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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0314000 |
| Transcript ID | LotjaGi1g1v0314000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G61890.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114; TrEMBL-Plants: tr|A0A0U1UPU3|A0A0U1UPU3_LOTCO AP2/ERF; Found in the gene: LotjaGi1g1v0314000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75892215..75895011) extracted from Lotus japonicus Gifu genome v1.2.
CCTTTATTGTTTGGTTTTCATGTCGGTTCCTACCTACACCAATTCTCATGGCCGACTAGCTCTCACAAGTTGCCAACCGC CAAGGATGTTCTCTCCACACACATCACCAGCGCCGGCAACCCTGCTTTCACACCACATTATTTCTTTTTTAACTTTTGCT TCCCCAAATTGTTGGTATCAATTCTCATATTCATCTACTTTACACCTTTATCCTACACAACAAAATAGAATTCAGAATCT AAGGAAAAAGAAACTAGCGAAAACGAATTTTTCAAACCGCTTATAATTCAAATATTAATTATTATTGTTACTAGCTACTT TGTTTCGTGCAAAAGAAGTTCTCCACTTCTTCATTTATTCACCGACTGACTCTTCAATGGCGGCTGCGAACAATCCATTT GAACCTTTCCATCTTTAGCATATATATATGAACAATTTATGAGGTTATTGGAGATGCTTCTTGAAGGGTACTTATTTGCA TGCAGCAAAAAGCAGAGAAGAGCTAATTGAACCAGCTTTGAATTGATTGCATTTACATTTTGTTAAAGGTGGCGAATTCT ACAGACAAGGTTGACCGCCACAAAGAAGAGGCACAAATCCCTTCTGCATTGTCAACGCAGATGATGTTCCCGGGTTTGAA CAGGGAGAGGGAGATGTCTGCCATGGTTTCAGCTTTGACCCATGTTGTCTCTGGAGATGTTCCAAGCGGTGATTACACGA TTCCTCATGATTTTGGAGGAGGAAGTGTTAGACAAAACTTGCCTTCTTATTCTTCAGCTGCACCCTCTTTACCTTCTTCA TCTGATTATGTTGCTAGTTCTTCTCTCAAGAGGAGTAGGGAAGATGATAGATCATCCTTCATTGAATTCTCACATGGTGC TTCTTCCCCGGCTTTGCCAGCATCAACATGTAAGCACTAAACCCAAATCTCTTTAACTTTTCATTCTGGGAATTGCTTTA TGATTGAAATATATTATGAAACAGCAACGGTAATTTCTTTTTTCATTGATTGCATTGTGTCATAAATTACATCACAACCA TTCAAGGTGGGTCTAATAGTCCATCAATTTTTTTCTTAACCAAGGTTTCATGCGACCTATGTGTAAAAACACTAAACTGT AGGAGATGACCAATGAATTTTCTCCACTCACAATAGTTATAAATTGAACCCAACTATTTACTTAAGAGCAGACTATTGAA TCACTACATTAATTCGTTGTGCATTATCTTTTGATAGCAAAGATTAACTTATTTTTTTTGGTAGTCAACAAGCAACTTCA TGAAATTTCTTCCCATTAATTTTAAGTAGAAGAATTCCCAAAATGTACTAAACATATTATATTATTTGATGTTGAAAATG AAGTACATAGCTAAAATGTTACTATCAATAAATAAACATTATTGATAAATAGTTGAACTTTTTATACATTTAGTTGAAGG TTCAATTTGATAAATAGACTCGATCAGAGCTTATTCCGATCATAACTTATTCACCTAATGTGATCTAAGATCCTCCATAG GATGACTCTCATGACTCATCCACATTAAAGAAAAAGCTAGCATGTTACTATTTTTTTTATTAGAAGGAGTACCACATTAT TAACTACCACATAGCATATAGTAAGTTAATTTTATTTTGTCTGATGTTAGATGCTATGGAATTCACAGTTACAGAAAGCT CAAGCAACAGGAGCAGTAGCAGCAATACAACAAGAGTAACAGGGGAAATAGGAAACGCTGTATACGAATACAGAGCAACA CCAACAGAGAACGTGACCAGAGAGGACCAAGGAAGAAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGC TGCAGAGATAAGAGACCCATTCAAAGCAACCAGGGTGTGGCTTGGAACATTCGAAACCGCCGAGGCCGCCGCCAGAGCCT ACGACGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCCAAACTCAACTTCCCTGAAAATGTCACTCTCCGGCAACAACTT CCGGCGACCCAATGGGGCGGCAACACCGTCGTGTCAATTCCCACGTCAACTGATCCGATTGTTCATACGGAAGCTCTTCC ACATTCTCAGCCTTTAAGCAACTTGTATTTCTTCCCACAAAGGAGTCTGTATGATAATCAGAATCAGAATATTATGACAA CAACATCAACAAGGGCTTCTCATCTTCAATCTTCGTCTTCACCGCCGCCACCGCGGGCTTCTTCTTCTTCTTCTTCCTCT GCCTCTTCTGCTTTTGGTTCCTCTGTGGCTTCTACGCAGGCTACTTCATTTTCTTCTTTGTATTCTAACCAGTTGCAGCA GCCATGGTCAGCTTCTGGTCATAGCTCTTCTTCCTCCGGCTGATACAATTCTATCAATTTTGTTTTGTAATTCTCTTCTT TTATAACATTTTTTCTTCTTCTTTTCATAACACCATTATATCCCCATCTTGCTTATCAATCCATTCTTGATACACATGAT TTTTGATGATGATGATGTCTCAAGATAAGTAAATTGTATTTGCTAAATTCTCATTTTTTATGCTAGAAAATTTAGGTTTG GAACCACATGTAACAACACATTTATGTCAGTCTTTTTTTTTTTTTTCTGTCGATCAATTATGTTACTCAGAAATTACTCC GTTCAAGTATGTTTTTTTTTTTTTTTGAATTTTGGATTTAACTTCAATTGTATAAGGATTTCTAAAGCGGGGTATAAAAC TTAGCTATACTAGCTATAACCTATTTTCCCATTTTTAACTTCAAAAATTCGTTGGAAGTTAAAGTCCTTACCATTAA
CDS sequence (LotjaGi1g1v0314000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGTTCCCGGGTTTGAACAGGGAGAGGGAGATGTCTGCCATGGTTTCAGCTTTGACCCATGTTGTCTCTGGAGATGT TCCAAGCGGTGATTACACGATTCCTCATGATTTTGGAGGAGGAAGTGTTAGACAAAACTTGCCTTCTTATTCTTCAGCTG CACCCTCTTTACCTTCTTCATCTGATTATGTTGCTAGTTCTTCTCTCAAGAGGAGTAGGGAAGATGATAGATCATCCTTC ATTGAATTCTCACATGGTGCTTCTTCCCCGGCTTTGCCAGCATCAACATATGCTATGGAATTCACAGTTACAGAAAGCTC AAGCAACAGGAGCAGTAGCAGCAATACAACAAGAGTAACAGGGGAAATAGGAAACGCTGTATACGAATACAGAGCAACAC CAACAGAGAACGTGACCAGAGAGGACCAAGGAAGAAGAAAATACAGAGGAGTGAGACAGAGACCATGGGGAAAATGGGCT GCAGAGATAAGAGACCCATTCAAAGCAACCAGGGTGTGGCTTGGAACATTCGAAACCGCCGAGGCCGCCGCCAGAGCCTA CGACGAAGCTGCCCTGCGTTTCAGAGGCAACAAGGCCAAACTCAACTTCCCTGAAAATGTCACTCTCCGGCAACAACTTC CGGCGACCCAATGGGGCGGCAACACCGTCGTGTCAATTCCCACGTCAACTGATCCGATTGTTCATACGGAAGCTCTTCCA CATTCTCAGCCTTTAAGCAACTTGTATTTCTTCCCACAAAGGAGTCTGTATGATAATCAGAATCAGAATATTATGACAAC AACATCAACAAGGGCTTCTCATCTTCAATCTTCGTCTTCACCGCCGCCACCGCGGGCTTCTTCTTCTTCTTCTTCCTCTG CCTCTTCTGCTTTTGGTTCCTCTGTGGCTTCTACGCAGGCTACTTCATTTTCTTCTTTGTATTCTAACCAGTTGCAGCAG CCATGGTCAGCTTCTGGTCATAGCTCTTCTTCCTCCGGCTGA
Protein sequence (LotjaGi1g1v0314000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMFPGLNREREMSAMVSALTHVVSGDVPSGDYTIPHDFGGGSVRQNLPSYSSAAPSLPSSSDYVASSSLKRSREDDRSSF IEFSHGASSPALPASTYAMEFTVTESSSNRSSSSNTTRVTGEIGNAVYEYRATPTENVTREDQGRRKYRGVRQRPWGKWA AEIRDPFKATRVWLGTFETAEAAARAYDEAALRFRGNKAKLNFPENVTLRQQLPATQWGGNTVVSIPTSTDPIVHTEALP HSQPLSNLYFFPQRSLYDNQNQNIMTTTSTRASHLQSSSSPPPPRASSSSSSSASSAFGSSVASTQATSFSSLYSNQLQQ PWSASGHSSSSSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 12 | 12 | - | – | |
| PANTHER | 8 | 312 | 305 | 5.2E-68 | – | |
| PANTHER | 8 | 312 | 305 | 5.2E-68 | – | |
| Phobius | 13 | 20 | 8 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 333 | 308 | - | – | |
| MobiDBLite | 45 | 70 | 26 | - | – | |
| MobiDBLite | 45 | 67 | 23 | - | – | |
| Gene3D | 146 | 207 | 62 | 1.8E-31 | ||
| ProSiteProfiles | 147 | 204 | 58 | 25.554 | ||
| SMART | 147 | 210 | 64 | 8.4E-37 | ||
| CDD | 147 | 206 | 60 | 5.39135E-22 | ||
| Pfam | 147 | 196 | 50 | 9.9E-14 | ||
| SUPERFAMILY | 147 | 205 | 59 | 8.5E-23 | ||
| PRINTS | 148 | 159 | 12 | 6.9E-12 | ||
| PRINTS | 170 | 186 | 17 | 6.9E-12 | ||
| MobiDBLite | 268 | 298 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0314000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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