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LotjaGi1g1v0314500.1

Overview

Field Value
Gene ID LotjaGi1g1v0314500
Transcript ID LotjaGi1g1v0314500.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description RNA binding protein; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q5RC80|RBM39_PONAB RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi1g1v0314500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:75947887..75955264) extracted from Lotus japonicus Gifu genome v1.2.

AAATTGAAATGTACCTATGTTTATTTTTTATTTTAATTTTTGGGTGATAAACTAATTCACGTATTTATTTAAATTTTCTG TTTTTTCGGCCTTTATTTTTTCGTTCGGTAATATTTAAAAACTATAACAGATTAGGGAGAGTGGAAGAAACCTGTTCAGT TCTGTTTCACTTTGCTTTCCTATCTGAAGAGAAACCCCCAAAACCCTAGAATTTCAGAGACAGAAATTGATAGAACAAGC AATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGAGGATAGAGACTCCAGCAAGGAGAAGAAGA ACGAGAGCGGCGACAAGACCGAACGGAGCTACCGGAAGCGCGAGATCGACGACGACGCCGCCGATGACCGGAAGAGCAAG AGGTCCAGGGGAGACGACGAAAATGGCTCCAGAAAGGATAGGGATCGTGATGAACGTGACAAGGAGCGCCATAGAAGTAG CAGAGATAGGGATAGGGATAGGGATGGCGAGAGGAGTAGCAGAGACAGAGATGGTGTGAGGAGTAGCAGAGACAGAGACA GAGATAGTGTGAGGAGTAGTAGAGACAGAGACGGTGGGAGGAGTAGCAGAGATAGGGACAGAGATGGTGAGAGGAGTAGC AGAGATAGGGACAGAGATAGAGACAGGGGCAGGGAGAAGGAGAAGGAGAGAGACAGGGAGAAAGATAGGGAGCGGAGAGA AAGGGACAAAGAGAAGGAGAAGGATAGGGAGAGGGAGAGAGACAGAGAGAAAAAGGAGAGGGAGAAGGAGAAAGAGAGGG AGAGAGAACGGGAGGAGAGAGAGAGGTCCAGGAGGAGCAGGAGTCATTCTGTGCGAGATAGAGAAAAAGAACGCGATTTC GAATCTAGAGATGCCAGGTAACGTTCGTTCCCTTGTAAATCATGTTTTTCCTTTGTGAATTTGCATTATTTGCCTGAGCT ATTCTGTTGATTATCAGCTATGTGGTAACTGAAGTTCACGGCGCATTTCAAGCGTCTCGCTTAATACTTAAGACATTGAC AATTAAGCATTAAGGCATAAGATTAATATAATCTTTATAATGTTTAAACTCTAGTAAGCTAAAATGTGTGCATATGGAAC TAGTTTTGAAGAGTGCGAACTTCGAAGTAACAGTTTGTTTCCTTTAGTAGTAAACAAAACCTCTTAGTAACAAGGCTTTG TGCTTTACCCTATCTGGCTTAAACTTGAGTTGCAAGTTAGCATTGGTTGCGTAATATGTATCCATCAACCATGTGTAACC AATAAGTACTAGCACCGGATATGTACCAGGTACAGTGCATTAGCTATTTAGGAGTAGCCATGGTGTTGCCCCCAATGTGG TGTGCGCTTAACTTCAGACCATTTCGCATGTTGCTTACATCCCCTCAGTAGTTAATTACTATCTAATCCATTTTTCATTT ATACGGGCAGGTGGAAATTGGAATAGAGAACTGAGATCTCTATTTGGTTATGTACCAAAAAGTTTGTTAATGAGCCAAAT AAGGGGTGCTGACATATTTATGAACATCGTCTATATTCATTTGACCTTTCGTTTGTATTATCTCAGTAAGGTGTTCACAT GCCATCTTTAATGGATGTAGATGTAGATATCATTCAAATCATGTCAAGTATGGGTGTTGGGTCTCCATCTGGAATAAGTA TTGAGGTGCATAACTAGCTAGACTATGCATCGTCTCTTAAATGTTGGGACCCAGGCAATAGTTTTGATTAATTTTTCTTA AGGAAATATTACAGGCATTGGGCTGTATTGATATTACAGGATTAAATGCTACTTTAGACCCTTATATTTAACACTATACT TTGGAATAATGGCTGCAGTTAAGACTTTGAGACGTTAATCACTGTTAGAATTTAAGTTACATTCACACATCACCGCAAAA CCTTAAGCTTAAGGCAATGGGTGCATGGTTCCTTTATTTTATATACACTTGTACACTAGCTAATCTACCCAATGTGGGAC TTATTTGAGTCTCCACTTAGTATTCTCTTAAAATCACTTGTCCCTCTGAAGATTACTTTTTTGGGATTCTAATATTAGCA ATGTATGTTCACATTTATGCTACTAATTATACAATCTCTATATCTAGTTCAAATTTGATGGACTTCTCTATAGGTATGTA TATTCTTAAAGCTGAATTTTAACCTAAATTGCAGGAGATTTAGGGATAAAAAAGATGCCGCGGAGCCTGAGGCAGATCCA GAAAGGGATCAGAGAACTGTTTTTGCCTACCAGGTTGATTTGTTGGCTTCATTGGCCCCTTTTCTGTTTTTGTTTTAATT ATTTAAGGTCTGATATTTTAGGACACTGCATCATTTTCTGATGATTCCCAATGATCTATGTGATGATTGCAGATGCCCTT AAAGGCAACCGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTCAGTCATTTCATATTACATGCAGTTCAGT GCAATCTTTTATGTAGATTTCTGTCTTATTTTACTATGTTACAAATTGGAGATGACTTGGGGAGGCTTATCTGAGAAGCT TTTTGAAATAAGCTCAATATTGTATAGTATGCATAAGTGCATATTCATAAGTTAATTTGAGTAACTTATGAAAACAAGGC TCAAAACAGGTTCTAAGTAGGTCATAAGCTATATTCGTAAACTTTCGAAACACTTGCACATGCTTCTATTATAAGATAAG CTCAAACAAGCTCTTACTAACACAATCTTATGTTGCTAACTTGCTATTGGAACATTTAGTGTGTGCGTAGGGTATAATAC TGCATGATATGTGATGTAGAGTAATAACAATCAAGGCTTCAATAAGTAGTATGGTGATTTAGTGTAAGGAACATTCTGTG TGTATTGTGATGAGTGAATTAGAGGTTATATAGATATTTTGGACCCCTGGATGTAGTTGTTTGCATGCTTAGAGTGGAGT CTTGTATGTTCCTGATTTTTTCTATCATGTGATACAGTGATAGTTCTTCAAGTGTATTTACTTCTAATGTTCTTTATTTT CAGGTGAGGGATGTCCGTCTTATCATGGATAGGAATTCCAGACGGTCTAAAGGAGTTGGGTATGTTCTTCTTGTAAATAA TTTATTCTTCATATGCATGCACTATATTGTGATATTAGGATATAAACTTTCAAGAATCATATTTAACTGTATTCTTAAAT GGACTAGCAATGCGATAATGATGAGGGATGATGGGAATACCTTGCACTCATGTTTAATCAATTCATGCTGCGTACTCAAG GTAGATGACATAATCCTGATTTCTTTTGGTCCTTTCCCAATTTTCTTCATCTACATTTGCCATACACACACAGTGAGGAT TTCTTTCTTATGTTGTTGAGCCCTATTAGTTTATATCACTTTAACTGGTTATGAGGTACTTCTTGGTGAGGTTGATGTGG AGGAATTTTCTTCTGCACTGAGTGCATTCCTTATTCCCTTTTTACTCCATTTTATTTTTGGGCTGGGGGGATGGGTCGGG AGGGGATGAAATGCATATGGATTTGGTGCTGCTTGGCTTTTAGAATTTGACAAGTGAGTTGCAGTACCTGGCCAGCTTTA AGTTGGGTTCCTTTTTCTTAGGATTTGAATTTAATTTGCTAACATGCTCATTAATTAAGGGAAGGATGAGTTGTTGGTTA CCCTATCCTTCCAGTTTTGGGGGCTCATCTCTTATTCTCTCCTTGATTGAACAATGTTTTGAATTGTATTATTATTATGT CACGCTAATATTTTCTTCACATGAGTCAGATACATCAAAAGATACTCTCTGCTTGAGCTGTCTTTACTAGAGTTTTTGTT TCCCTACATCTGTTTGCTGCATGCTTTGTAAGTTTTGATTGCAACTGTTTGTATTTTGTAGTTCTGAAAACTTGATGTAT GTTCTTGATGAGGCTGCAGGTATATTGAATTTTATGATGCAATGTCCGTCCCAATGGCAATTGCTCTCTCTGGGCAACTT CTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTACTGCTACTAGTGGAGCTGC TGGTGTAGCAGGACCATATGGAGCTGTGGACCGAAAACTTTATGTTGGAAACCTTCACTTCAATATGACAGAAAGTCAGT TGAGAGAGGTATTATGATATTTGCTTTCTATTGAATGTATGACATGAATTTTCATCACTGCCAGTCATCATCAGCAACAT GTATGACAAAGCCAACCGATGATTTAATAAAAATATACCTTTATGAACTAACTAGATACTTTTTCTCTATACTGGTTCAG TGCATCTACTTTTGTTGTCAAACTTCTGCTGATTTGAATCTTGATTTGATAATTTGTCATTTATAAGCTTTTGATATTGC TTCCCTTCAGATTTTTGAGCCATTTGGTCCCGTGGAGGTTGTACAACTGCCTCTTGACCTGGAGACTGGACATTGCAAGG GGTTTGGGTTTATTCAAGTTCGTTGCTAATGCTTAACTTTGAAAGTTTTCTTTCTGATGATATTTCTGTTACTTAGCTTT TCGTATGTTAATTCGTGGACAGTTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGACATTG CTGGAAGAACTATTAAGGTAAAAAAATAAAATTGCGTGGGTCAGTTTGTTTCTCACTTTGCTTTTATATTTTGTTTGTAA TTAATGTTGTTTATCAAACACAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGACACAACTGCAAAATCTGCAGAC TTTGATGATGATGAAGGTGGATTGGTAAGCACCAATGTTCTGAAAACCAGACCGGTCATCAAAGCCATCTCTGAAAACCG GACTAAGCACACTTATAAATGAAATATATATCTCCTCATTTATTAAGCTTTTTAGGCTTGATTGACGAAGCTTTGTTTAT TTCAATATTACTTTATTAATTATACACTCTAGCTTTAAACGTTGCAGTTGGATGAGAAGATTATTACTATTTGATAGATA GTTGTATTGAAGTTTATGTTTATTGAGTGTTCACTATTTCCGCTCCTTTTCTTTATTGGGTAACTTTATATTGAGAAGGC ATTACATAAGTGAAGATGTCAAATAAAACAAATACTAGTGAATAATGATATCTTATGCATTTCCCAATTCACTGGACTTA GGTCAGACATTACTTGCAACATTCCCTATTTCACTCTTCCCTGATCTGGTTCAAAATACAAACTAAACTATTTCTGCTTT CATATTTTATGCAGCCAGAAACTGCAATTTTTCCCTTATCCTGGGCAGGGTGGTAGTAGATAAGGATTTGCCAATCCGCT ACGATCTCTCTTCCTTCCTCGTTTCTGTTTTTTATAATGACTATATCATTAATCTATTGTCTTCTTAGTAATGATTTTCT TGCTCGTTTATTGTGCTTTTTTCTATACACAGGCTTTAAATGCCCAATCAAGAGCGTTGCTTATGCAGAAGCTGGATCGT TCAGGCATTGCTGCAAGGTTTATCTCAATATTTTCTCTTTTATTCTGTGAATTCATCAATTATCTTAATGGATTCCAAAC ACTGCAGCATTGGTATGCCCACTGTAAATGGATCCGCTCCTGCTCAACAGGCAAGCTTGCCAATTGGTAATCCAGGAATA ATACCAGTACCAACTCTCCCAACACAAATTATGCCTACCCAAGTGGCTGAACCTGTTGGTAACCCGAGCGAATGCTTACT GTTGAAGAATATGTTTGATCCAACCACAGAGGTTAGGATTACCTGGTTGATTATAATTATATCATATGTTTCATTTAATA GAACTAAATATCAAATGTTACCATATGCAGACAGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTG TTCTAAATTTGGACGGGTTAAGCATATCTATGTCGACAAGTAAGTTCATGAACGTGTAGATTCATCCTTGGATCTTCCAT TCATTCTTTGTTATTTATTTATTTTTTCATTTTCTTTCCTTTGTGCATACTCGTCAGTTTTTAATCGATTCATCTTTTAT GCAGAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGATACGGTGGAAGCAGCAAGTGCGGCTCAACGTGCTATGCACACG AGATGGTTTGCACGCAGATTGATTTCAGCTATCTACATGGTAAGTGTTTGTGCTGAGTTCCCTGCTTACATTTTTTATCC TTGACTTCAGTTTTGCAAATTTAACTGGAATAAATTATAGTTAAAATCACAGTGAAGTCCCTTGTCTCAAATGGAGGGTT TGTGTTTGAGAAAGAAAAAAACTATACTTGGTATTGTCTGATGGAGTTTTAATCAGGGAAGCTAATAAGAGATGTGAGTG TGATTAACAAAATATGGACCAATAAGCTAGAATTAAACTGTACCAAGTTTATAGGGACCCGAAATATGTTTAATTTTAAA GTAGAAGGTAATTAATGGAATCAATATCGATAATATATACATATTATTTCAGCTTAATAAAAAGAACCAAACGCTTGATT GGCTTATTAGGTTGTTTTCTCTAGATGGGTCATGGATTTGGGGAATCCTTTGATCTAATATAAGTAGTGGGAATCGAACC TAAAACTTTCTAGTGAAGAGCGTTCACTGTTTTTCTTATGGAATGCATCTTTGTATATTTGATGTTAGTAGACTTGTACT AATCTTGCTAGGTAATGTAACAATTTTACCTTCACTGGCTTAATAAATGGTAGCGAATCTGACTACTAGATTGTTACATG TGTTAATATCATGTGCAAAACTTAAATTATACGGGGAATTTAGTGGGTCAAGTTAAATGGAATTGCTATCATATGCATTC TTAAGAAATAGTTGTTTCTATTTTGCAGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGAAGTTTGAAGAAGTGGTT ACAGACCTTGTGGCTCTTAAAGCAACAATCTGCATATTTTTCTCAGATTAGTTTTTGGAAATTGAGTTTTTAATTTATAA AAGTTTAATTCATCACTTGTATTATTAGATGTATGACTGCAGAATTTTTACTCCAGGTGGTGATTTTGGTGATCAGTATA TTACAATCTCGCGTCTCAGTGTATTTTAACTGTGGTACTGTGTCTATAATGTTTTATATTCTTGGTTACTCTGTTGGCGT GGTAGCTCTGATGTTGTACTCTTATCAACTTTCGTCAATAACGCTGCAGTGAATTGTGCGTTACGCCCCTTAACAAAAAA GAATTGTACGTTACGAAAGGGTATCATGATTCATGAGCTTTTTTAGCAGAAAAAAAAAAGATTGGATAAGTTGAGGAAAC TTTTTTTGTGAGGGGGAG 

CDS sequence (LotjaGi1g1v0314500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGAGGATAGAGACTCCAGCAAGGAGAAGAAGAA CGAGAGCGGCGACAAGACCGAACGGAGCTACCGGAAGCGCGAGATCGACGACGACGCCGCCGATGACCGGAAGAGCAAGA GGTCCAGGGGAGACGACGAAAATGGCTCCAGAAAGGATAGGGATCGTGATGAACGTGACAAGGAGCGCCATAGAAGTAGC AGAGATAGGGATAGGGATAGGGATGGCGAGAGGAGTAGCAGAGACAGAGATGGTGTGAGGAGTAGCAGAGACAGAGACAG AGATAGTGTGAGGAGTAGTAGAGACAGAGACGGTGGGAGGAGTAGCAGAGATAGGGACAGAGATGGTGAGAGGAGTAGCA GAGATAGGGACAGAGATAGAGACAGGGGCAGGGAGAAGGAGAAGGAGAGAGACAGGGAGAAAGATAGGGAGCGGAGAGAA AGGGACAAAGAGAAGGAGAAGGATAGGGAGAGGGAGAGAGACAGAGAGAAAAAGGAGAGGGAGAAGGAGAAAGAGAGGGA GAGAGAACGGGAGGAGAGAGAGAGGTCCAGGAGGAGCAGGAGTCATTCTGTGCGAGATAGAGAAAAAGAACGCGATTTCG AATCTAGAGATGCCAGGAGATTTAGGGATAAAAAAGATGCCGCGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACT GTTTTTGCCTACCAGATGCCCTTAAAGGCAACCGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTGAGGGA TGTCCGTCTTATCATGGATAGGAATTCCAGACGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCCGTCC CAATGGCAATTGCTCTCTCTGGGCAACTTCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTA GTTCAATCTACTGCTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTGGACCGAAAACTTTATGTTGGAAA CCTTCACTTCAATATGACAGAAAGTCAGTTGAGAGAGATTTTTGAGCCATTTGGTCCCGTGGAGGTTGTACAACTGCCTC TTGACCTGGAGACTGGACATTGCAAGGGGTTTGGGTTTATTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGT TTAAATGGAAAATTGGACATTGCTGGAAGAACTATTAAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGACACAAC TGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCGTTGCTTATGCAGAAGC TGGATCGTTCAGGCATTGCTGCAAGCATTGGTATGCCCACTGTAAATGGATCCGCTCCTGCTCAACAGGCAAGCTTGCCA ATTGGTAATCCAGGAATAATACCAGTACCAACTCTCCCAACACAAATTATGCCTACCCAAGTGGCTGAACCTGTTGGTAA CCCGAGCGAATGCTTACTGTTGAAGAATATGTTTGATCCAACCACAGAGACAGAACCAGATTTTGATCTAGACATTAAAG AGGATGTAGAAGAAGAGTGTTCTAAATTTGGACGGGTTAAGCATATCTATGTCGACAAAAGAAGTGCAGGTTTTGTGTAT TTGCAGTTTGATACGGTGGAAGCAGCAAGTGCGGCTCAACGTGCTATGCACACGAGATGGTTTGCACGCAGATTGATTTC AGCTATCTACATGCAACCTCAGGTATATGAAGCCAAGTTTAAAGGGGAAGTTTGA 

Protein sequence (LotjaGi1g1v0314500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDFDEYDYLEKTVEEQEDRDSSKEKKNESGDKTERSYRKREIDDDAADDRKSKRSRGDDENGSRKDRDRDERDKERHRSS RDRDRDRDGERSSRDRDGVRSSRDRDRDSVRSSRDRDGGRSSRDRDRDGERSSRDRDRDRDRGREKEKERDREKDRERRE RDKEKEKDRERERDREKKEREKEKEREREREERERSRRSRSHSVRDREKERDFESRDARRFRDKKDAAEPEADPERDQRT VFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNL VQSTATSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVVQLPLDLETGHCKGFGFIQFAHLEHAKAAQS LNGKLDIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGMPTVNGSAPAQQASLP IGNPGIIPVPTLPTQIMPTQVAEPVGNPSECLLLKNMFDPTTETEPDFDLDIKEDVEEECSKFGRVKHIYVDKRSAGFVY LQFDTVEAASAAQRAMHTRWFARRLISAIYMQPQVYEAKFKGEV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 238 238 -
MobiDBLite 12 238 227 -
TIGRFAM 133 600 468 9.1E-169
Coils 164 199 36 -
Gene3D 168 324 157 4.1E-27
PANTHER 203 591 389 2.4E-214
PANTHER 203 591 389 2.4E-214
SUPERFAMILY 232 320 89 7.12E-21
ProSiteProfiles 239 316 78 15.426
CDD 240 312 73 2.59437E-44
SMART 240 312 73 6.4E-17
Pfam 246 308 63 1.6E-10
Gene3D 337 433 97 4.4E-25
SUPERFAMILY 341 593 253 3.4E-32
ProSiteProfiles 341 419 79 18.103
SMART 342 415 74 1.1E-25
Pfam 343 413 71 3.8E-20
CDD 343 415 73 2.41675E-32
Pfam 434 527 94 1.7E-20
Gene3D 506 603 98 6.9E-31
CDD 509 591 83 1.36418E-37
SMART 511 589 79 2.2E-4
Pfam 533 586 54 9.1E-6

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Biological process MRNA processing Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0314500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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