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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0314500 |
| Transcript ID | LotjaGi1g1v0314500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein; TAIR: AT5G09880.1 Splicing factor, CC1-like protein; Swiss-Prot: sp|Q5RC80|RBM39_PONAB RNA-binding protein 39; TrEMBL-Plants: tr|G7LC87|G7LC87_MEDTR CC1-like splicing factor; Found in the gene: LotjaGi1g1v0314500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:75948128..75954181) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGAGGATAGAGACTCCAGCAAGGAGAAGAAGAA CGAGAGCGGCGACAAGACCGAACGGAGCTACCGGAAGCGCGAGATCGACGACGACGCCGCCGATGACCGGAAGAGCAAGA GGTCCAGGGGAGACGACGAAAATGGCTCCAGAAAGGATAGGGATCGTGATGAACGTGACAAGGAGCGCCATAGAAGTAGC AGAGATAGGGATAGGGATAGGGATGGCGAGAGGAGTAGCAGAGACAGAGATGGTGTGAGGAGTAGCAGAGACAGAGACAG AGATAGTGTGAGGAGTAGTAGAGACAGAGACGGTGGGAGGAGTAGCAGAGATAGGGACAGAGATGGTGAGAGGAGTAGCA GAGATAGGGACAGAGATAGAGACAGGGGCAGGGAGAAGGAGAAGGAGAGAGACAGGGAGAAAGATAGGGAGCGGAGAGAA AGGGACAAAGAGAAGGAGAAGGATAGGGAGAGGGAGAGAGACAGAGAGAAAAAGGAGAGGGAGAAGGAGAAAGAGAGGGA GAGAGAACGGGAGGAGAGAGAGAGGTCCAGGAGGAGCAGGAGTCATTCTGTGCGAGATAGAGAAAAAGAACGCGATTTCG AATCTAGAGATGCCAGGTAACGTTCGTTCCCTTGTAAATCATGTTTTTCCTTTGTGAATTTGCATTATTTGCCTGAGCTA TTCTGTTGATTATCAGCTATGTGGTAACTGAAGTTCACGGCGCATTTCAAGCGTCTCGCTTAATACTTAAGACATTGACA ATTAAGCATTAAGGCATAAGATTAATATAATCTTTATAATGTTTAAACTCTAGTAAGCTAAAATGTGTGCATATGGAACT AGTTTTGAAGAGTGCGAACTTCGAAGTAACAGTTTGTTTCCTTTAGTAGTAAACAAAACCTCTTAGTAACAAGGCTTTGT GCTTTACCCTATCTGGCTTAAACTTGAGTTGCAAGTTAGCATTGGTTGCGTAATATGTATCCATCAACCATGTGTAACCA ATAAGTACTAGCACCGGATATGTACCAGGTACAGTGCATTAGCTATTTAGGAGTAGCCATGGTGTTGCCCCCAATGTGGT GTGCGCTTAACTTCAGACCATTTCGCATGTTGCTTACATCCCCTCAGTAGTTAATTACTATCTAATCCATTTTTCATTTA TACGGGCAGGTGGAAATTGGAATAGAGAACTGAGATCTCTATTTGGTTATGTACCAAAAAGTTTGTTAATGAGCCAAATA AGGGGTGCTGACATATTTATGAACATCGTCTATATTCATTTGACCTTTCGTTTGTATTATCTCAGTAAGGTGTTCACATG CCATCTTTAATGGATGTAGATGTAGATATCATTCAAATCATGTCAAGTATGGGTGTTGGGTCTCCATCTGGAATAAGTAT TGAGGTGCATAACTAGCTAGACTATGCATCGTCTCTTAAATGTTGGGACCCAGGCAATAGTTTTGATTAATTTTTCTTAA GGAAATATTACAGGCATTGGGCTGTATTGATATTACAGGATTAAATGCTACTTTAGACCCTTATATTTAACACTATACTT TGGAATAATGGCTGCAGTTAAGACTTTGAGACGTTAATCACTGTTAGAATTTAAGTTACATTCACACATCACCGCAAAAC CTTAAGCTTAAGGCAATGGGTGCATGGTTCCTTTATTTTATATACACTTGTACACTAGCTAATCTACCCAATGTGGGACT TATTTGAGTCTCCACTTAGTATTCTCTTAAAATCACTTGTCCCTCTGAAGATTACTTTTTTGGGATTCTAATATTAGCAA TGTATGTTCACATTTATGCTACTAATTATACAATCTCTATATCTAGTTCAAATTTGATGGACTTCTCTATAGGTATGTAT ATTCTTAAAGCTGAATTTTAACCTAAATTGCAGGAGATTTAGGGATAAAAAAGATGCCGCGGAGCCTGAGGCAGATCCAG AAAGGGATCAGAGAACTGTTTTTGCCTACCAGGTTGATTTGTTGGCTTCATTGGCCCCTTTTCTGTTTTTGTTTTAATTA TTTAAGGTCTGATATTTTAGGACACTGCATCATTTTCTGATGATTCCCAATGATCTATGTGATGATTGCAGATGCCCTTA AAGGCAACCGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCAAGGTCAGTCATTTCATATTACATGCAGTTCAGTG CAATCTTTTATGTAGATTTCTGTCTTATTTTACTATGTTACAAATTGGAGATGACTTGGGGAGGCTTATCTGAGAAGCTT TTTGAAATAAGCTCAATATTGTATAGTATGCATAAGTGCATATTCATAAGTTAATTTGAGTAACTTATGAAAACAAGGCT CAAAACAGGTTCTAAGTAGGTCATAAGCTATATTCGTAAACTTTCGAAACACTTGCACATGCTTCTATTATAAGATAAGC TCAAACAAGCTCTTACTAACACAATCTTATGTTGCTAACTTGCTATTGGAACATTTAGTGTGTGCGTAGGGTATAATACT GCATGATATGTGATGTAGAGTAATAACAATCAAGGCTTCAATAAGTAGTATGGTGATTTAGTGTAAGGAACATTCTGTGT GTATTGTGATGAGTGAATTAGAGGTTATATAGATATTTTGGACCCCTGGATGTAGTTGTTTGCATGCTTAGAGTGGAGTC TTGTATGTTCCTGATTTTTTCTATCATGTGATACAGTGATAGTTCTTCAAGTGTATTTACTTCTAATGTTCTTTATTTTC AGGTGAGGGATGTCCGTCTTATCATGGATAGGAATTCCAGACGGTCTAAAGGAGTTGGGTATGTTCTTCTTGTAAATAAT TTATTCTTCATATGCATGCACTATATTGTGATATTAGGATATAAACTTTCAAGAATCATATTTAACTGTATTCTTAAATG GACTAGCAATGCGATAATGATGAGGGATGATGGGAATACCTTGCACTCATGTTTAATCAATTCATGCTGCGTACTCAAGG TAGATGACATAATCCTGATTTCTTTTGGTCCTTTCCCAATTTTCTTCATCTACATTTGCCATACACACACAGTGAGGATT TCTTTCTTATGTTGTTGAGCCCTATTAGTTTATATCACTTTAACTGGTTATGAGGTACTTCTTGGTGAGGTTGATGTGGA GGAATTTTCTTCTGCACTGAGTGCATTCCTTATTCCCTTTTTACTCCATTTTATTTTTGGGCTGGGGGGATGGGTCGGGA GGGGATGAAATGCATATGGATTTGGTGCTGCTTGGCTTTTAGAATTTGACAAGTGAGTTGCAGTACCTGGCCAGCTTTAA GTTGGGTTCCTTTTTCTTAGGATTTGAATTTAATTTGCTAACATGCTCATTAATTAAGGGAAGGATGAGTTGTTGGTTAC CCTATCCTTCCAGTTTTGGGGGCTCATCTCTTATTCTCTCCTTGATTGAACAATGTTTTGAATTGTATTATTATTATGTC ACGCTAATATTTTCTTCACATGAGTCAGATACATCAAAAGATACTCTCTGCTTGAGCTGTCTTTACTAGAGTTTTTGTTT CCCTACATCTGTTTGCTGCATGCTTTGTAAGTTTTGATTGCAACTGTTTGTATTTTGTAGTTCTGAAAACTTGATGTATG TTCTTGATGAGGCTGCAGGTATATTGAATTTTATGATGCAATGTCCGTCCCAATGGCAATTGCTCTCTCTGGGCAACTTC TTCTTGGACAACCCGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTAGTTCAATCTACTGCTACTAGTGGAGCTGCT GGTGTAGCAGGACCATATGGAGCTGTGGACCGAAAACTTTATGTTGGAAACCTTCACTTCAATATGACAGAAAGTCAGTT GAGAGAGGTATTATGATATTTGCTTTCTATTGAATGTATGACATGAATTTTCATCACTGCCAGTCATCATCAGCAACATG TATGACAAAGCCAACCGATGATTTAATAAAAATATACCTTTATGAACTAACTAGATACTTTTTCTCTATACTGGTTCAGT GCATCTACTTTTGTTGTCAAACTTCTGCTGATTTGAATCTTGATTTGATAATTTGTCATTTATAAGCTTTTGATATTGCT TCCCTTCAGATTTTTGAGCCATTTGGTCCCGTGGAGGTTGTACAACTGCCTCTTGACCTGGAGACTGGACATTGCAAGGG GTTTGGGTTTATTCAAGTTCGTTGCTAATGCTTAACTTTGAAAGTTTTCTTTCTGATGATATTTCTGTTACTTAGCTTTT CGTATGTTAATTCGTGGACAGTTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGACATTGC TGGAAGAACTATTAAGGTAAAAAAATAAAATTGCGTGGGTCAGTTTGTTTCTCACTTTGCTTTTATATTTTGTTTGTAAT TAATGTTGTTTATCAAACACAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGACACAACTGCAAAATCTGCAGACT TTGATGATGATGAAGGTGGATTGGTAAGCACCAATGTTCTGAAAACCAGACCGGTCATCAAAGCCATCTCTGAAAACCGG ACTAAGCACACTTATAAATGAAATATATATCTCCTCATTTATTAAGCTTTTTAGGCTTGATTGACGAAGCTTTGTTTATT TCAATATTACTTTATTAATTATACACTCTAGCTTTAAACGTTGCAGTTGGATGAGAAGATTATTACTATTTGATAGATAG TTGTATTGAAGTTTATGTTTATTGAGTGTTCACTATTTCCGCTCCTTTTCTTTATTGGGTAACTTTATATTGAGAAGGCA TTACATAAGTGAAGATGTCAAATAAAACAAATACTAGTGAATAATGATATCTTATGCATTTCCCAATTCACTGGACTTAG GTCAGACATTACTTGCAACATTCCCTATTTCACTCTTCCCTGATCTGGTTCAAAATACAAACTAAACTATTTCTGCTTTC ATATTTTATGCAGCCAGAAACTGCAATTTTTCCCTTATCCTGGGCAGGGTGGTAGTAGATAAGGATTTGCCAATCCGCTA CGATCTCTCTTCCTTCCTCGTTTCTGTTTTTTATAATGACTATATCATTAATCTATTGTCTTCTTAGTAATGATTTTCTT GCTCGTTTATTGTGCTTTTTTCTATACACAGGCTTTAAATGCCCAATCAAGAGCGTTGCTTATGCAGAAGCTGGATCGTT CAGGCATTGCTGCAAGGTTTATCTCAATATTTTCTCTTTTATTCTGTGAATTCATCAATTATCTTAATGGATTCCAAACA CTGCAGCATTGGTATGCCCACTGTAAATGGATCCGCTCCTGCTCAACAGGCAAGCTTGCCAATTGGTAATCCAGGAATAA TACCAGTACCAACTCTCCCAACACAAATTATGCCTACCCAAGTGGCTGAACCTGTTGGTAACCCGAGCGAATGCTTACTG TTGAAGAATATGTTTGATCCAACCACAGAGGTTAGGATTACCTGGTTGATTATAATTATATCATATGTTTCATTTAATAG AACTAAATATCAAATGTTACCATATGCAGACAGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAGTGT TCTAAATTTGGACGGGTTAAGCATATCTATGTCGACAAGTAAGTTCATGAACGTGTAGATTCATCCTTGGATCTTCCATT CATTCTTTGTTATTTATTTATTTTTTCATTTTCTTTCCTTTGTGCATACTCGTCAGTTTTTAATCGATTCATCTTTTATG CAGAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGATACGGTGGAAGCAGCAAGTGCGGCTCAACGTGCTATGCACACGA GATGGTTTGCACGCAGATTGATTTCAGCTATCTACATGGTAAGTGTTTGTGCTGAGTTCCCTGCTTACATTTTTTATCCT TGACTTCAGTTTTGCAAATTTAACTGGAATAAATTATAGTTAAAATCACAGTGA
CDS sequence (LotjaGi1g1v0314500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTTCGACGAGTACGATTACTTGGAGAAGACAGTGGAGGAGCAAGAGGATAGAGACTCCAGCAAGGAGAAGAAGAA CGAGAGCGGCGACAAGACCGAACGGAGCTACCGGAAGCGCGAGATCGACGACGACGCCGCCGATGACCGGAAGAGCAAGA GGTCCAGGGGAGACGACGAAAATGGCTCCAGAAAGGATAGGGATCGTGATGAACGTGACAAGGAGCGCCATAGAAGTAGC AGAGATAGGGATAGGGATAGGGATGATAGAGACAGGGGCAGGGAGAAGGAGAAGGAGAGAGACAGGGAGAAAGATAGGGA GCGGAGAGAAAGGGACAAAGAGAAGGAGAAGGATAGGGAGAGGGAGAGAGACAGAGAGAAAAAGGAGAGGGAGAAGGAGA AAGAGAGGGAGAGAGAACGGGAGGAGAGAGAGAGGTCCAGGAGGAGCAGGAGTCATTCTGTGCGAGATAGAGAAAAAGAA CGCGATTTCGAATCTAGAGATGCCAGGAGATTTAGGGATAAAAAAGATGCCGCGGAGCCTGAGGCAGATCCAGAAAGGGA TCAGAGAACTGTTTTTGCCTACCAGATGCCCTTAAAGGCAACCGAAAGGGATGTTTATGAATTCTTCTCAAAAGCTGGCA AGGTGAGGGATGTCCGTCTTATCATGGATAGGAATTCCAGACGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGCA ATGTCCGTCCCAATGGCAATTGCTCTCTCTGGGCAACTTCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAGGCTGA AAAGAACCTAGTTCAATCTACTGCTACTAGTGGAGCTGCTGGTGTAGCAGGACCATATGGAGCTGTGGACCGAAAACTTT ATGTTGGAAACCTTCACTTCAATATGACAGAAAGTCAGTTGAGAGAGATTTTTGAGCCATTTGGTCCCGTGGAGGTTGTA CAACTGCCTCTTGACCTGGAGACTGGACATTGCAAGGGGTTTGGGTTTATTCAATTTGCCCATCTTGAGCATGCCAAGGC TGCTCAGAGTTTAAATGGAAAATTGGACATTGCTGGAAGAACTATTAAGGTTTCATCTGTAACAGATCATGTTGGAAGCC AAGACACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCTTTAAATGCCCAATCAAGAGCGTTGCTT ATGCAGAAGCTGGATCGTTCAGGCATTGCTGCAAGCATTGGTATGCCCACTGTAAATGGATCCGCTCCTGCTCAACAGGC AAGCTTGCCAATTGGTAATCCAGGAATAATACCAGTACCAACTCTCCCAACACAAATTATGCCTACCCAAGTGGCTGAAC CTGTTGGTAACCCGAGCGAATGCTTACTGTTGAAGAATATGTTTGATCCAACCACAGAGACAGAACCAGATTTTGATCTA GACATTAAAGAGGATGTAGAAGAAGAGTGTTCTAAATTTGGACGGGTTAAGCATATCTATGTCGACAAAAGAAGTGCAGG TTTTGTGTATTTGCAGTTTGATACGGTGGAAGCAGCAAGTGCGGCTCAACGTGCTATGCACACGAGATGGTTTGCACGCA GATTGATTTCAGCTATCTACATGTTTTGCAAATTTAACTGGAATAAATTATAG
Protein sequence (LotjaGi1g1v0314500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDFDEYDYLEKTVEEQEDRDSSKEKKNESGDKTERSYRKREIDDDAADDRKSKRSRGDDENGSRKDRDRDERDKERHRSS RDRDRDRDDRDRGREKEKERDREKDRERRERDKEKEKDRERERDREKKEREKEKEREREREERERSRRSRSHSVRDREKE RDFESRDARRFRDKKDAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDA MSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTATSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEVV QLPLDLETGHCKGFGFIQFAHLEHAKAAQSLNGKLDIAGRTIKVSSVTDHVGSQDTTAKSADFDDDEGGLALNAQSRALL MQKLDRSGIAASIGMPTVNGSAPAQQASLPIGNPGIIPVPTLPTQIMPTQVAEPVGNPSECLLLKNMFDPTTETEPDFDL DIKEDVEEECSKFGRVKHIYVDKRSAGFVYLQFDTVEAASAAQRAMHTRWFARRLISAIYMFCKFNWNKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 188 | 188 | - | – | |
| MobiDBLite | 12 | 188 | 177 | - | – | |
| TIGRFAM | 72 | 542 | 471 | 9.5E-166 | ||
| Gene3D | 112 | 273 | 162 | 1.1E-26 | ||
| Coils | 114 | 149 | 36 | - | – | |
| PANTHER | 156 | 540 | 385 | 2.8E-214 | – | |
| PANTHER | 156 | 540 | 385 | 2.8E-214 | – | |
| SUPERFAMILY | 182 | 271 | 90 | 6.04E-21 | ||
| ProSiteProfiles | 189 | 266 | 78 | 15.426 | ||
| CDD | 190 | 262 | 73 | 4.40096E-45 | – | |
| SMART | 190 | 262 | 73 | 6.4E-17 | ||
| Pfam | 196 | 258 | 63 | 1.4E-10 | ||
| Gene3D | 287 | 383 | 97 | 3.9E-25 | ||
| SUPERFAMILY | 291 | 540 | 250 | 6.45E-32 | ||
| ProSiteProfiles | 291 | 369 | 79 | 18.103 | ||
| SMART | 292 | 365 | 74 | 1.1E-25 | ||
| CDD | 293 | 365 | 73 | 1.11684E-32 | – | |
| Pfam | 293 | 363 | 71 | 3.3E-20 | ||
| Pfam | 384 | 477 | 94 | 1.5E-20 | ||
| Gene3D | 456 | 548 | 93 | 2.3E-29 | ||
| CDD | 459 | 541 | 83 | 1.12249E-37 | – | |
| SMART | 461 | 539 | 79 | 2.2E-4 | ||
| Pfam | 483 | 536 | 54 | 8.1E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi1g1v0314500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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