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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0312700 |
| Transcript ID | LotjaGi1g1v0312700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein; TAIR: AT4G39470.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LS48|SG1_ARATH protein SLOW GREEN 1, chloroplastic; TrEMBL-Plants: tr|A0A151TQL2|A0A151TQL2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0312700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75690800..75697584) extracted from Lotus japonicus Gifu genome v1.2.
GAGAGCATGAAGCACCTTTCCGTCATGAACGCCGACGACCACCACCGGTGACATCTTTCCGGCGAGGACCTCAAGATGGC TTCAACCTCAACCACCACCTTCCCCATCTCCTACTCACAATCCCAGTCAAAGTTCCTCAATCCACTTCGACAGCCACGGA TTCAATTTCACAGCCGCAACAAACACACATCAATTTCGCTTCAACCCGCCACAATCCGCCCCACCCTTCTGCCACTATGC ACTTTTTCCGGCATACCCACTTCACGTTTCCGACCTCAAACGAGTTTACCCAAGTTCCTTTCACAAAAGATTGCATCTTT ACTAATTGGGTCGTTCATCTTCTTCATGGGTTGTTGTCTCAGCAAAAACACTGCTTTTGCAGTAGCAGCAGTGCCTTCGG TAATGGAGGAGAAGATGGAAGCCATGGAAGGGAAAAGCGAGGAGGAGGAAATGTACGAGAAGCTTTTGGAGAAGGATTCC AGAAACGTTGAGGCTCTCAAGGTGATTGTGTATGGGAAAATCAGGAGAGGGAAGTGTAATGAGGCAGTGAAGTTTGTGGA GAGTTTGATTGATTTGGAGCCGAATGAGGTTGAGTGGAAGCTTTTGCTGGCACTCTGTTATGAGACAATGGGGGAGTTGA GTAAGGCTAAAACTTTGTTCAGGGAAATCCTGGAGAAAATGCCTCTTCAAGTCAGAGCTTTGCATGTAAGGTTTCTCAGC TTCTCTCTCATTCAGTTTTTTAATGTTGCTTAAAGTTTGAATTTTGGTTCTGATTGAAAATGTGGGTGGATAGATAGGAA TTCTCTGCTTTGTTAGCCATATGCTCAAAATTGTTATTTGACCTTGTTGCTAGTTATCATGGTTATTAAGAGTGCACAAC ATAGACATTGTTCTGCTATGAAAAAGAAAAATCCTTTGTTATCCTGTTATCCTTTATGCAAATATGATTGTGATTGCACA TTGATATGCTAGTTCATTTTGTATCTGCACTGAGTTCTTTAATTTTTTTTTCATGGTGCTTGTTCACTCGGAGGATTGAA AATCGATGTGCGGCTTGAAATAGTTCAAAAGCATTCCTAGGATGCATATATTGTCATGAACAATTGAAGCTGTGCTTGGG TAGTGAATTTATATCAACAACCAAAAGCTTTAGTATGTTGAGAATAGGGTTTCTCTGATTTTAAATTTAGAATGGAAGGA ATGATTTTGGGCTGAATTAAAATTAATGTAAGTTACATTTACATGTCTAGGGAACTAACGAGATCCTAAGTTGCATATTG CACTAAAATCAGTCTAAGTAGACTGAAATTAAGAATATGTGGTGATGTATTCTAAACTATACATTGTAATTCTTAAAATA CTCTCTAAACCGAAATCAGTTATTGGAGAGTAAGTATAAATCTTCACTTTCATTCCTCTTATTTATTTGAAATCGAAACA ACAAATGAGAAAGTTATTACCAACTTCTTCATTTGCTTCCTCTCCCCAATTTTTCCCAAACAATGGCAAGCATTAAGGGT TAAACAGGCTTCTGAGAATTAACCAATATGCAGACAATATACATTTACTGTTTCTTAGGAGGTATATGATAGGACACTTG TATTTTATTAGAAAGTGTAGCGACTCGCTACACTTTCTAATACTAGCGACCAATTTCCCAATTATAGCTACAATTCTGCT GATCTTCAAGGGTCTGCATGCCTCCCTTCCAAAGGTTCTATTTCCCTCACAAATTGACTTGCTAATCTTCCTCTCACTCC CTCTTGTTGTTTATATACATCATAACCTACTTCTTTGACTGCCTCATCTTAATTATTTCCTACTAGCTAACTATGTAATT CAGGGTCAGGTACTACTAACAAGATACTGAGTGCTGTTAGCATATTGAGTGTTTTTGTAATGTCATGATTGGGTAATGTT ATGGGCTTATGTGTTTAACCATGTTATTAAATTATTGTCATTTTTCTTATTACATAAAGTATGCTGGTATTTTTATTACT ATTTCTGTGAAAATATATTAATCATTGCCCTATAAGCGTTGCTTCAACTGATTGTTTCTGCCTTGAAGGTTCATAGAGTT TTTGATTGGTCTTATTTCTGTACCATAAATAGTTCTAATATGCTGACTTCTTATCTTTTTTTGGGGATGGAGTTTTTTTT TTTTTTTACTTTGGCCTTGTCATTTGTCATATGCATTCTTAGGTAGGATTTGATCAGATTAGCTGAAAAATATTTCTTCA TTCCGATATATGTTTTGCTTATTTTAGATTCAGCTTCAAAGGTGGCTTGTTAGATGCTTCATTGAAAGCATTTTTGTGGG TGATATATTAAAAAAATGTGAGTATGATATTCATTCATAATGTATTACAATTCCAGACCATGAAATCAAGTCACCATGAC ACTTCGTTTGTTTGTTTTGCTTATTCATTTATAATTGAGGTGAGTAATCATTTACAGGGTCTGGCTATGGTGATGCACAA AAACCATGAGGGTCCTGCTGTATTTGAAATGCTGAATAAGGCTCGAGAGTTAGCTTCTAATGAAAACAGAGTTACAGAGG AGAGAAATATAAGGATCTTAATTGCACAAATGCTTGTTGTACAGGTGAACTGTTGATCCATCAGCTTAGGTTGGGACTGT TTTAATTTGATCTAGTGTTTTAATGATTATAAGCTACCAATTCAAGATAAAGCATATACAATATGTTTTAGGAGTAATAA TCTAACATGCATAACATCTGTGTGTTTTGCAGGGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGATTTGATTGATGAA AATTATCGAGATTTTCGGCCTTATTTTTGCCAGGTGGGTTTGTTTGTAAGTCAAGCTCAAGTGTATGCGACTATATATAC ATAAGGGGTATATCTAGTGAAAGTGTGAAATAAACTAATATTGACCATATATTGTTCATCTCACTCTCACAGTGAACAAC TCTTCTCACTTGTTCTACTCCCTGTGTGTATATAAGATGCCTAAGATTATGGTAATAATGATAGCAAAATGAAATGATTT TGTTTTCATCAGTTTTATGAGTTGAGCTTATACCAGTTAATCCTTGAAACCCTATCCAATAAAGAAGGACAGGTTATGCT TCCTAAAGGCTGTTCATGTGACAAAACTACCGTCTTATTATGATATTGCCAAAATTTATATTCGTATAGCTTTCTAACAT CAAAATTGGTGTACATTTTATGAGCTCATTTACATGTTAATCCATTAAACCATAAATAAGCTGCAAAGCTAAATGACTTG GTTGTTTAATTCTGCAAGCTGGCAGGACTAATGAATCATTGACTTGATCCCCAATTGGTTCAGCTGAATCTTTTGATCTT TGTCAAATCCTGGGGAACCAAGTTAAAAAATGAGAAAATTGGTCGAATTTGGTAAATGGACCAGTTCACTTAAACAATAA ATTTTGTAAAAAAATTAAAGGCTTTAAAATTTAAATTGTTTTATTGGCTTGCTTATGTAAATTATTTTAAAAAAAAATCT TTTCGCGCAGCATCATAGACTTATTTTAATTAAATACATTTTTTCTTGTTTGGTTTGATGTCTTCTACTTGGAGTCTTGG ACTGACAGTCAAGTGTCAACAGCCACTCAGTTGGTTTGGGTCACACAACTCTACGTAGGTAGTAGTTAGCTTTGTAAAAC CTCATAGAAAAACCATGGGATAGATTGAACACCATGAATGTAACCTTTATGATTTTATTTTAAATTTATATTTCCAAAGT TCCAGGTGTAAAGAGAAACAAGCCCTGTAGAACAGATAAGATATACAACAAGGACTGTCTCCATTAACTTGTCTTTTCCT CTCATTTCAGGGTTGCTCTTGTTCAGAAATATGGGTTGGTTGCATCACTCAATTCTTATGTTGTGTCTAGTGAAAAATGG AGCTAATCATCTTTGAACAGAATTCTTTGACTTAAGAATTTCCCCCCTCATTATCAGACACCATTGTTTTGGAGAGCACT AACATAAGAGTGTTATTGATGCACTGGACTTTAAAAATGTTTGCTTTCAGTTGTCAGGTGTCAGACTTTTATTTCTGTGT TACACCCTTTCTGGCTCTATAAAAATATTTTGGTTTAGAAAATTTTAGGATGAGGGGATGGTGCCCCAATTAAAGGCAAT GTTAGCCTCCATGTTTAAATTGCATTTACAATCATAATAAAATTTATCACATCCAAAGGGGTAAGTGGAGATTCAAACCT GCAACTTTACAGGTGTGAAACCCTGTCTTTCTACATTCGACCACCCTCTTAAGGTTTATGGCTTTATTCATTTATGATTA TAATATCATCATTTTTCTAACATAATTCTGTGAGATAATTGACCAAAGGGCTACTTTCTGTGTTATGGAATTTAAGCAGG AAGAGATGTAATGATTTTGGCCGACTCCATTCATCAAATTACTAAATTGATTTTTGTTAAAAAAATTGCAGGGAATAATA TACAGTCTCCTGGATCAAAAGGAGGAAGCAGCACGGCAGTTTGAAATATACCAAACTCTTGTGCCTGAAGAGTTTCCTCA GAGGGGATTTCTTGATGATATTGCCTTAACAGCACAAAGAACATCCCGAGAACAGTTTCAAAAGGAATTGGGAGATCAAT TTTCTTACAGGAAGTAAGAATGAATATATATATATATATATATATATAGGGAGCATATCAGGTGAGATAAGTGGTTTATG GTGAGAGGTGAGAGCATTAAATCACACCCATTGAATTTAAATAGACTGTACAGATTCAACTCTCTCATTAAAAGCTCACG TGACTCTTGTTTTTATCGCACAACAGCTTTAATTTTATCTTTTGCTTTTTTAGTTTTTAACTTTTTATACACAGAAGCCG CTTCCAGCCCAAAAGTTATCAGAAAAAAAAACTTCCATGAAAGTCAATTTCACAAATCTCCTCCATGGATCTAGTAGATA ATTTATTCCCCTTATAATTTTCGTATTAGAGTCACAAATCTCCTCTAATGACATGGTGGGTGGCAAAAATTGTCTGATCA CCATTTTTTCCGGTAAGACCTCCACCGGAGTGAAATTAGGAAAGCTGCAAACCTCCACCCATCCTGAGAAACTCTCTGAT CACCATTTTTTCAGGCAAAACCGCCACCGAAACTCCGTGGACTAGCTCTAAGATTGAACCACAAACACCCAATCCACTAA CCACCACCGCGACCAGCTCCGATTCATTCCCTCCACCGCTAAAAGCCTCCGATCTGCCGCACCCACTCACTCCGGGAACC ATCTGAGCAACCTCATGCTGTAGATCGGCGGGTCAACCGTCAACAACAGCCACAACATGTTGTTCGTGAAATCTGTGAGT TTGTCATGGTGGTTCCGACCTCCCGGATGACGGTGGCGCTGTTCCAGATCTCGTCATCGGTGATTTTGATGAGGAAACAG TCACAGGGGAGCAAGGATAGGAATAGGGAAGGTGGGACTGAGGGAGAATGAAGATGGGTCCGTTGGAGGGGGAGAATAAG GAAGAAGATGAAAACTGGTTGAGAAAAAAGGAATGAACAGAAAAGAAGTCACGTGCAATTTTAAAAGTGAGATCAGATCT GGACCATTTATTTTGATCGAATGGATAGTAATTAATGCTCTCATCTCTCACTATAAACCACTCCTCTCACCTGATATGCT CCCTATATATATATATATATATATATATATATATATATGATGTTTTCTTCTTATCTGTCATGGCAATAATTAGTAATGCA ATGCAGTAGCAGACTCTTGTGAAGGCCTAAAGTTAGACCTTTTAGGGTTCCTTTGGTGGGCTGAATAAGGAGATAGGATA GAATAACTTAATCATTTCGTACTGTAATGTTGCGCCCGCAAGATAGGATAACGAAATCTAGTTCATTATCCTATCCTGTC CATCATCATAGAGTGTATAGCATAATATTTCTTTTCGTCTTGTAGTGCATGATTTGGAGCAATAGGATCTGCTTGTTTTG CTCTATTTAAATCTGTATATCATTCTTTAAGTATGGTGCTTTATCTTTACAACCTTATTGACTTTAGGATTTGGGTCCAT ATGTGGTACAAAACTCATTATTATTTTGTATCTCTTATTAATAGAGTTCTCTCTTCTTAAAAACAAAGAATGTTCACATA CTTAGTTAAGTCTGTGCTTCCATCGAGACATGTTCATGCCTCTCTTGTTTGACACATAAAATATTTGTTAGGTCGTGATT GGCAGGTGGTCCTGCACCACACTTTGCGGGGAGGTAATGCCTGTGCAGATTTCTTGGCAAAGCATGGAGCAGAGTAGGTT GATACCCTGGTGCCCTGGTGGTTATTGACCATCCTTTGGATGGGATGAGCTTGCTGCTGTTGGTTGATGCTATGGGCTTC TCTTCTGTGAGGCCTTAGTCCGGGGTTTTGCCTCGTCTTTCTTTTTCTTTATGAGCTGTACCAAAAAAGTTCATGTGTTT ATCTTTTCTTTTTTTGTCAATATTCACGTGTTAATATAATAATTTAAGCTAAGAAAATTGGTCCAAATTAACCTCTGAGA TCCCAATTGCCTCAAATGCCAATTCTGTTGTTGTTCTTCACACTCATTCATCCTTAAAATTGAATAGCACCAATTTCCAT GTCTGGCATGTTCAATTCAATGCCCTCCTGGTGGGATATGATCTCATAAGTTATGTTGATGACACTAAGGTCATGCACGC CATAACTGATGCATCCTATACTCACTGGAAAAGACAGGATCAACTGATCCTCCATGCCATCATAT
CDS sequence (LotjaGi1g1v0312700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAACCTCAACCACCACCTTCCCCATCTCCTACTCACAATCCCAGTCAAAGTTCCTCAATCCACTTCGACAGCC ACGGATTCAATTTCACAGCCGCAACAAACACACATCAATTTCGCTTCAACCCGCCACAATCCGCCCCACCCTTCTGCCAC TATGCACTTTTTCCGGCATACCCACTTCACGTTTCCGACCTCAAACGAGTTTACCCAAGTTCCTTTCACAAAAGATTGCA TCTTTACTAATTGGGTCGTTCATCTTCTTCATGGGTTGTTGTCTCAGCAAAAACACTGCTTTTGCAGTAGCAGCAGTGCC TTCGGTAATGGAGGAGAAGATGGAAGCCATGGAAGGGAAAAGCGAGGAGGAGGAAATGTACGAGAAGCTTTTGGAGAAGG ATTCCAGAAACGTTGAGGCTCTCAAGGTGATTGTGTATGGGAAAATCAGGAGAGGGAAGTGTAATGAGGCAGTGAAGTTT GTGGAGAGTTTGATTGATTTGGAGCCGAATGAGGTTGAGTGGAAGCTTTTGCTGGCACTCTGTTATGAGACAATGGGGGA GTTGAGTAAGGCTAAAACTTTGTTCAGGGAAATCCTGGAGAAAATGCCTCTTCAAGTCAGAGCTTTGCATGGTCTGGCTA TGGTGATGCACAAAAACCATGAGGGTCCTGCTGTATTTGAAATGCTGAATAAGGCTCGAGAGTTAGCTTCTAATGAAAAC AGAGTTACAGAGGAGAGAAATATAAGGATCTTAATTGCACAAATGCTTGTTGTACAGGGTAATTTGGAGGAGGGCTTAAA AAGATTTCAAGATTTGATTGATGAAAATTATCGAGATTTTCGGCCTTATTTTTGCCAGGGAATAATATACAGTCTCCTGG ATCAAAAGGAGGAAGCAGCACGGCAGTTTGAAATATACCAAACTCTTGTGCCTGAAGAGTTTCCTCAGAGGGGATTTCTT GATGATATTGCCTTAACAGCACAAAGAACATCCCGAGAACAGTTTCAAAAGGAATTGGGAGATCAATTTTCTTACAGGAA GTGGTCCTGCACCACACTTTGCGGGGAGGTAATGCCTGTGCAGATTTCTTGGCAAAGCATGGAGCAGAGTAGGTTGATAC CCTGGTGCCCTGGTGGTTATTGA
Protein sequence (LotjaGi1g1v0312700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTSTTTFPISYSQSQSKFLNPLRQPRIQFHSRNKHTSISLQPATIRPTLLPLCTFSGIPTSRFRPQTSLPKFLSQKIA SLLIGSFIFFMGCCLSKNTAFAVAAVPSVMEEKMEAMEGKSEEEEMYEKLLEKDSRNVEALKVIVYGKIRRGKCNEAVKF VESLIDLEPNEVEWKLLLALCYETMGELSKAKTLFREILEKMPLQVRALHGLAMVMHKNHEGPAVFEMLNKARELASNEN RVTEERNIRILIAQMLVVQGNLEEGLKRFQDLIDENYRDFRPYFCQGIIYSLLDQKEEAARQFEIYQTLVPEEFPQRGFL DDIALTAQRTSREQFQKELGDQFSYRKWSCTTLCGEVMPVQISWQSMEQSRLIPWCPGGY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 347 | 322 | 1.8E-121 | – | |
| PANTHER | 26 | 347 | 322 | 1.8E-121 | – | |
| Gene3D | 91 | 317 | 227 | 6.6E-23 | ||
| SUPERFAMILY | 124 | 312 | 189 | 4.93E-21 | ||
| ProSiteProfiles | 125 | 313 | 189 | 17.918 | ||
| Pfam | 150 | 209 | 60 | 1.5E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0312700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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