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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0312600 |
| Transcript ID | LotjaGi1g1v0312600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT5G64790.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9M088|E135_ARATH Glucan endo-1,3-beta-glucosidase 5; TrEMBL-Plants: tr|I3SSG9|I3SSG9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0312600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75687618..75689726) extracted from Lotus japonicus Gifu genome v1.2.
TATATATGTGTGAAAAATAACTACAATTAGAAAAAAAGTTCAACGAGTTGCATATATAACTATCCAACTTTTAAAACACT TAATTTAGACATTATTGTAACTGAAAACATCTAAGCAGAAAACCATATATGGTCCATATGTTGTTGTACTTTTGATAGTA ACTAATTATATATAAACATCTTCCATTTCTCTCTCACCTTGGTTAAACCAATTCAGCCTATAGGGTCAAACCATGGCTCG AGCCATGTTCACCATATGGGCACTTTTCTTGATTCAGATCCTAGCTCAAGGTGCCAATGGTGCAGAGAGCATTCCAGGCC TTGGTGTCAATTGGGGTGCACTAGCATCCCACTCTTTGGATCCTAGTATTGTTGTGGCTATGCTGAAGGACAATGGAATC AAAAAGGTTAAACTTTTTGATGCAGATTCTTGGACCGTGAGTGCTTTTTCTGGGACAGATATTGAGGTCATGGTTGGAAT TCCTAATGATCAATTGAGTAATTTTGCTGGAAGCTACGGCGATGCAGAGGATTGGGTACAAGAAAATGTTACCGAACATC TTCATAAGGGAGGAGTCAACATCAGGTACGACTTAATATCATGTTTGAATCAGTTTATTTTTCTTCAAAATCCATGGCGT TATATAGAAGCTACCAACAGAAGTTGTTCCCTAGAAAACATGTTGGAACAATGTCAAATACTCAAATTAACATGTTGGAT AATATCAACACTTGAATCGTTAATATTCCGGCCAATATTGGAATAATGTCAAATTAGCATGTTTGAATTAGTATATTGTT CTCTAGAATCAATTCTGACACGTAGAGCTAATCATTTTATTGCAGATATGTGGTTGTTGGAAATGAGCCATTCTTGGAAA GTTACAATGGTTCATACATAAAGGCCACATTCCCAGCAATGCAAAACATTCAAAAGGCCATTGATAAAGCTGGTGTTGGT GACAAAGTGAAGGTGACTACAGCTATGAATGCTGATGTTTACGAGTCTGCTACAAACCAACCTTCAGAAGGAGATTTCAG AAGTGGAATTCACGATCTCATGAAACAGATTGTACATTTTCTTCATGAAAAGAATTCACCATTTCTTGTCAACATATACC CTTTCCTCAGTCTCTATCAAAATGAAGGTTTCCCTCAAGAATTTGCATTCTTTGATAGCCAGAGTAGCACAATTAGTGAC AAGAATGCACAATATAGTAATATGTTTGATGCAAATTTAGACACACTTGTGTGGGCATTGAAAAAGGCTGGTTACCCTGA CTTGAGAATTGTGGTTGGTGAAGTTGGATGGCCAACTGATGGTGACAAAAATGCAAACCCCAACAACGCAAAAAAATTCT ACCAAGGGTTCCTAAAGAAAATGGCAAGCAAAAAAGGAACACCAATGCGACCAGGACCTATGGACGTGTACCTATTTTCC CTCTTTGATGAAAACTTGAAGAGCATTGCACCCGGTAACTTCGAGCGTCATTGGGGGATTTTTGGCTACGATGGGAAACC GAAGTTTCCTATAGATTTTTCAGGCCAGGGTCAAGAGAAATGGCCCGTGGCGGCGAAAGGGGTTCGGTACCAAGAGCATA AATGGTGTGTCCTCAACCGCGATGTCAAAAACTTCAGCCTCGTGCCAGATGCGTTGAGCTATGCTTGCGCCGGTGCTGAT TGCACAAGCTTAGGAATGGGATGTTCTTGTGGGAACTTGGATGTAGCTGGGAATGCTTCTTATGCTTTCAACCAATATTA TCAGACAAGGGACCAAAGCGTTGAGGCGTGTGACTTCAATGGAATTGCCAACATTGTTACGGAGGATCCATCAAAGGGAA GTTGTGTGTTCCCTATAGAAATTGAGAGTAGTGGAGAGATGCTCAGAGCAATGCATATATTGGGAAGCATTTTGATTGGA TTATCATTGTTTCATGTAACGTTTATGTAAGAACAGCATAGCTGGTTCATGAGGCATGATTGATATAATGTTGTTGATAT GTCATGCCATTATTTTGAATTTCTGCATTGGGATTTTTTAACCATTGTAGTAGTGTAATTTCTTTTGGATTCGTGTAATT TTTGAAAAAATAAATTCTGGCAACCGTAG
CDS sequence (LotjaGi1g1v0312600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCGAGCCATGTTCACCATATGGGCACTTTTCTTGATTCAGATCCTAGCTCAAGGTGCCAATGGTGCAGAGAGCAT TCCAGGCCTTGGTGTCAATTGGGGTGCACTAGCATCCCACTCTTTGGATCCTAGTATTGTTGTGGCTATGCTGAAGGACA ATGGAATCAAAAAGGTTAAACTTTTTGATGCAGATTCTTGGACCGTGAGTGCTTTTTCTGGGACAGATATTGAGGTCATG GTTGGAATTCCTAATGATCAATTGAGTAATTTTGCTGGAAGCTACGGCGATGCAGAGGATTGGGTACAAGAAAATGTTAC CGAACATCTTCATAAGGGAGGAGTCAACATCAGATATGTGGTTGTTGGAAATGAGCCATTCTTGGAAAGTTACAATGGTT CATACATAAAGGCCACATTCCCAGCAATGCAAAACATTCAAAAGGCCATTGATAAAGCTGGTGTTGGTGACAAAGTGAAG GTGACTACAGCTATGAATGCTGATGTTTACGAGTCTGCTACAAACCAACCTTCAGAAGGAGATTTCAGAAGTGGAATTCA CGATCTCATGAAACAGATTGTACATTTTCTTCATGAAAAGAATTCACCATTTCTTGTCAACATATACCCTTTCCTCAGTC TCTATCAAAATGAAGGTTTCCCTCAAGAATTTGCATTCTTTGATAGCCAGAGTAGCACAATTAGTGACAAGAATGCACAA TATAGTAATATGTTTGATGCAAATTTAGACACACTTGTGTGGGCATTGAAAAAGGCTGGTTACCCTGACTTGAGAATTGT GGTTGGTGAAGTTGGATGGCCAACTGATGGTGACAAAAATGCAAACCCCAACAACGCAAAAAAATTCTACCAAGGGTTCC TAAAGAAAATGGCAAGCAAAAAAGGAACACCAATGCGACCAGGACCTATGGACGTGTACCTATTTTCCCTCTTTGATGAA AACTTGAAGAGCATTGCACCCGGTAACTTCGAGCGTCATTGGGGGATTTTTGGCTACGATGGGAAACCGAAGTTTCCTAT AGATTTTTCAGGCCAGGGTCAAGAGAAATGGCCCGTGGCGGCGAAAGGGGTTCGGTACCAAGAGCATAAATGGTGTGTCC TCAACCGCGATGTCAAAAACTTCAGCCTCGTGCCAGATGCGTTGAGCTATGCTTGCGCCGGTGCTGATTGCACAAGCTTA GGAATGGGATGTTCTTGTGGGAACTTGGATGTAGCTGGGAATGCTTCTTATGCTTTCAACCAATATTATCAGACAAGGGA CCAAAGCGTTGAGGCGTGTGACTTCAATGGAATTGCCAACATTGTTACGGAGGATCCATCAAAGGGAAGTTGTGTGTTCC CTATAGAAATTGAGAGTAGTGGAGAGATGCTCAGAGCAATGCATATATTGGGAAGCATTTTGATTGGATTATCATTGTTT CATGTAACGTTTATGTAA
Protein sequence (LotjaGi1g1v0312600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARAMFTIWALFLIQILAQGANGAESIPGLGVNWGALASHSLDPSIVVAMLKDNGIKKVKLFDADSWTVSAFSGTDIEVM VGIPNDQLSNFAGSYGDAEDWVQENVTEHLHKGGVNIRYVVVGNEPFLESYNGSYIKATFPAMQNIQKAIDKAGVGDKVK VTTAMNADVYESATNQPSEGDFRSGIHDLMKQIVHFLHEKNSPFLVNIYPFLSLYQNEGFPQEFAFFDSQSSTISDKNAQ YSNMFDANLDTLVWALKKAGYPDLRIVVGEVGWPTDGDKNANPNNAKKFYQGFLKKMASKKGTPMRPGPMDVYLFSLFDE NLKSIAPGNFERHWGIFGYDGKPKFPIDFSGQGQEKWPVAAKGVRYQEHKWCVLNRDVKNFSLVPDALSYACAGADCTSL GMGCSCGNLDVAGNASYAFNQYYQTRDQSVEACDFNGIANIVTEDPSKGSCVFPIEIESSGEMLRAMHILGSILIGLSLF HVTFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| PANTHER | 4 | 466 | 463 | 4.2E-254 | – | |
| PANTHER | 4 | 466 | 463 | 4.2E-254 | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 465 | 442 | - | – | |
| Gene3D | 29 | 357 | 329 | 1.0E-123 | – | |
| Pfam | 30 | 349 | 320 | 2.8E-74 | ||
| SUPERFAMILY | 30 | 349 | 320 | 2.88E-83 | ||
| ProSitePatterns | 264 | 277 | 14 | - | ||
| Pfam | 370 | 439 | 70 | 1.8E-15 | ||
| SMART | 370 | 453 | 84 | 1.4E-32 | ||
| Phobius | 466 | 484 | 19 | - | – | |
| Phobius | 485 | 485 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi1g1v0312600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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