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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0311900 |
| Transcript ID | LotjaGi1g1v0311900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kelch repeat-containing protein; TAIR: AT2G21950.1 SKP1 interacting partner 6; Swiss-Prot: sp|Q9SJ04|SKIP6_ARATH F-box/kelch-repeat protein SKIP6; TrEMBL-Plants: tr|G7JAA2|G7JAA2_MEDTR SKP1 interacting partner 6; Found in the gene: LotjaGi1g1v0311900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75602286..75609261) extracted from Lotus japonicus Gifu genome v1.2.
GACCAACTCGGCCATCTCAACATTTTCTTGTTAAAGGATCCACAAATAAATTATTTCAATAAATAAAAAAAAAATCCAAT AAAATAGCCCATTTGCTCAGAAAATCAAAACGAGGGGGAAGGAAAGGCAGAGAGAGCCAGAGAGCATGGCGGATTCCGGC GAACCAAAGGAGGAGGAGAAGAACCAGAACCAGAACCTGATCCCGAACCTTCCAGATGACGTAGCAGTGAATTGCTTGGC TCGGGTCCCTCGTTCGGACCACCCGAACCTCTCCCTCGTTTCCAAACCAATCCACTTCCTCCTCACTTCGCCACTCTTCT TCAACGCGCGTTCCCTTCTCAACTGCACCCAACACCACCTTTACCTCACGCTCCGCACACGCGCCTCCGCGCTCCAAATC TTCACGCTCCACCGCAAAACCCTCCTCCCCCTCCCTCCTCTCCCCTCCCCCGCCCTCGGCTCCGCCTACGCCGTCCTCGG CCCCACCATCTACATCCTCGGCGGCTCAATCAACGACGTCCCCACACCTCACGTCTGGCTCCTCGACTGCCGCTTCCACC GCTGGCTCCCCGGCCCCTCCATGCGCGTCGCGCGTGAGTTCGCCGCTGCTGGCGTCATCGACGGCAATATCTACGTCATC GGCGGGTGTATCGCCGACAACTGGACCCGCTCCGCCCACTGGGCGGAAACCCTCGACCCTGCCACCGGGCGGTGGGAGCG CGTCCCGAGCCCGCCTGAGATCCAGGAGAAGTGGATGCACGCTAGCGCGGTTGTCGGGGGTAAGGTTTACGCCATGGCTG ATCGCGGCGGCGTCGCGTTCGACCCGCGGAGCGGCGCGTGGGAGAGCGTGAGTGGCGAGCTTGACCTTGGGTGGCGGGGG AGGGCGTGTGTGGTGGATGAGGTGCTGTACTGCTATGATTTCTTGGGGAAGATCAAGGGGTTTGATGTGAAGCGAGGGTG TTGGAGGGAGCTAAAGGGGTTGAACAGTTTGCCGATTTTTCTGTGTGGAGCAACCATGGCTGATGTTGGTGGAAAATTGG TTGTGGTTTGGGAGTACCAAGCGGTCAAGGGTGGTATTGGCAAAGAAATAGATATTTGGTGTGCTGAGATTGAGGTGAAC AAGAAGCAGAATGGGGAATTGTGGGGTGGTGTTTGCTGGTTTGGCAAGGTTCTTTCTGTTCCAAAAGGGTCCTCCATTGT TCATTGTTCTTCTGTAGCTGTGTGAGAACTTTGATATCTGTATCACATTGCCTGCTTTTTATGTCAGGTATCCCACTCTT ATTCTCTTTCCTAATTGTGTTTTATTTCATGATTCTAGTTGAATTGATGTAGACAAGGAAGGAGTATGAGTAGATGAATT GGATAAGTGAACTCCTTAGCAGTTTCTGTGGAATTTTATTTTTCTTGTGAAATTGTTAGAGAAAAGATCTTATGAATACT AGTAATTTGCAAATGTAATCAGCATGAACTTGAATCAAATTATGTAGTGCAATTGGCTAACTCACTCAGTTGTGCAATGT GTGTCTTGGTTAAAAATATAGCCCTGAATAATGTACTTTGCTTGTTCATTAGCATGCTGGTAAACACTTGACAAGGTTGC TGGTTGATTCTCTAGCAACTAAGGTAAATAGATCATAACTTCCAATGCAATCATGACTAGAATGGAAATATGATGGAATA GCCATAAGGAAAATTTTGATAGTAGTCTTAATATTGTGATTGGGTTCAACTTGTGATTGGCAATTTGGCATATAGCTTTT GTGCTCGAAAATTTTCTGTGAATTCCACATTATATATTGTTCATATTCATTCTAGTTTGAAGATGTTATACTCTTTTTCC CCCAGTTTTTTGTTAGGCCAAGGTGTTCTGGTTTATATTTGTGGTTGTGGTGAAATTCTTTCGGCTTTTATTTCAGGTCA CCTGTTTCTATCAACACATATCCTACTGGATTGAGATCCTTTTCAGGTGTAACTAGAGCATCTCAAGATTTTTTACAGTA AATTGCAGCCACCGGATGTTGCAAATTCCTTTATTGTTTGATCAGTTGACTGCAATGTTGTATGAATAAATAGGAGCTCC TCTTACAGTAGTGAATAAACTGTAAATTTAGTGTGTATACTTTAGCAGTTCCATAGTCATCTTTCCCCTAGCTTTGCAAT CTGTATGCTGTATGAGTGAATTTGTAAGTTGTACAGAGTTGGTACTAAAGTCCTCACCCAATAAACTGCACTGAGTTTCG AGGTTTATATACCTCAGCTTATGACTATCATTCTGTCAACTATATTACTTGCAGTGTTGTTAATGGCAGGGAGCCAAAAA CCTGCCATATTTAACATATAATGATGGCAGATTATAGCGGATTATGCGGAATATAGTCCATGGTGGATAGCCAAAGACCT GCCATGAGATTCCGCTACCCCGCCATGGCGAATATTTGATAACACTGATTGCTTGCTGGTTTAATGGGCGTTAGTGAACA AATATTGTTGCAGAACGCATGTATGCTAGGATATAAGCTGGCATAAGATGATTGAAATTGTGCAGGTATTGAGGGATGTG ATTGGAAGGAATGTTGAACAAGCATTACTCAGTTATTTGGACAATCATTTGACATATATACATTGATCCCTACTTACATC TAAATAGAACAAAATATTGTCTGTCACAGTGGCATATTTTCTCACTCATTACTACTGCTCTTAGAGGTGTAAACTCTTTA AGACACGGTTGGTGTATTTTTTACAAGGTTACTCTTTGACATATGTTTATTCGTTTATAAAGTCAATTAACTTGCTTCAT ATATTGACTTAAAAAAGAAGAACCAACAAGATAAAATCAAGCGCTCTCTACTCCTCTAAAAGGAGAAGCGAAACTACTCC TCTAACTAAAAGGAGAAGTGAATCTGTCTTCACTTTGTGCATTATAAGTATAGCGGCATTCTTTTGAGGAAGGATGTCAC TTGCAAAGCAGTTGTTCTCAATCCATTTATTCCTGGATCGTATATAAATCCTCTCTAACTAAAAGGAGAAGTGAAACTCC CTTCACTTTGCGCATTATAATTATAGCGGCATTCTTCTGGGGAACGCAGTCGCTCACAAAGCAGTTGTTCTCAATCCCTT TATTCCAAGATCGTATATAAACAAGCGGCTCACGCTCGCATCTGTTATTTTCAAAGAGATCCAGGGATCATTTAAAGAAA AGTGTTAATTAGCTCCAGTTGCACCCATGAAGACTAGAGATAACTATATGTAAGATAAAAAAAAATATATAGAAAGTAAG GGTCACTATCCACCAAAACAGACCTCTTTAAAGGCATACATATCTAAATCCAATTACAGCAAACATCCTGATCTGCCTGT ATAATACACTGAACAAAAAAACATTAATATTTGCTATTTCATGCCAAATTATTGCTGACACAAATTGCATAAAAGCTAAC GATAGACCACGTAGATTATTACATCTTATTTTTCTGGGAACAAAAAAGATACATCACATTCCCATGCTTATTGCAATTTG AAAATAATATAAACACTACATGGTTGTGTCTTTGTTTGTGCTTGCATCATACTTAACAGCCATCTTCACCCTTTAGAAAC CCATTGATTTGTTCTAGTGCCTGAGAAATACGTTGGCACAAATTTGTCAGTATATATCATACAAATGTAGATCTAATTTG AGCTTACAGGAACACTCAGGGCAAAAGCAAAGTAAAATGCAATGAGCAGAAAGTGAAAAACCTCGATTGCAATAGTCTTT GGAGATAAATGCGACGCATCTTTTTGGTCCAGTTTTGCTGCTATATCTGCACAAAAAACAGAACACAATTAATCATCGGC GTGTATAGGATGAAAGAATAGTACACTTTTAAACTTCACAGAAATATTTAACATACTTGACCAAAAAGAAAACAAAATCT ATAACATAAATAATCCGAATATCTTGCTTCATTCGACAATCTTTGAAGATTAAAACTATGTAGAACAGTAAGACAAAAAA CCGCATAAGTCACAGGAGCCTATTAATAAATACCAATCCCTTTCCTGTTCTATTCCCACAGATTCTGGACATAAACACTA CTCTTATTAAAAACGATGAAACAACATTTGCAGGCATACTTTCCAAGGAGACCCTGGCATTGGCATTGGCATATGCTTCG CTTCTTTCTTCAAAAAGAGAAGACAAACGCATGAAAGTCTGCAGGTAAAAATTACAAAGGATAAAATTATTTAGCAGTTG AAATAATTTTGATGCAGATTCCCATCCCAGCTCAGTTTGTGACTTCATAATTACCCTCTTGCATTTTGCAAAAGAAAAAC ACTTTTAAGAAGGAAAAAATCTTACCTTTGTATATGCATCTCCAGCTTCATAATGTAGAAGAGGGCGAGAATTAGTTCCT ACTTTTGTTATTCTCCGAGCCAAGGCTTCTACAGGTACATCCAACCAAACACTAATCCCCTTATGCATATATTTCCTGGC AATATTCAAGTATGTGTCAACACTTTGTAAATCCTTCTCGAATTGATTCTATAGCCTGAATCAATTCTGAGGAGAAGCTT CAGTGATTAGTTTTTGGGTGCCAACATTAATTATGAGGAGAAATAAATTGATACAAACATGCTATGAACTGAGAAGAGTT AATCATAAAAGTGAAGGTAAAACTTTTCTCACTATAAGTAAGTCCTTTATTATACCAATTGATGGGCTTCACAACAGCAC CTCCACCAGTTGAAATAACATATCTTCGCATCATTGACAGCTTCTTCAGTATCTCTGTCTGCAACCGTAAAATAAGCATG GAAAATGAACAGAAATGTGATCATAGAACCAAGAAAGAAAAAGAATAGCAACACACAAATCGGAAACGTTGTGCATTTTA TCTGACCTCCTTATTACGGAAAAAAGCCTCCCCATAGTTCTTGAATATATCAGCTACAGAAGTTTTATCAACCTCCTCCT CGATCAATGCATCACTGCTCCCATAAATGTAAGAACATAATATTGATAAATGCAGAAAATATATATTTAGCAGAAAATTT TGATGTGCCTAAAAAATAAAATTCTCCCAACACTAAACCAAGCATGCACTATATCAGTTGAATATCATACTAACCTGTCG AAAAAGGAATAAGAAAGCACTTCTGATAAAATCTTCCCCACAGTTGTCTTCCCAGATCCCATCATTCCTGCATGTAAAGT TCAAAATGCTGAATACCAAAGTAATTACATTGGCAATGTATACCTGGTAAGCACAAATCCTTCTACCAAGAAACTGACCA ACAAGATATATACAACGTCCATTTAAATATGGCTCGATCTCTTGTGATTTACTCTGCAATTTAATTAATTCACATAAGAC AATGGCACATAGATGCTCACACAAGCAAAACTAAGTTCAAATTACCATTTCTTGATGAATTACATAATAGAAGCACTACA ACGAAAGGGCTTAAATTAATTAAAAATGACAATTCGCATCATGCTTTACCTTCAAAATCATTTCTTCATCAAGAGGACCA CGAAAGCTCCCAGTTTCCAATATAGAAGCTACAAGAGTGACATTTGAAACAAAAAGAATATGTTAGGGAAGCCTTTGTTT ATTCAATGGGAGGAGCATAAAATTAAACCTCTAAAAAGAAAGAAAAAACAGAAACTAATGCTTCGAGGGCAGAACTGCAA TTTCCATACAGTTACGAATTTCCTATCCACCGATAATTTATACAAAAATTGTTCCTTTCTCCTTCTTCCCATTATTAGCT ATAAGAGTAAACCCTCAATTTTCTACATCCATCAAATTGATCCTTAATATAAGCAAATCTCATTACCTAATAGGCCAATA GCACTTGAGTCTTGATGAGACTGACAAACCACATATTAGCAACTAATGTGCCTAATATCATCTAAATATGTAGCTTTTTG AAGTTATGAATTATGGATGTGATTTTGTGAAGGAAAAAAATTAGGAACCAAATTGAGGATTTACACTATAAGCTCACTAA TCAAAACTGGTATTCCTTTGGGTAAAAAAAAATCACCCCTTCAAAATTGACATGGAGAAGAACAAGAATATAATCCATCA TCACTCAAAGTGGATTGCATGTTTTGAAATTCCTCTATAATTTATTCAAAAATTTGTGAAAAAATTACAAGTACGAGAAT TCATAGATGCAAATTGTCAGAAGTTGTTATACTTTAAATGGCAACCTGGAATATTGTTGTACGAGGAACATGCAACCACA ACAGGAACCGTTCTTTGCTGACTCCTTTGCAATAATGACAACCTATGCGAAACAAAACCCTGAAACTTCTTCGGCTTCAC AAAACCACTAGACATTCTCAGAGAACTGCTTGGTCCTGTTCTTCCGAGCTTGTCTCCGACCACCATGGTCGACAAGTGAA AGCTGTGAACCGCTTTAGCTTCCATGGTTTCTTCAGTTCGAAACTGCCGAATTCAACGACAGTAAGTTAAATCAATGATA AAATGCGGTTTCAGCGTGATTTTGACCCGTTAAGATAATGGATATGACAGAATCAGTGAATAAATAAATGCAAATGGAAC AAGACGACAAAATTAGTAGCTGGAATGGAGTGAGTTAATCCAGAACGGAGCATAAACAAATATGAAATATTCGAAAATCG ATGTCACATTGATATATGAGTTTGATTTGAATAGGATCCTATGAATGCTGAAAAAAATAGTAAAATGTAAGCAGAGAGAG ATTCTGAAACCTTTTCACCTCTTAGAACACATTACAGAATTGTTAAAATCTCAATTATTATGAACTTTTCATTCAGTAAT TGTAAAAGGAAAATTGTGAGTGGTGCTGACTGCTGAGTGCTACTCCCACTGAGTCGTATGTCGCCAGTTTGGTTGGCAAA ATGATTGTGGCAAGTGACACATCACATAGCATGCTCTCCAACCACGAAAGATTGGAAGGATGGTCTCGGATAAGAAGTTT ATTAGAGCTTGTTTGC
CDS sequence (LotjaGi1g1v0311900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGATTCCGGCGAACCAAAGGAGGAGGAGAAGAACCAGAACCAGAACCTGATCCCGAACCTTCCAGATGACGTAGC AGTGAATTGCTTGGCTCGGGTCCCTCGTTCGGACCACCCGAACCTCTCCCTCGTTTCCAAACCAATCCACTTCCTCCTCA CTTCGCCACTCTTCTTCAACGCGCGTTCCCTTCTCAACTGCACCCAACACCACCTTTACCTCACGCTCCGCACACGCGCC TCCGCGCTCCAAATCTTCACGCTCCACCGCAAAACCCTCCTCCCCCTCCCTCCTCTCCCCTCCCCCGCCCTCGGCTCCGC CTACGCCGTCCTCGGCCCCACCATCTACATCCTCGGCGGCTCAATCAACGACGTCCCCACACCTCACGTCTGGCTCCTCG ACTGCCGCTTCCACCGCTGGCTCCCCGGCCCCTCCATGCGCGTCGCGCGTGAGTTCGCCGCTGCTGGCGTCATCGACGGC AATATCTACGTCATCGGCGGGTGTATCGCCGACAACTGGACCCGCTCCGCCCACTGGGCGGAAACCCTCGACCCTGCCAC CGGGCGGTGGGAGCGCGTCCCGAGCCCGCCTGAGATCCAGGAGAAGTGGATGCACGCTAGCGCGGTTGTCGGGGGTAAGG TTTACGCCATGGCTGATCGCGGCGGCGTCGCGTTCGACCCGCGGAGCGGCGCGTGGGAGAGCGTGAGTGGCGAGCTTGAC CTTGGGTGGCGGGGGAGGGCGTGTGTGGTGGATGAGGTGCTGTACTGCTATGATTTCTTGGGGAAGATCAAGGGGTTTGA TGTGAAGCGAGGGTGTTGGAGGGAGCTAAAGGGGTTGAACAGTTTGCCGATTTTTCTGTGTGGAGCAACCATGGCTGATG TTGGTGGAAAATTGGTTGTGGTTTGGGAGTACCAAGCGGTCAAGGGTGGTATTGGCAAAGAAATAGATATTTGGTGTGCT GAGATTGAGGTGAACAAGAAGCAGAATGGGGAATTGTGGGGTGGTGTTTGCTGGTTTGGCAAGGTTCTTTCTGTTCCAAA AGGGTCCTCCATTGTTCATTGTTCTTCTGTAGCTGTGTGA
Protein sequence (LotjaGi1g1v0311900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MADSGEPKEEEKNQNQNLIPNLPDDVAVNCLARVPRSDHPNLSLVSKPIHFLLTSPLFFNARSLLNCTQHHLYLTLRTRA SALQIFTLHRKTLLPLPPLPSPALGSAYAVLGPTIYILGGSINDVPTPHVWLLDCRFHRWLPGPSMRVAREFAAAGVIDG NIYVIGGCIADNWTRSAHWAETLDPATGRWERVPSPPEIQEKWMHASAVVGGKVYAMADRGGVAFDPRSGAWESVSGELD LGWRGRACVVDEVLYCYDFLGKIKGFDVKRGCWRELKGLNSLPIFLCGATMADVGGKLVVVWEYQAVKGGIGKEIDIWCA EIEVNKKQNGELWGGVCWFGKVLSVPKGSSIVHCSSVAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 8 | 357 | 350 | 2.9E-120 | – | |
| PANTHER | 8 | 357 | 350 | 2.9E-120 | – | |
| SUPERFAMILY | 11 | 95 | 85 | 1.01E-7 | ||
| Pfam | 19 | 55 | 37 | 4.5E-5 | ||
| Gene3D | 64 | 325 | 262 | 3.7E-32 | ||
| SUPERFAMILY | 82 | 342 | 261 | 5.62E-51 | ||
| Pfam | 105 | 147 | 43 | 3.6E-7 | ||
| SMART | 114 | 160 | 47 | 0.0094 | ||
| Pfam | 150 | 197 | 48 | 4.4E-9 | ||
| SMART | 161 | 212 | 52 | 3.9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0311900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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