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SF-CC1: splicing factor, CC1-like family
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | PREDICTED: RNA-binding protein 39-like isoform X2 [Cicer arietinum] gi|502136894|ref|XP_004502884.1| | 20 | ||
| – | PREDICTED: RNA-binding protein 39-like [Cicer arietinum] gi|502139943|ref|XP_004503982.1| | 18 | ||
| – | RNA-binding protein [Medicago truncatula] gi|357519763|ref|XP_003630170.1| | 13 | ||
| – | RNA binding protein; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q5RC80|RBM39_PONAB RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi1g1v0314500 | 19 | ||
| – | RNA binding protein; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q5RC80|RBM39_PONAB RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi1g1v0314500 | 19 | ||
| – | RNA-binding protein 39; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q14498|RBM39_HUMAN RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi4g1v0406100 | 19 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 16.67 |