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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0314100 |
| Transcript ID | LotjaGi1g1v0314100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonucleoside-diphosphate reductase; TAIR: AT2G21790.1 ribonucleotide reductase 1; Swiss-Prot: sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit; TrEMBL-Plants: tr|I1JY66|I1JY66_SOYBN Ribonucleoside-diphosphate reductase; Found in the gene: LotjaGi1g1v0314100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75898447..75903481) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATGTGATAAAGAGAGATGGGAGGCAAGAACCGGTTCATTTCGATGCGATAACCGCACGCATCAAGAAACTCAGTTT AGGATTGAACACTGAGCACTGCGATCCCGTTTTGGTTTCTCAGAAAGTGTGTGCCGGCATCTACAAGGGTGTTACCACCA CTCAACTCGATGAATTGGCCGCTGAAACCGCCGCCGCCATGACCACCAACCACCCTGACTACGCTTCTGTCAGTTCCTCT CTCCATTTCCCCAATTTTTTGTAATAATTTTGTCAATTTCTGCGTTGATTGATTGATTGTTGTTTGAATTTCTCAGTTGG CTGCCAAAATCGCTGTTTCCAATTTGCACAAGAACACCAGAGAATCGTTTTCCGAGACGTAAGTATGATCGAAGAAATGA TGATTGTTTGTTTAAAATTGTTCAGTTCAGCTAGTGGAATTTTGATGTATTTGTCATGATTGAAATTTTGGTGGATTTAG GGTTAAGATCATGTATGATCATTTTAATGAGGAATCTGGAATGAAGGCTCCTCTAATCGCTGATGATATTTATGAAATAA TCATGAAGGTACATGCTTATCTTGTAATTTTTTACCATAGATCAGAAGATTGGTTTAATTTTTATTTATTTTTTGTGATT ATTTGATATGAAATGTCTATAGGTTTGTTTAGCTATTGTTCTTTTGTTTGGGGTGATGAATTCAAGTTTTCATATTTTCT GTTTGCTTATAGAATGCGGTGCGATTGGACAGTGAGATCATCTATGGCAGGGACTTTGACTATGATTATTTTGGTTTCAA AACCCTTGAGAGATCCTACCTCTTGAAGGTACAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTG TTGGAATTCACAAGGATGATATTGAATCGGCTGTCAAAACCTACCATTTGTTGTCTGAAAGATGGTTCACTCATGCTTCT CCGACACTTTTCAATGCAGGAACACCTAGGCCTCAAGTATGATTTCAGTTACATCTCCCCTTGTCTTTGTGTGATTTCAT CTCCCTTTTTTTTAGTGATGTATTTGTGAATTGATGATATGAGAACTCATTTAAGTGACTGTTTTTGTGAATTGGCAGCT GAGTAGTTGCTTTCTAGTGTGCATGCAAGATGATAGTATAGAGGGTATATATGAGACTTTGAAGGAGTGTGCTGTCATCA GTAAATCAGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCAACAGGAAGTTACATTGGTGGGACTAATGGGACA TCCAATGGAATCGTCCCCATGTTGCGCGTGTTCAATAATACTGCCCGCTATGTTGACCAAGGGGGAGGCAAGAGGAAAGG TGAATAATTGAGTAATTCCTTTATTTAATGACCCCTCCTAAGTTGCCTTCCTTACATGACTACATGGTTCTTATAGGTGC ATTTGCTGTGTACTTGGAGCCATGGCATGCTGATATATTTGAGTTCCTGGATTTAAGGAAAAATCATGGAAAGGTATGAT TGGAAATGTTTAAAGGTTGTTGGAGCAATTTGCTTTGGTTGTTGCAATGGAGTTGTATGGACATACTTTATTGTTATCTT CATGTACTGGTGTCATATTTGCAGGAAGAACATCGTGCTCGGGATCTGTTTTATGCTCTTTGGGTGCCTGATCTTTTTAT GGAAAGAGTTCAGAAAAATGGAGAATGGTCTTTGTTTTGCCCCAGGGAAGCACCGGGTTTGGCAGATTGCTGGGGTGAGG AATTTGAGAAGCTTTATCATCGGTATGAAAAGGAAGTAAGTTAAACTCTGACAAGTAGGCTTATTTTCTTGCATGTTCAA GGTAGTGCTTTTCCTTATTAGAAGGCCTGGTTTTTACTAATTTTTATCATGGATGTAGGGAAAAGCAAAGAAGGTTGTTC AGGCCCAGAATCTGTGGTTTGAAATATTGAAGGCACAGATAGAAACTGGAAACCCTTACATGCTTTTTAAGGTTAACTGC TCAATCTCTACATGTTTTTGCGTCACTATAATTTGAGTTTATCATTTTTGTGTGTAAAATGAACCCTACATTTTTCATTG TGCTAGGATGCTTGCAATAGGAAAAGCAATCAACAGAATCTGGGTACAATAAAGTCGTCTAACTTGTGTACTGAGATAAT TCAGTATTCAAGTCCAACTGAGACGGCTGTATGCAATCTAGCATCAATTGCACTACCACAATATGTAAGAGAAAAGGTAA GAGTTCTCTTGTATGCTCCTGCTCCCATGTATTTTGGGATATGATTTGGTTTCTAGACCTTTTTTTTCCTTCTCGATTTG AATATTTTTCCTCCGGGCTATAGGGTGTGCCAGTGGAGTCTCATTCATCTAAGCTTATTGGGAGCACGGGCTCTGGAAAT CGGTATTTTGACTTTGATAAACTAGCAGAGGTATAATAACTGATTTTCTTGTGCTGTAACTTGTATACTTTCCCTTGTAT CATTATATATTACAAGACTTGTGATGGTTCTAATTTTGTTCTCATGACTTATTACAGATTACTGCAGTAGTCACAACAAA CCTGAATAAAATAATTGATGTCAATTACTACCCAGTTGAGAATGCAAAACGGTCAAACTTACGGCACAGACCCATTGGTA TTGGAGTTCAGGGACTTGCTGATACATTCATGCTACTTGGCTTGGCATTTGATTCACCAGAGGTAAATCTTGTTTTGGGG GCTGATGTTTGTATCCATTTTGAGTTCGCTGTACCTCAGTATGATAGTTTACTCATATTTAATGCAGGCTCAACAATTAA ATAAGGAGATATTTGAGACTATATACTATCATGCTCTAAAAACTTCATCTGATTTGGCTGTGAAAGAAGGTCCCTATGAG ACATATAGTGGTAGTCCTTTAAGCAAGGTATGCCAACTTAAGAGGATTTTCAATGCCCTCTTTTTTGAATCTTGAAGTGT AATTATACTGCCTTGTTTTTTTTGATGCAATGGCGCAAGCATCGCATGTATATTGAACTTGCAGTCAGAGGTCTAAAATT AGTAATGTTCACATCTAAGATGTTTAGTTTCTTATGTGACTTCCATATTGGCTAGGGAATTCTTCAACCAGACATGTGGG GTGTGACACCCTCCAACCGTTGGGATTGGGATGCACTTCGGGAGACGATATCAAAGAAGGGTGTACGAAATTCACTTCTG GTGGCCCCTATGCCAACTGCATCTACAAGCCAAATTCTTGGAAATAATGAGTGTTTTGAACCATACACTTCAAATATCTA CAGTCGTAGAGTTTTGAGGTTTGCTTCCCCATCCCATGTTATTATTCTGTCCTGGTTTATTATTGTCCTATTAAATTTGC TTACTATTTGTCTTCAGTGGTGAATTTGTTGTTGTGAACAAACATCTTCTTCACGACTTGACTGAAATGGGATTGTGGTC TCCTACAATTAAGAATCAGATAATCTATGAAAATGGTTCGGTTCAAAATATTTCAGAAATACCTGAGGAACTGAAGGCCA TATACAAGTATGAGATTTATGATTTCTCAACTTATCAAAGGTTTGCTTAATGTATGCGCCTTAACATAATTTTGTTTGGG CAGAACTGTTTGGGAAATCAAACAAAAGACGTTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGAGTCAAA GCTTGAATATTCACATGGATCAACCCAACTTTGGGAAGCTAACTTCCTTGCATTTCTATGCATGGTCCAAGGTAGCAGCA ACTTTAATATTGGAGGAAGTTAAATTTTGAAAACAGAACTGTGGATGGTTTACATTAATGAAAAATGCTAACAACTCTCA CCTTAATAAGAGACTATTTTTGGGGGTCTTGGCATGATATATTTTTTAGGTTAATTCTAACAGGTCTTCTGATCTCTGGT TTTACCTTCAAGTGATTGTCAATATCACAAAGGGGATAGTAAAAAGTGATAACTATATTACTTATGCACAAATATACCGT TTTTAGTTAGGCTTAAATACTCTGTAGGTCCCTGAAATTGTACCCCGTATCAAAATAAGTCCCTGAAAAAATTTTTTCCG ATTCCGGGTCCCTAGAAAAATTTGTTTGATCAAAATAAGTCCCTACGCCGGAGAAGACAGTGGTTGCCTTCTCATTGTTT CCACAAACCATGAAATAACATGTTTAAAACACTCCTAGACCTTCATATATCTGATCTGGGCGAAGAAATCGCAAGAAACA AAGCTAAAACGAAGAAACCGAGAAGCTCCATAAATTCCGGCGAGAAGAAATCAACTTGCGACTGGCCTTTTCTCTTCAAC TGTGACGACCCAGCCCACGAGACCACCACCACTGAGTTCCTGAGGACGAGACGAAGCCGGCCCAACACCCTGGTCGTAGC GCCGCCATGACCGCCGTCGTCAGCCACCGTCTTCTCCGGCGTAGGGACTTATTCTGATTAAAAAAACAATTCCAGGGATC CGGAATCGGAAAAAAAAAATTCAGGGACTTATTTTGATACGGGGTACAATTTCAGGGACCCCTAGAGTATTTAAGCCTTT TAGTTATTCTGCATTGGTGTTTGTTTTTACAAAGTTGAAATAGTTCGCATTGTTATTTACTTGCTAATTGGCATTATTCT TTTGGACATGCAATACCACTACTTTTTTTTTCTTGTCTTAAACTACATCTCTTTTGCTGAGAATTCTAGTGTTAGAGACC TATAATTTGCTGATTGACTTTATTTTGCTTTTTGTCTGGGCATCAAAGGGTCTAAAGACAGGAATGTATTATCTCCGAAC ACGAGCTGCAGCAGATGCTATTAAGTTCACTGTGGACACCTCTGCACTCAAAGTAATAAGAATACTTTGTGATCAATTTT TGCATTCATCTGATTTCATTTTCACATGTAGATACTAAATATTTTTGTTGTGAATGCAGGAAAAACCTAACACGGAGTGT GATGTTGACACAAAGATGGCACAAGTGGTGTGCTCTCTAACAAACCCTGAAGAGTGCTTGGCTTGTGGGAGTTAA
CDS sequence (LotjaGi1g1v0314100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGCTCCTCTAATCGCTGATGATATTTATGAAATAATCATGAAGAATGCGGTGCGATTGGACAGTGAGATCATCTA TGGCAGGGACTTTGACTATGATTATTTTGGTTTCAAAACCCTTGAGAGATCCTACCTCTTGAAGGTACAAGGAAAGGTTG TGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCACAAGGATGATATTGAATCGGCTGTCAAAACCTAC CATTTGTTGTCTGAAAGATGGTTCACTCATGCTTCTCCGACACTTTTCAATGCAGGAACACCTAGGCCTCAACTGAGTAG TTGCTTTCTAGTGTGCATGCAAGATGATAGTATAGAGGGTATATATGAGACTTTGAAGGAGTGTGCTGTCATCAGTAAAT CAGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCAACAGGAAGTTACATTGGTGGGACTAATGGGACATCCAAT GGAATCGTCCCCATGTTGCGCGTGTTCAATAATACTGCCCGCTATGTTGACCAAGGGGGAGGCAAGAGGAAAGGTGCATT TGCTGTGTACTTGGAGCCATGGCATGCTGATATATTTGAGTTCCTGGATTTAAGGAAAAATCATGGAAAGGAAGAACATC GTGCTCGGGATCTGTTTTATGCTCTTTGGGTGCCTGATCTTTTTATGGAAAGAGTTCAGAAAAATGGAGAATGGTCTTTG TTTTGCCCCAGGGAAGCACCGGGTTTGGCAGATTGCTGGGGTGAGGAATTTGAGAAGCTTTATCATCGGTATGAAAAGGA AGGAAAAGCAAAGAAGGTTGTTCAGGCCCAGAATCTGTGGTTTGAAATATTGAAGGCACAGATAGAAACTGGAAACCCTT ACATGCTTTTTAAGGATGCTTGCAATAGGAAAAGCAATCAACAGAATCTGGGTACAATAAAGTCGTCTAACTTGTGTACT GAGATAATTCAGTATTCAAGTCCAACTGAGACGGCTGTATGCAATCTAGCATCAATTGCACTACCACAATATGTAAGAGA AAAGGGTGTGCCAGTGGAGTCTCATTCATCTAAGCTTATTGGGAGCACGGGCTCTGGAAATCGGTATTTTGACTTTGATA AACTAGCAGAGATTACTGCAGTAGTCACAACAAACCTGAATAAAATAATTGATGTCAATTACTACCCAGTTGAGAATGCA AAACGGTCAAACTTACGGCACAGACCCATTGGTATTGGAGTTCAGGGACTTGCTGATACATTCATGCTACTTGGCTTGGC ATTTGATTCACCAGAGGCTCAACAATTAAATAAGGAGATATTTGAGACTATATACTATCATGCTCTAAAAACTTCATCTG ATTTGGCTGTGAAAGAAGGTCCCTATGAGACATATAGTGGTAGTCCTTTAAGCAAGGGAATTCTTCAACCAGACATGTGG GGTGTGACACCCTCCAACCGTTGGGATTGGGATGCACTTCGGGAGACGATATCAAAGAAGGGTGTACGAAATTCACTTCT GGTGGCCCCTATGCCAACTGCATCTACAAGCCAAATTCTTGGAAATAATGAGTGTTTTGAACCATACACTTCAAATATCT ACAGTCGTAGAGTTTTGAGTGGTGAATTTGTTGTTGTGAACAAACATCTTCTTCACGACTTGACTGAAATGGGATTGTGG TCTCCTACAATTAAGAATCAGATAATCTATGAAAATGGTTCGGTTCAAAATATTTCAGAAATACCTGAGGAACTGAAGGC CATATACAAAACTGTTTGGGAAATCAAACAAAAGACGTTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGA GTCAAAGCTTGAATATTCACATGGATCAACCCAACTTTGGGAAGCTAACTTCCTTGCATTTCTATGCATGGTCCAAGGGT CTAAAGACAGGAATGTATTATCTCCGAACACGAGCTGCAGCAGATGCTATTAAGTTCACTGTGGACACCTCTGCACTCAA AATACTAAATATTTTTGTTGTGAATGCAGGAAAAACCTAA
Protein sequence (LotjaGi1g1v0314100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKAPLIADDIYEIIMKNAVRLDSEIIYGRDFDYDYFGFKTLERSYLLKVQGKVVERPQHMLMRVAVGIHKDDIESAVKTY HLLSERWFTHASPTLFNAGTPRPQLSSCFLVCMQDDSIEGIYETLKECAVISKSAGGIGVSVHNIRATGSYIGGTNGTSN GIVPMLRVFNNTARYVDQGGGKRKGAFAVYLEPWHADIFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQKNGEWSL FCPREAPGLADCWGEEFEKLYHRYEKEGKAKKVVQAQNLWFEILKAQIETGNPYMLFKDACNRKSNQQNLGTIKSSNLCT EIIQYSSPTETAVCNLASIALPQYVREKGVPVESHSSKLIGSTGSGNRYFDFDKLAEITAVVTTNLNKIIDVNYYPVENA KRSNLRHRPIGIGVQGLADTFMLLGLAFDSPEAQQLNKEIFETIYYHALKTSSDLAVKEGPYETYSGSPLSKGILQPDMW GVTPSNRWDWDALRETISKKGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLW SPTIKNQIIYENGSVQNISEIPEELKAIYKTVWEIKQKTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKG LKTGMYYLRTRAAADAIKFTVDTSALKILNIFVVNAGKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 668 | 668 | 0.0 | ||
| Gene3D | 1 | 658 | 658 | 3.4E-298 | – | |
| PANTHER | 1 | 668 | 668 | 0.0 | – | |
| SUPERFAMILY | 2 | 104 | 103 | 1.27E-38 | ||
| Pfam | 32 | 102 | 71 | 1.4E-23 | ||
| TIGRFAM | 35 | 651 | 617 | 9.0E-220 | ||
| CDD | 57 | 650 | 594 | 0.0 | – | |
| SUPERFAMILY | 105 | 660 | 556 | 7.94E-195 | – | |
| Pfam | 106 | 647 | 542 | 1.2E-192 | ||
| PRINTS | 183 | 202 | 20 | 4.1E-67 | ||
| PRINTS | 313 | 324 | 12 | 4.1E-67 | ||
| PRINTS | 370 | 393 | 24 | 4.1E-67 | ||
| PRINTS | 408 | 430 | 23 | 4.1E-67 | ||
| PRINTS | 436 | 459 | 24 | 4.1E-67 | ||
| ProSitePatterns | 490 | 512 | 23 | - | ||
| PRINTS | 501 | 528 | 28 | 4.1E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi1g1v0314100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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