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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0312700 |
| Transcript ID | LotjaGi1g1v0312700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat-like superfamily protein isoform 1; TAIR: AT4G39470.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LS48|SG1_ARATH protein SLOW GREEN 1, chloroplastic; TrEMBL-Plants: tr|I3SPH7|I3SPH7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0312700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75690830..75697635) extracted from Lotus japonicus Gifu genome v1.2.
CGGGAAGCCTAAGGGCTGGGGTGTTAAACCCAATTCCTGTGACAAGCTAAGGAGAGCATGAAGCACCTTTCCGTCATGAA CGCCGACGACCACCACCGGTGACATCTTTCCGGCGAGGACCTCAAGATGGCTTCAACCTCAACCACCACCTTCCCCATCT CCTACTCACAATCCCAGTCAAAGTTCCTCAATCCACTTCGACAGCCACGGATTCAATTTCACAGCCGCAACAAACACACA TCAATTTCGCTTCAACCCGCCACAATCCGCCCCACCCTTCTGCCACTATGCACTTTTTCCGGCATACCCACTTCACGTTT CCGACCTCAAACGAGTTTACCCAAGTTCCTTTCACAAAAGATTGCATCTTTACTAATTGGGTCGTTCATCTTCTTCATGG GTTGTTGTCTCAGCAAAAACACTGCTTTTGCAGTAGCAGCAGTGCCTTCGGTAATGGAGGAGAAGATGGAAGCCATGGAA GGGAAAAGCGAGGAGGAGGAAATGTACGAGAAGCTTTTGGAGAAGGATTCCAGAAACGTTGAGGCTCTCAAGGTGATTGT GTATGGGAAAATCAGGAGAGGGAAGTGTAATGAGGCAGTGAAGTTTGTGGAGAGTTTGATTGATTTGGAGCCGAATGAGG TTGAGTGGAAGCTTTTGCTGGCACTCTGTTATGAGACAATGGGGGAGTTGAGTAAGGCTAAAACTTTGTTCAGGGAAATC CTGGAGAAAATGCCTCTTCAAGTCAGAGCTTTGCATGTAAGGTTTCTCAGCTTCTCTCTCATTCAGTTTTTTAATGTTGC TTAAAGTTTGAATTTTGGTTCTGATTGAAAATGTGGGTGGATAGATAGGAATTCTCTGCTTTGTTAGCCATATGCTCAAA ATTGTTATTTGACCTTGTTGCTAGTTATCATGGTTATTAAGAGTGCACAACATAGACATTGTTCTGCTATGAAAAAGAAA AATCCTTTGTTATCCTGTTATCCTTTATGCAAATATGATTGTGATTGCACATTGATATGCTAGTTCATTTTGTATCTGCA CTGAGTTCTTTAATTTTTTTTTCATGGTGCTTGTTCACTCGGAGGATTGAAAATCGATGTGCGGCTTGAAATAGTTCAAA AGCATTCCTAGGATGCATATATTGTCATGAACAATTGAAGCTGTGCTTGGGTAGTGAATTTATATCAACAACCAAAAGCT TTAGTATGTTGAGAATAGGGTTTCTCTGATTTTAAATTTAGAATGGAAGGAATGATTTTGGGCTGAATTAAAATTAATGT AAGTTACATTTACATGTCTAGGGAACTAACGAGATCCTAAGTTGCATATTGCACTAAAATCAGTCTAAGTAGACTGAAAT TAAGAATATGTGGTGATGTATTCTAAACTATACATTGTAATTCTTAAAATACTCTCTAAACCGAAATCAGTTATTGGAGA GTAAGTATAAATCTTCACTTTCATTCCTCTTATTTATTTGAAATCGAAACAACAAATGAGAAAGTTATTACCAACTTCTT CATTTGCTTCCTCTCCCCAATTTTTCCCAAACAATGGCAAGCATTAAGGGTTAAACAGGCTTCTGAGAATTAACCAATAT GCAGACAATATACATTTACTGTTTCTTAGGAGGTATATGATAGGACACTTGTATTTTATTAGAAAGTGTAGCGACTCGCT ACACTTTCTAATACTAGCGACCAATTTCCCAATTATAGCTACAATTCTGCTGATCTTCAAGGGTCTGCATGCCTCCCTTC CAAAGGTTCTATTTCCCTCACAAATTGACTTGCTAATCTTCCTCTCACTCCCTCTTGTTGTTTATATACATCATAACCTA CTTCTTTGACTGCCTCATCTTAATTATTTCCTACTAGCTAACTATGTAATTCAGGGTCAGGTACTACTAACAAGATACTG AGTGCTGTTAGCATATTGAGTGTTTTTGTAATGTCATGATTGGGTAATGTTATGGGCTTATGTGTTTAACCATGTTATTA AATTATTGTCATTTTTCTTATTACATAAAGTATGCTGGTATTTTTATTACTATTTCTGTGAAAATATATTAATCATTGCC CTATAAGCGTTGCTTCAACTGATTGTTTCTGCCTTGAAGGTTCATAGAGTTTTTGATTGGTCTTATTTCTGTACCATAAA TAGTTCTAATATGCTGACTTCTTATCTTTTTTTGGGGATGGAGTTTTTTTTTTTTTTTACTTTGGCCTTGTCATTTGTCA TATGCATTCTTAGGTAGGATTTGATCAGATTAGCTGAAAAATATTTCTTCATTCCGATATATGTTTTGCTTATTTTAGAT TCAGCTTCAAAGGTGGCTTGTTAGATGCTTCATTGAAAGCATTTTTGTGGGTGATATATTAAAAAAATGTGAGTATGATA TTCATTCATAATGTATTACAATTCCAGACCATGAAATCAAGTCACCATGACACTTCGTTTGTTTGTTTTGCTTATTCATT TATAATTGAGGTGAGTAATCATTTACAGGGTCTGGCTATGGTGATGCACAAAAACCATGAGGGTCCTGCTGTATTTGAAA TGCTGAATAAGGCTCGAGAGTTAGCTTCTAATGAAAACAGAGTTACAGAGGAGAGAAATATAAGGATCTTAATTGCACAA ATGCTTGTTGTACAGGTGAACTGTTGATCCATCAGCTTAGGTTGGGACTGTTTTAATTTGATCTAGTGTTTTAATGATTA TAAGCTACCAATTCAAGATAAAGCATATACAATATGTTTTAGGAGTAATAATCTAACATGCATAACATCTGTGTGTTTTG CAGGGTAATTTGGAGGAGGGCTTAAAAAGATTTCAAGATTTGATTGATGAAAATTATCGAGATTTTCGGCCTTATTTTTG CCAGGTGGGTTTGTTTGTAAGTCAAGCTCAAGTGTATGCGACTATATATACATAAGGGGTATATCTAGTGAAAGTGTGAA ATAAACTAATATTGACCATATATTGTTCATCTCACTCTCACAGTGAACAACTCTTCTCACTTGTTCTACTCCCTGTGTGT ATATAAGATGCCTAAGATTATGGTAATAATGATAGCAAAATGAAATGATTTTGTTTTCATCAGTTTTATGAGTTGAGCTT ATACCAGTTAATCCTTGAAACCCTATCCAATAAAGAAGGACAGGTTATGCTTCCTAAAGGCTGTTCATGTGACAAAACTA CCGTCTTATTATGATATTGCCAAAATTTATATTCGTATAGCTTTCTAACATCAAAATTGGTGTACATTTTATGAGCTCAT TTACATGTTAATCCATTAAACCATAAATAAGCTGCAAAGCTAAATGACTTGGTTGTTTAATTCTGCAAGCTGGCAGGACT AATGAATCATTGACTTGATCCCCAATTGGTTCAGCTGAATCTTTTGATCTTTGTCAAATCCTGGGGAACCAAGTTAAAAA ATGAGAAAATTGGTCGAATTTGGTAAATGGACCAGTTCACTTAAACAATAAATTTTGTAAAAAAATTAAAGGCTTTAAAA TTTAAATTGTTTTATTGGCTTGCTTATGTAAATTATTTTAAAAAAAAATCTTTTCGCGCAGCATCATAGACTTATTTTAA TTAAATACATTTTTTCTTGTTTGGTTTGATGTCTTCTACTTGGAGTCTTGGACTGACAGTCAAGTGTCAACAGCCACTCA GTTGGTTTGGGTCACACAACTCTACGTAGGTAGTAGTTAGCTTTGTAAAACCTCATAGAAAAACCATGGGATAGATTGAA CACCATGAATGTAACCTTTATGATTTTATTTTAAATTTATATTTCCAAAGTTCCAGGTGTAAAGAGAAACAAGCCCTGTA GAACAGATAAGATATACAACAAGGACTGTCTCCATTAACTTGTCTTTTCCTCTCATTTCAGGGTTGCTCTTGTTCAGAAA TATGGGTTGGTTGCATCACTCAATTCTTATGTTGTGTCTAGTGAAAAATGGAGCTAATCATCTTTGAACAGAATTCTTTG ACTTAAGAATTTCCCCCCTCATTATCAGACACCATTGTTTTGGAGAGCACTAACATAAGAGTGTTATTGATGCACTGGAC TTTAAAAATGTTTGCTTTCAGTTGTCAGGTGTCAGACTTTTATTTCTGTGTTACACCCTTTCTGGCTCTATAAAAATATT TTGGTTTAGAAAATTTTAGGATGAGGGGATGGTGCCCCAATTAAAGGCAATGTTAGCCTCCATGTTTAAATTGCATTTAC AATCATAATAAAATTTATCACATCCAAAGGGGTAAGTGGAGATTCAAACCTGCAACTTTACAGGTGTGAAACCCTGTCTT TCTACATTCGACCACCCTCTTAAGGTTTATGGCTTTATTCATTTATGATTATAATATCATCATTTTTCTAACATAATTCT GTGAGATAATTGACCAAAGGGCTACTTTCTGTGTTATGGAATTTAAGCAGGAAGAGATGTAATGATTTTGGCCGACTCCA TTCATCAAATTACTAAATTGATTTTTGTTAAAAAAATTGCAGGGAATAATATACAGTCTCCTGGATCAAAAGGAGGAAGC AGCACGGCAGTTTGAAATATACCAAACTCTTGTGCCTGAAGAGTTTCCTCAGAGGGGATTTCTTGATGATATTGCCTTAA CAGCACAAAGAACATCCCGAGAACAGTTTCAAAAGGAATTGGGAGATCAATTTTCTTACAGGAAGTAAGAATGAATATAT ATATATATATATATATATAGGGAGCATATCAGGTGAGATAAGTGGTTTATGGTGAGAGGTGAGAGCATTAAATCACACCC ATTGAATTTAAATAGACTGTACAGATTCAACTCTCTCATTAAAAGCTCACGTGACTCTTGTTTTTATCGCACAACAGCTT TAATTTTATCTTTTGCTTTTTTAGTTTTTAACTTTTTATACACAGAAGCCGCTTCCAGCCCAAAAGTTATCAGAAAAAAA AACTTCCATGAAAGTCAATTTCACAAATCTCCTCCATGGATCTAGTAGATAATTTATTCCCCTTATAATTTTCGTATTAG AGTCACAAATCTCCTCTAATGACATGGTGGGTGGCAAAAATTGTCTGATCACCATTTTTTCCGGTAAGACCTCCACCGGA GTGAAATTAGGAAAGCTGCAAACCTCCACCCATCCTGAGAAACTCTCTGATCACCATTTTTTCAGGCAAAACCGCCACCG AAACTCCGTGGACTAGCTCTAAGATTGAACCACAAACACCCAATCCACTAACCACCACCGCGACCAGCTCCGATTCATTC CCTCCACCGCTAAAAGCCTCCGATCTGCCGCACCCACTCACTCCGGGAACCATCTGAGCAACCTCATGCTGTAGATCGGC GGGTCAACCGTCAACAACAGCCACAACATGTTGTTCGTGAAATCTGTGAGTTTGTCATGGTGGTTCCGACCTCCCGGATG ACGGTGGCGCTGTTCCAGATCTCGTCATCGGTGATTTTGATGAGGAAACAGTCACAGGGGAGCAAGGATAGGAATAGGGA AGGTGGGACTGAGGGAGAATGAAGATGGGTCCGTTGGAGGGGGAGAATAAGGAAGAAGATGAAAACTGGTTGAGAAAAAA GGAATGAACAGAAAAGAAGTCACGTGCAATTTTAAAAGTGAGATCAGATCTGGACCATTTATTTTGATCGAATGGATAGT AATTAATGCTCTCATCTCTCACTATAAACCACTCCTCTCACCTGATATGCTCCCTATATATATATATATATATATATATA TATATATATGATGTTTTCTTCTTATCTGTCATGGCAATAATTAGTAATGCAATGCAGTAGCAGACTCTTGTGAAGGCCTA AAGTTAGACCTTTTAGGGTTCCTTTGGTGGGCTGAATAAGGAGATAGGATAGAATAACTTAATCATTTCGTACTGTAATG TTGCGCCCGCAAGATAGGATAACGAAATCTAGTTCATTATCCTATCCTGTCCATCATCATAGAGTGTATAGCATAATATT TCTTTTCGTCTTGTAGTGCATGATTTGGAGCAATAGGATCTGCTTGTTTTGCTCTATTTAAATCTGTATATCATTCTTTA AGTATGGTGCTTTATCTTTACAACCTTATTGACTTTAGGATTTGGGTCCATATGTGGTACAAAACTCATTATTATTTTGT ATCTCTTATTAATAGAGTTCTCTCTTCTTAAAAACAAAGAATGTTCACATACTTAGTTAAGTCTGTGCTTCCATCGAGAC ATGTTCATGCCTCTCTTGTTTGACACATAAAATATTTGTTAGGTCGTGATTGGCAGGTGGTCCTGCACCACACTTTGCGG GGAGGTAATGCCTGTGCAGATTTCTTGGCAAAGCATGGAGCAGAGTAGGTTGATACCCTGGTGCCCTGGTGGTTATTGAC CATCCTTTGGATGGGATGAGCTTGCTGCTGTTGGTTGATGCTATGGGCTTCTCTTCTGTGAGGCCTTAGTCCGGGGTTTT GCCTCGTCTTTCTTTTTCTTTATGAGCTGTACCAAAAAAGTTCATGTGTTTATCTTTTCTTTTTTTGTCAATATTCACGT GTTAATATAATAATTTAAGCTAAGAAAATTGGTCCAAATTAACCTCTGAGATCCCAATTGCCTCAAATGCCAATTCTGTT GTTGTTCTTCACACTCATTCATCCTTAAAATTGAATAGCACCAATTTCCATGTCTGGCATGTTCAATTCAATGCCCTCCT GGTGGGATATGATCTCATAAGTTATGTTGATGACACTAAGGTCATGCACGCCATAACTGATGCATCCTATACTCACTGGA AAAGAC
CDS sequence (LotjaGi1g1v0312700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAACCTCAACCACCACCTTCCCCATCTCCTACTCACAATCCCAGTCAAAGTTCCTCAATCCACTTCGACAGCC ACGGATTCAATTTCACAGCCGCAACAAACACACATCAATTTCGCTTCAACCCGCCACAATCCGCCCCACCCTTCTGCCAC TATGCACTTTTTCCGGCATACCCACTTCACGTTTCCGACCTCAAACGAGTTTACCCAAGTTCCTTTCACAAAAGATTGCA TCTTTACTAATTGGGTCGTTCATCTTCTTCATGGGTTGTTGTCTCAGCAAAAACACTGCTTTTGCAGTAGCAGCAGTGCC TTCGGTAATGGAGGAGAAGATGGAAGCCATGGAAGGGAAAAGCGAGGAGGAGGAAATGTACGAGAAGCTTTTGGAGAAGG ATTCCAGAAACGTTGAGGCTCTCAAGGTGATTGTGTATGGGAAAATCAGGAGAGGGAAGTGTAATGAGGCAGTGAAGTTT GTGGAGAGTTTGATTGATTTGGAGCCGAATGAGGTTGAGTGGAAGCTTTTGCTGGCACTCTGTTATGAGACAATGGGGGA GTTGAGTAAGGCTAAAACTTTGTTCAGGGAAATCCTGGAGAAAATGCCTCTTCAAGTCAGAGCTTTGCATGGTCTGGCTA TGGTGATGCACAAAAACCATGAGGGTCCTGCTGTATTTGAAATGCTGAATAAGGCTCGAGAGTTAGCTTCTAATGAAAAC AGAGTTACAGAGGAGAGAAATATAAGGATCTTAATTGCACAAATGCTTGTTGTACAGGGTAATTTGGAGGAGGGCTTAAA AAGATTTCAAGATTTGATTGATGAAAATTATCGAGATTTTCGGCCTTATTTTTGCCAGGGTTGCTCTTGTTCAGAAATAT GGGTTGGTTGCATCACTCAATTCTTATGTTGTGTCTAG
Protein sequence (LotjaGi1g1v0312700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTSTTTFPISYSQSQSKFLNPLRQPRIQFHSRNKHTSISLQPATIRPTLLPLCTFSGIPTSRFRPQTSLPKFLSQKIA SLLIGSFIFFMGCCLSKNTAFAVAAVPSVMEEKMEAMEGKSEEEEMYEKLLEKDSRNVEALKVIVYGKIRRGKCNEAVKF VESLIDLEPNEVEWKLLLALCYETMGELSKAKTLFREILEKMPLQVRALHGLAMVMHKNHEGPAVFEMLNKARELASNEN RVTEERNIRILIAQMLVVQGNLEEGLKRFQDLIDENYRDFRPYFCQGCSCSEIWVGCITQFLCCV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 287 | 262 | 5.4E-88 | – | |
| PANTHER | 26 | 287 | 262 | 5.4E-88 | – | |
| Gene3D | 112 | 290 | 179 | 2.3E-18 | ||
| SUPERFAMILY | 124 | 290 | 167 | 7.97E-17 | ||
| ProSiteProfiles | 125 | 279 | 155 | 14.414 | ||
| Pfam | 150 | 209 | 60 | 1.1E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0312700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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