | ||
| SMART | 184 | 210 | 27 | 560.0 | ||
| SMART | 211 | 232 | 22 | 7.0 | ||
| ProSitePatterns | 241 | 254 | 14 | - | ||
| SMART | 264 | 285 | 22 | 140.0 | ||
| SMART | 325 | 352 | 28 | 6200.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0305700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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