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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0317000 |
| Transcript ID | LotjaGi1g1v0317000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT5G24320.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c; TrEMBL-Plants: tr|I1JY39|I1JY39_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0317000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76407071..76413657) extracted from Lotus japonicus Gifu genome v1.2.
TTTGAATTTCACCGTAATTTTTGAACGAGTTTCCAAACACGACGCAATCAATAGGCTGAAGAAAAGTGTGATTGAGAGCT TGTGACAGTGGAGGCAGGTTTTGGAAGGTTCGATGGGTGCAAAGAGCTGACAATGATGTATACTATATTACTATGATCCA TCTTATCAGATATATACTTTCCCTTTCCTCTTCTTTCACTGATTTTTCCTTTTCTAAAACAACTCATGTCAATCACGCAC CTTCATCCATAATATTCCATTCTCAGCTACCCCTTCACACAACACACAACAAATCCTCAACAAACAAACTTGAGAAAGAA GAAGAAGCTATTACTCAATTCATCAAGAGCTTAATCAATGGGGTTTATGATGATGAGTAGAAGAAGAGTCATTTGTTTCT CTCTCTCTGTTAACTAGTTAGTTTTTCCAACCGAGTCACGTGAGTTTCTTTCTCTTGTTGATGAAAAAATCCACTCAAAA GGACAATCTAGCCCGGGTGTTGAAAGAAGTTTCTTTTCTTTTTTCCCCTTTTTGCAGAAAAAGGGATTGGCTTTCAGAGA AACTGATAGCTCGGGGTGATAGAAAGGGGAAAGAAGGAAAGTTCCTTTCCATGTCATAAACCATAGAACCCAAGGTGTGT TACACATATAAATTACTCTCTCTTTTCCTTTGTCTCTTGCTATGTACCCATTTTTCTCATCTCATTCAAATTTTCTTCAC ACACACACACAACAACAAGACACACACACTCCACTCCCTTTTGATTAAATGCCATCAACCGAGTCCATATCAAACCCATA ACACAACACCACACCACACAAAGTTCAGAGGCTAGTAGCTACTAGCTACTAGTATAGCAATAGCACCTTACCTTGCCACA CCAATAACAGCACCTCATTAATGGCGCAAGCAAAACACTGCATTGAAAATCGGGGGTCCCAAGAAATTTAAATTTCTGAA CTGCAATTGCAGCAGCAGGGGAAGAGAGAAGAAACAAGAGAGAGTCGGTGTATAAATTTTTTCTTGCCTGTAATAAGAAC CCCTACTATGGTTTAAAGTGGATCCCTATCACTCTTAGGCCTTGTAACACCCTTCGTCTCATCGCTTTCTCTAGCAACAC TTTAAGGGTATTTCCATAGCTCCAGTACTAGATGTTGTTGTGCCTATCACTACTTACTACTACTACTAACACCACCACCA CTACCACCACCATTTTTTTTACTTCAACCATTAATGCGCCTTAAATCAATGCTAGAAATCATCAATCATTTAATAACATC ATTAACACCAGCTTTTAATTCCCTTCACCCAACAAATGCAAAAAGGAAAAAAAAAACCAGCAAAGCCAAAATTGAAAAAA ATTAAAATGACCCTTTTGGATTTTCTTAGCTAAACTTGATCAAGTTTCTGTTTTTATGATTCTTCATTGACTTAGTTATG ATCCCAGGTTGTAAATTTGATTTGGGGTTTTCATGAATTAGGTCTTTTTCCCTTGAAATGGAAATGCTTTTTTAAAAATT CTCTGCTTTTTGTCTCTTCAGTTTGAATGTAATAGTACTATTTTAACTAGTTATTACATGCTGAAAATCTTAAATTTGTT GTGTCTTGATTTGATTAATTAGTTTAATGATGTTGTCTGATTCATAGGTTTAAATTGTCTCTCACTCTCTCTCTCTCTCT CTCTTTCATTTTCACAGAGACAATGATGGGTGGGGATTCTTACAAGAAGAAAGAAGAAGCATGATGAAGAGAAGGGTGTA GAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGGTGGTTGCTGCTGTGCACAGCGTCTTGTTTCTCGG GCCGCGCCGCTCGTGTGTGCGCGCGCGCCAGCCTCTTGTTGTTGCAGTTTCTTCTTGTTCTTCTTCATTCTTCTTCTGCA ATCCCAAAACCCAAATCTCGAGGTTGTGAGATTGACTGACCCTTTTTGCTGGTTGGTTTTCTGGGTGACACACGCCCTTC TTTCCTTCGGTTCACTGCACTTGATCCTGTTTTGTATGACCCTTGACTCGTTTCTTTGGCCATAATAACTGGAGGGTCGG TGGTTGATGTTGAAAATTTTAGTTCTTTTGCTTAATTTACAAGACGGGTATTGTTAAAAAGCTCTCAGCTAAGTGTTTCT GATTTGGAAAAAATTTGGGTTATTCTAGTGTGTGTATTGGGGTTTGGGGAATAGTTTATTGTTGTGATAATTTATTTAAG TATTGGGATCCTGTTGAGGGTTTGTTCCAACATGCAAACAAGTGTTGTCATTGGTTGTCTTCTTGGGCTGGCGGTTGGTT CTTCCTACTTGGTCCCTGCTAACAACATTTTAGTTTAGTCCCTGCTAACAACATTTTATATTGCTTTGAGTTTTGCATAA TCAGTGAGAGAAACAAGGTCCGTTGATTTTGGCTTGGTTTGGTATTTAAGGTGTTGTTGCTGAGCAGAGAATTTGATAAT TAGTAGGGGAAAGAAAGTGTTGGAAAGTGACATTCTTTTCTTTTGGTTCATGTGGAAGTTTGTCTCTGAGTAGTACAAGA TATGCTGAACTCTGATGATGGAGATAGTGATGTGTTCTTTGACTCTGTGGATTGTCTGCCACCTCCCCAAGAGTCTCTTT TGACACCACAGCAACAACAACAGGAGTTTGGGTATGAGATTTGGGTGAATGAGCCTCTCAGTGTGAAGGAAAGAAAGGAA AGGTTTCTAAGAGGGATGGGTTTGGTTGATGCTAGTTCTGAGGTTAGTTCTCAAGAGGAGATTCTGAGCTGTAGTACCTC ATCACTGAGTTTAGAATTGGAGAGGATCAGGGATTCTAGTGGAGCTGTCTCAAATGATTGTATTTTACCAGCTGAACAAG TTCCTGAAAAATTGGCTGCCTCAGGGAGGGAAGGAACTTCTGAAACCTGCAGTGAAGATAAAGCAGATGCAAATTTTCAA GGGAGGGTGTGTGAGCTTTCTTATTCTGATCAAGAGCTCAGAAATAGAGAAGCTGAGGCTCTTGAAGAATTGCAGGATAC TGATATGAGTAAGAAGAAGAAGAAAAACTGGTGGAAGCATTTTGTGAACAGCATGAAACGCGGAGGAGGGAAATTCAGAT CAAAGTTGAATGTAGGGGCTAGTAAAACGCGCAGGATAAATGTGAGGCAGAATAAAAAGAGGTGGATGGAGTTCAGTGCA CTGTATCTTGGACAAGAGATAAGAGCGCACAAAGGCCTAATTTGGACTATGAAGTTTAGTCCCAATGGCCAGTATCTAGC TAGTGGAGGTGAAGATGGTGTAATCCGCGTATGGCGTGTAATGTCTCTGAATGCGTCAAGTATATGCTTCACTGCGAGAG ATAGTGCAGCAAGCAAAGTCAAGCATGACATCTCTAGTTCTCAGAAGAAACCCTCTAACCAATCCTTCATTGTTCTTCCA AATAAGATTTTCACAATCGAGGAATCCCCACTGCAAGAATTTTATGGTCATTCCAGCGATGTAATGGATTTGGCTTGGTC TAGTTCAGATGTAAGTTTAACTTGCAGAAATTTGTTCGTTTTTGTCCACTAACTATGTGATAAGTTCTATTGGTTCTGAT TGCAACTTCAATGAAATCTGATCTAAAGTACCTGGTGCAGATTCTCCTTTCCTCTTCTATGGATAAAACTGTACGCTTGT GGAAAATTGGTTGCAATCAATGTCAAAGAGTTTTCCGTCACAAAGATTATGGTAAGTATGGTACTTACATGGCTTTGAAT TTTCAATTTTGGTGATCATCTTTTACTTATTAATAGATTTTCAATATATGCTTTATTGTTTTTCATAATTTGCTGTAAAG TGAAATATGAACTTATCTTTGTCCTACAAGGATATTCATAATTGTTTCTCTTTTTTAAATGGAAGCAGTGACATGCATTC AATTCAATCCCGTTGATGAAAATTACTTCATCAGTGGCTCCATAGATGGTAAAGTCCGAATATGGGGTGTGCATGAAGAG CGAGTTGTTGACTGGGCAGACATTCGAGATGTCATAAGTGCTATAAGTTACCAGCCAGATGGAAAAGTATGTTATGAATA ACTGACTAAATCTTTTAATGATTCTATACCTTTTTACTCATCACAATTCTGGTAACTTTTTCCTGCAAGATTTTGAACAT TGACTGTTTATTCATGCAGGGGTTTGTAGTCGGTTCCCTTTCTGGAACTTGCCGATTTTATGTTGCTTCAGGTATTTACT TGCTGATTACCAATTACTTTAGTCATGACTGATGAACACCCCCCTCCCCAAAAAAAAAGAGTAAAACAAAAAAGGAGAAT GACATGAATTAAAATGTGTGCCTAAATTGGGTTTCTAATGGTTTAGGCAAACATTTCCAGCTTGAGGGGAAGATTCACCT CAATGAAAAGAAGAGAACATCTGGCAACAAGATTACTGGCATTCAGGTTTTATTCTTGAAATTCCTCTCTGCTAAGCTGT TAATACTTTATACTTCCTTTATTAACATCAGACCGCCCTTATTCTGTTGCAGTTTTCCCAGAAAAACCAACGGAGACTTA TGATCACATCAGAAGATTCTAAAATTAGAATATTGGAAGGCGTTGAACTCGTCCAGACATATAAAGGTAGAAATCTAAGT TAAAGTACTGATCCATTAACGAGAGAATACTATTATACTAGGATTGCTTTCCAATTTCACTTCGAGTTAATGTTTAAGAT TTTTTCTGGACTTTTCACTTTTGTTTGGAGGCTGATTAATTTTGATCTCATGGAATGTTATGTCAATTGTGATTGTTTTA TTGGCATGGCAAAAAGATCTTATGTTAGCATAGTCTTTGTGGCTTTTGAGCTGGGCATGGTGATGTTTCCTTAAATGTTC TCTTGTTTTGCTAAGTTTAAATCATAGTCGTTTTTCCTCTGTTCTTTTATTGTTTTTTTTTGTAAGATGAGTCTCTAGCA ATGAACAGGGTATAATTGTTGAATTTATCTTAGTTTTCAAGAGTTGCTTGGTATGGCAGTATGATCTGGTATCCTACTGT TGCATACTGCTATTTTTAGACTACATTCTAGAAATTGGAAAACATCTCAACTGTAACCTCGCTTCCTTACATGCATATGA AAAGTAAATGCATATCAAATACAGTAAAAAGTCTTGTACTCTCCATTTATATGCATGGATAGGTAATTCTAGGTTCTGAT GAATTCCTGAAATTAAACTAGTTCAGTTAGGCATTTTACCTGCAAATCTAATTTTATTAGTAAACATAATCTTCTAATCT GCAGATATGATGGGCCTCATTATTTTGGTTCCTTCCAATGTAGTATGCATGCTAGTTTTTATGTGTGAATATGTATTCTT ATCTGTTCTTTGACTTATTTGTGGTATTTTTGAGAAACCGACTTGAGTCTGTTTGGATGCGTACCAAAAAGCACTAATTG GAGCTTATCCAGTGTTTTCTAGTAGATTAGCACTTGCTCTTTAGTTCTTATCCAAATGGGGTGAAATCTAAGATAATACT TGTTTCCGCTATCTGCATTCTTTAATCATAGTTTACATGTAATAATCTAATGGCTGATCAAACTACTATTTGCAGGCCTT CCAAAATCAGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGGAAACACATAATTTCGGTTGGAGAGGACTCTCGCGT GTATATTTGGAACTTCAACGACATGGGAAATGCCTCTTCCAAACAGACCAAATCTGAGTGCTCTTGTGAGCACTTCAGCT CCGAGGGCGTAACCGTTGCAATACCTTGGGCAGGCATGAATGCAGAATCCGGTGATGACTGCGCTCACTGTTCTTCAGAA AGACAACACCAATTAGAGGCTGCTCCCGGGTTTAGAGAGTCGGAACGTTTCTCTTTCGGTAGTTGGTTCTCCATTGATGG TTCATGCAGCAGAGGTGCCATGACATGGCCCGAGGAGAAGCTTCCGAGTTGGGACATACCTCTTACCGAAGTTGAATTCG ATCACCAGCAGCTATATCTCAATGATCAAGACAATTGGGTACCAGAAACATGGGGACAATCAATAGTGGCAGCTTCTTTT GATGGAACCATCAAGACATTTCACAACTTTGGATTGCCTGTGAGGCTTTAGAACCCTGCCATGGCTCTGTTGGTGCAGAA TAGCTGGGTTACTTGCCCAAATTGAAAACTTCATCAAGAAGTTTCAGATCACAACCTTGGATTCATTGCATTGCAAGAAA TATGGTCATTGCTAGATTCATGTGAGATGTCAAACCTTCTGACATGTTTTGCAAATTGATATGCTACTAATTTAAGTGGT CTTGTAGAGACAGACCACTAGAATCCTAAGTTTTGTTTTGGTGGCATTTTTTTTGTGAATATTGGTTAACTTATAGGTAC AGATTATTTTTATTTAGAAAACAAAAGAAAAAAAATTGAAGTTTTGTTCCAATATGAGCTTTAGTGGTTTATGCACTTGC CTTTACTATCGATAACTTGTTAGCTTCAGCTGTAGCCAGTTTTGGCGTATTGAATAAAAAATGGTATGATCAAAAGGTGC ATGATAAATGTGGTAGTATGTAAGAAG
CDS sequence (LotjaGi1g1v0317000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGAACTCTGATGATGGAGATAGTGATGTGTTCTTTGACTCTGTGGATTGTCTGCCACCTCCCCAAGAGTCTCTTTT GACACCACAGCAACAACAACAGGAGTTTGGGTATGAGATTTGGGTGAATGAGCCTCTCAGTGTGAAGGAAAGAAAGGAAA GGTTTCTAAGAGGGATGGGTTTGGTTGATGCTAGTTCTGAGGTTAGTTCTCAAGAGGAGATTCTGAGCTGTAGTACCTCA TCACTGAGTTTAGAATTGGAGAGGATCAGGGATTCTAGTGGAGCTGTCTCAAATGATTGTATTTTACCAGCTGAACAAGT TCCTGAAAAATTGGCTGCCTCAGGGAGGGAAGGAACTTCTGAAACCTGCAGTGAAGATAAAGCAGATGCAAATTTTCAAG GGAGGGTGTGTGAGCTTTCTTATTCTGATCAAGAGCTCAGAAATAGAGAAGCTGAGGCTCTTGAAGAATTGCAGGATACT GATATGAGTAAGAAGAAGAAGAAAAACTGGTGGAAGCATTTTGTGAACAGCATGAAACGCGGAGGAGGGAAATTCAGATC AAAGTTGAATGTAGGGGCTAGTAAAACGCGCAGGATAAATGTGAGGCAGAATAAAAAGAGGTGGATGGAGTTCAGTGCAC TGTATCTTGGACAAGAGATAAGAGCGCACAAAGGCCTAATTTGGACTATGAAGTTTAGTCCCAATGGCCAGTATCTAGCT AGTGGAGGTGAAGATGGTGTAATCCGCGTATGGCGTGTAATGTCTCTGAATGCGTCAAGTATATGCTTCACTGCGAGAGA TAGTGCAGCAAGCAAAGTCAAGCATGACATCTCTAGTTCTCAGAAGAAACCCTCTAACCAATCCTTCATTGTTCTTCCAA ATAAGATTTTCACAATCGAGGAATCCCCACTGCAAGAATTTTATGGTCATTCCAGCGATGTAATGGATTTGGCTTGGTCT AGTTCAGATATTCTCCTTTCCTCTTCTATGGATAAAACTGTACGCTTGTGGAAAATTGGTTGCAATCAATGTCAAAGAGT TTTCCGTCACAAAGATTATGTGACATGCATTCAATTCAATCCCGTTGATGAAAATTACTTCATCAGTGGCTCCATAGATG GTAAAGTCCGAATATGGGGTGTGCATGAAGAGCGAGTTGTTGACTGGGCAGACATTCGAGATGTCATAAGTGCTATAAGT TACCAGCCAGATGGAAAAGGGTTTGTAGTCGGTTCCCTTTCTGGAACTTGCCGATTTTATGTTGCTTCAGGCAAACATTT CCAGCTTGAGGGGAAGATTCACCTCAATGAAAAGAAGAGAACATCTGGCAACAAGATTACTGGCATTCAGTTTTCCCAGA AAAACCAACGGAGACTTATGATCACATCAGAAGATTCTAAAATTAGAATATTGGAAGGCGTTGAACTCGTCCAGACATAT AAAGGCCTTCCAAAATCAGGAAGTCAGATGTCTGGTTCATTTACATCAAGTGGGAAACACATAATTTCGGTTGGAGAGGA CTCTCGCGTGTATATTTGGAACTTCAACGACATGGGAAATGCCTCTTCCAAACAGACCAAATCTGAGTGCTCTTGTGAGC ACTTCAGCTCCGAGGGCGTAACCGTTGCAATACCTTGGGCAGGCATGAATGCAGAATCCGGTGATGACTGCGCTCACTGT TCTTCAGAAAGACAACACCAATTAGAGGCTGCTCCCGGGTTTAGAGAGTCGGAACGTTTCTCTTTCGGTAGTTGGTTCTC CATTGATGGTTCATGCAGCAGAGGTGCCATGACATGGCCCGAGGAGAAGCTTCCGAGTTGGGACATACCTCTTACCGAAG TTGAATTCGATCACCAGCAGCTATATCTCAATGATCAAGACAATTGGGTACCAGAAACATGGGGACAATCAATAGTGGCA GCTTCTTTTGATGGAACCATCAAGACATTTCACAACTTTGGATTGCCTGTGAGGCTTTAG
Protein sequence (LotjaGi1g1v0317000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNSDDGDSDVFFDSVDCLPPPQESLLTPQQQQQEFGYEIWVNEPLSVKERKERFLRGMGLVDASSEVSSQEEILSCSTS SLSLELERIRDSSGAVSNDCILPAEQVPEKLAASGREGTSETCSEDKADANFQGRVCELSYSDQELRNREAEALEELQDT DMSKKKKKNWWKHFVNSMKRGGGKFRSKLNVGASKTRRINVRQNKKRWMEFSALYLGQEIRAHKGLIWTMKFSPNGQYLA SGGEDGVIRVWRVMSLNASSICFTARDSAASKVKHDISSSQKKPSNQSFIVLPNKIFTIEESPLQEFYGHSSDVMDLAWS SSDILLSSSMDKTVRLWKIGCNQCQRVFRHKDYVTCIQFNPVDENYFISGSIDGKVRIWGVHEERVVDWADIRDVISAIS YQPDGKGFVVGSLSGTCRFYVASGKHFQLEGKIHLNEKKRTSGNKITGIQFSQKNQRRLMITSEDSKIRILEGVELVQTY KGLPKSGSQMSGSFTSSGKHIISVGEDSRVYIWNFNDMGNASSKQTKSECSCEHFSSEGVTVAIPWAGMNAESGDDCAHC SSERQHQLEAAPGFRESERFSFGSWFSIDGSCSRGAMTWPEEKLPSWDIPLTEVEFDHQQLYLNDQDNWVPETWGQSIVA ASFDGTIKTFHNFGLPVRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 657 | 657 | 3.8E-263 | – | |
| PANTHER | 1 | 657 | 657 | 3.8E-263 | ||
| SMART | 213 | 252 | 40 | 1.7E-8 | ||
| SUPERFAMILY | 214 | 648 | 435 | 7.33E-53 | ||
| Pfam | 219 | 251 | 33 | 1.2E-7 | ||
| ProSiteProfiles | 220 | 261 | 42 | 15.287 | ||
| ProSiteProfiles | 220 | 389 | 170 | 19.116 | ||
| PRINTS | 239 | 253 | 15 | 2.4E-6 | ||
| SMART | 300 | 338 | 39 | 2.3E-8 | ||
| Pfam | 302 | 338 | 37 | 4.7E-7 | ||
| ProSiteProfiles | 307 | 339 | 33 | 12.747 | ||
| PRINTS | 325 | 339 | 15 | 2.4E-6 | ||
| SMART | 341 | 380 | 40 | 1.2E-8 | ||
| Pfam | 343 | 379 | 37 | 4.0E-5 | ||
| ProSiteProfiles | 347 | 389 | 43 | 11.945 | ||
| PRINTS | 367 | 381 | 15 | 2.4E-6 | ||
| SMART | 382 | 421 | 40 | 2.8 | ||
| SMART | 426 | 472 | 47 | 40.0 | ||
| SMART | 473 | 514 | 42 | 0.77 | ||
| ProSitePatterns | 501 | 515 | 15 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0317000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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