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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0317100 |
| Transcript ID | LotjaGi1g1v0317100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/FYVE/PHD zinc finger protein, putative; TAIR: AT1G43770.2 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|O91734|POLG_EC01F Genome polyprotein; TrEMBL-Plants: tr|K7KLI5|K7KLI5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0317100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:76418301..76423768) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGAAGATGATAGAAAGTGCATGCCATTATGCCATGCTTAATACTCAATAGTCACTAGCGTTTGGCGAACTCTGTACT AGTGTACAATCAATTTTCCGGCGAAGGAGCGGAGAGAAAGCGGTTGGAGCAACCACCATTTGGGGAACTTGTGACGGAGA TTCCTCAATCTTCCGCCGTGTACGATTCACCACCACCTGCTACATCGCGCATCGTCGACGTCAAAATGGTACACCTCACT CACTTCATTTCGTTATCACATTACACTGTTCTTCCTATTGTTTACTTCTCTTTGCTTCCAATCGTTTTCACTGTGCGTTG TGAGCTCCTTTCTCTTCAATTTTGACTTGTAAACAGTTTTGGAATCTGGGGTTACTGTGATTTTGTTTACGGGATTGTCG TAGTCAGAGTTCAAAATGCTTGATTAGGTTCTTCTTTTGTAAGACAAGAAGCACTGTTCATGCATAAGGAAACCAAGGCA TGTTTGGAAAAAGAGGGACCAAATTGTCGATAATGCAATATTAAATTACAGAAATCCTAAAACAGATTATTACAACTTTT TCGCCCTTTGAAACCAAGTCATTTGGGTGTGTTTGGGTAAACAGTTTAATGAAGTGCTTATTGTTGTCATAAGTGCTTTT CCTATAAGCTAATTTGATGAAATAAGCTCAAAATAGGGTATATGTAGTTATAAGCGGCTATTCATAAGCTGATTTGAGTA ACTTACTTACAAAATTAAGCTCAAAACTGCTAATTAGTAGGTCATAAGCAATTTACATAAGTTGTCTCGAGCACTTGTAT AGATGCCTGTGATAGGATAAGTTCAAATGAACTCTTCCAAACGGGGCCGTAAACTATTAAAAACCGCTCAGTCGCCCAAA TGTATCTCTTGTCTTACCCTACTCAGTACTCATTAGTTGCCTTTTTTGTTTTTAATCTTTTACAATACCAATTATTTTCG ACCCTCAAAGTGTTCCCCTTTTGTTTCCATTTGTATTCTGTTATATTAATTTGCAGGTAACCTGTAGTTTCGTCAACTAA GTTCCTAAAGTTTAAAAACTTAAAATCATGCCTTTCTAGTTTAATTTTTGAGTAAATGTTTAACTTCTGTTAAGTGTTGC TGGTGTAGTATTTCTAATGTGGCAGTCTCTGCCTGATAGAGGAAAATCCAAGTGAAAGTTGAGAATTCTTATTGCCCAAT CGATCAACTCCTTTACCATTTTCTAGTAATTTTGGGTTGGTGATAGCAAGAGCCACAAAGCTATTATTAATGAGACATCT AACTGTCCTGTACAAATATCATAAAGCTTTCTATGCTTACAGTTAATGCTGAATGGAAATGAGTTATACAATTAGTGGAA AAGTATTTGTAGACACCCCTCATGGGGTTATAAACCCCAAATAGAGAGAAATGAAAGATGTGATAGGTGATGCGATTTGA TACAGAGAGATAGATAGGAAAAATAAGGTGGAGGTAGTGTTCTACAAATAATGGTTGATTCATCTTAGGCATGACAATAA GCACTGGGCTGCTGTGTTTTGTGATGAGATGGATAACTTGTCATATAACTATTCCTTAGTTGTTTTACCTTCAATTGTAG TTACTATATCCTAAGATGACTTGCTATCTAACTCAGATTTAAGTTCAGAGAGAACAGAGAACTAAACCCTCTCACTAGTC ACTGACTCACTCCTATTTTCTACGAAGGAAGGAAGTGACATTGATAGTTATTTGTTCACCAATGTATCAATCTGATGGGG TGCAAATTTTGGGTACTAAGAACCAGCTCATTGATACTTGTTCCGTCGATCTTCTTTGGCCTCGAAGTAGATAGTGGAAG TGTAAAACTATGTTTCCATTTATGCTCTCCAACAATTACAAGCGTTCCTCTCTTTGAGATATTTATGGTTGGCGTCAAAA ATTAAAATTAAAATACTTTCTGAAGCTCTTGGGTTAGAGGAGTAAAATTAATGAAAAGAACTGCAAAAGCACTGCCCAAA ATTGAAGCCAGAAAACTAAATTGTAGCCTATTTTCCCTGTTAATGTCTGAGAATGAACATGTAGAAATAATGCATATTGG GTTAGATATACTATACATAACATAATTTTGACATTGTTAGCACTCAAGGATTTAGCTTTAACATTTGAGAATTATAAGGA TTTAATTAACAGCTTTAAACTTTTGGGAAGGATCTATACTAATTTAACCTTTGTATTCTGCTAATTACCTAAATGTCAAT AGTTTCTTTGATACATCTTCAACAATAAAATGTATTTCCAAACTTTATTATTTAAAGCTTTAGTTATAATTATTAAAACT TTTGAAACACTGTTGAAATTTTCCATTTTATCTAACCCTCTAAGTTTATTTGTCAGCCAGACAAATCTGTTCAATCTTTA CAAGCATTGTTTCAATGATCTTTACAGTCGAATATCTGTCTAATATGTGGTGATGAAGGAGATGTGAAGCGCCTCATGTT CTGTGTCATGTGTAAAGCTTGTGCAGTGCATAGGTATGTGTCTGCAATCTACATTGAGTTGTCATTCTGACTATTCAAAT CATTGGCAATTGACAATATTTTAATTTTGGGTATGAATAATTGGCTAGAAATCTATTTTGCTGGCATTGGATTTTGAGAC CTATATAATTTGCTCAGCCAAAGGTCTCTTGTCTATAATTTATCTAAAATGTAGATTGATAGTGGAATTTAAGTTTTGAC GTCTTTCTAATTAGCTTAGACTATATGGTTTGTAGTTTATTGCATTAGCAAATATAATATGGAATAAAATTACTTTGATA TATATCCGTCTCTTTAATATATAAATCATATATCCAAACAACTAGGATATGGTTAGTGTATAATTGTTAAGATTTATATT CCTTTACTCACTTTGTTGTCTTACTACAGATACAAGTGTGTGTAATTGGTCTCACATTCTAATATAAGGTACAATGTGTT CTTTGAAATTAAATAAGAGAATTTATATTCTTACAAAATAATTTGATGGAGAATACTATGTTTAGTGGAAAATAGAGATA AATAGGATTTATATGTTCAGTAGAAAATAGAGATAATAGGCTTGAATTGAATATTTGTGTATCTGTTCAGGCATCACAAG GATATAGCTATATTTCAAATATAGTTATATTATATTAAATTTAATTACAATGGTAATTATAAGGATTAAATTAACTCCTA AGAATGCCCCTTAATTAGATGACTAACGGATTAATTGAGTGGGTCATTGCTTTTGCCACCACAAAAATTCTTCTTGCACC ATAAAATAGCCTCTAGAAATTAATTTCTTTGGCTTCCGTAAATTAATTTCCTGAAGCTATTGTGAGGTGTGGGGAGAAAT TCTCACTGGCAAAAGCAACACCCATTGACTGTACACAAACACTACAGTTGGCTTAAGAACTTGGTAAAAGTATCTGTCAG ATTATCATAACTGACAGCAAATTAGAAATTTCTCAAGAGTAATTTCCCCCTAATAAGTCAACCAGCATTACCAAATTTCT CTGCCCTTCATCTAATTACTAGATTGGAGGCCAATATGTATAGAATTATTGTAGATCCACAAATGAGCTTCATTGCTTAT GATTCAGATTTCATTTTTTAAGTAACTAACTTAGCTGCATGAGTTCAAATGTCACAGTTCTCATTGAGTATCAGACGTTA GAAACTGCAATTTGTGAACTCTTATGGTCAAGGAATTTGTTGAAAGAGAGGTGAACATATATGTAACAAATTAGGCTACA CAGTTAATATTTGAATATAGTTATGGTCAATTAGTACCCTGATTAAGGAGCATCCTACTCTTGTAATTTGAAATTAATTT ATGCAGCACCTGTTTTTAAAATTCATTTTGTGGTCTGATTTTACCCATATTTCTCACCTACTTCAAGTAGAGAAATGAAG TTGCCTCCATATTATCCATTGTCATTACAAAAATAGGGCTAAGATGTTGAATACGTTGTTTTTTCTTGATATTTGTAAAA TATGCTTAGTAAGTAGTATATGTATTTGCAGCTATTGCCCGGACAAGTTTCACACAGAAGATGATGGAACAGTTAGTTGG AAATGTGAGGACTGTGCTCCAGATAACCCCAAATGTCTATCTGAGCAATTGAGAAAAAGCGAACGCATAAGTGATGCAAC TGAAGCTAAATATAACAGGATGAAAATGCAAAAGGAAAGTTGTGCGCCTAGAAAACTAAAGTCTGTCAGGTTTGCTGAAG ACAATGAGAATAGACAGCCAATTCTAGAAGATGAAATTGTTCCCTATGAGGAGCCTGAATCACATAAAGTTCCTTTGAGT ACTTCACCTAACGAGCAAGTACTGGAGTCTGAGAAATATGGTGACTCTGAGTCCATAATATCTAAGTGCATGTGTTGCCC GGAGATTGACAAATATAGCCATGCTCGGCCACTATGTGATCCAGTTTGGAAGTGAGTTTTTACTGTGTTCTTGTTGATGT TACTTTTTGACTTCTAGCATCTCTCCGGCCCCCTAATTGTTGGTGTAATTTTGAATAACACTGTTGAATTGGCTTTAGAG TTTAGAGGGTTATTTATGCACCTCATTTTGCTTTATAACCTCTTCTTTTTTCCTTCATAGGGGTCAATTAAGATTGAACA ATGGAACACGTTTTCTACTTGCTGCTTATATGTCAAGCAAAGCTTGCTCAAAAGTGCATTCGGCGGTAACAGGCGTCCCC AAACGACTTGATGCTGAGATGTTGTTGAGATGTGTAATTTGGCCCAAGAGTTTTGCCATGTTTCCATCAAATGCTGATAG TATTGCGCTCTATCTTTTTCCCCGGTATGAAAGGTATGGTTCTTCATAGATTATATTCTACATACTAACTAACTGGTAAT GTATTGTTGTAGATTTCCCATGATTACTGGTATTCTCTTCAATCAGGGATGAGAAGATCTTTGACGGTGTGCTGCACAAC GTAATTGAACAAGATCTTGCTCTCAGAGCAGTTGTTAACAACGTGGAGCTCCTAATTTTTTCATCACATTTATTACCTCC AGATGATAGGCGTAAGTTAAGAAACTTATGGTTTTGCTGTAAATTTTGAAAAAATATTCTATTACCTCCAGTTCAATGAC TTGTCTAATTTTCCAGGAATCTGTAAGAAGTATTATTTCTGGGGTGTTTTCAAACCAAAGCATAGGGAACCGTGAATCTC ATATCTCATTAGCTAAGAGTAAATATCTTCTCATTTTGGGAACAAAGCAGAGGATTATTGTATTACCACTTACTAGATAC ATTTTCAGTTTCTGTTACATAATTGTAATGCTAATTGTTAGCAGTTAGTAATGTTAGTTAGTGTCTAAATGAACAGTTGC CTGTTAACAGTTCAGTATGTAATTCTGTTACCAACAACAGTGTGTATGTAAGCATTCTGAATCTCTGATCAATGAGAAAT TGAGAATCAACAAGCTTTTTGATTCTGC
CDS sequence (LotjaGi1g1v0317100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGAATATCTGTCTAATATGTGGTGATGAAGGAGATGTGAAGCGCCTCATGTTCTGTGTCATGTGTAAAGCTTGTGC AGTGCATAGCTATTGCCCGGACAAGTTTCACACAGAAGATGATGGAACAGTTAGTTGGAAATGTGAGGACTGTGCTCCAG ATAACCCCAAATGTCTATCTGAGCAATTGAGAAAAAGCGAACGCATAAGTGATGCAACTGAAGCTAAATATAACAGGATG AAAATGCAAAAGGAAAGTTGTGCGCCTAGAAAACTAAAGTCTGTCAGGTTTGCTGAAGACAATGAGAATAGACAGCCAAT TCTAGAAGATGAAATTGTTCCCTATGAGGAGCCTGAATCACATAAAGTTCCTTTGAGTACTTCACCTAACGAGCAAGTAC TGGAGTCTGAGAAATATGGTGACTCTGAGTCCATAATATCTAAGTGCATGTGTTGCCCGGAGATTGACAAATATAGCCAT GCTCGGCCACTATGTGATCCAGTTTGGAAGGGTCAATTAAGATTGAACAATGGAACACGTTTTCTACTTGCTGCTTATAT GTCAAGCAAAGCTTGCTCAAAAGTGCATTCGGCGGTAACAGGCGTCCCCAAACGACTTGATGCTGAGATGTTGTTGAGAT GTGTAATTTGGCCCAAGAGTTTTGCCATGTTTCCATCAAATGCTGATAGTATTGCGCTCTATCTTTTTCCCCGGTATGAA AGGGATGAGAAGATCTTTGACGGTGTGCTGCACAACGTAATTGAACAAGATCTTGCTCTCAGAGCAGTTGTTAACAACGT GGAGCTCCTAATTTTTTCATCACATTTATTACCTCCAGATGATAGGCGAATCTGTAAGAAGTATTATTTCTGGGGTGTTT TCAAACCAAAGCATAGGGAACCGTGA
Protein sequence (LotjaGi1g1v0317100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNICLICGDEGDVKRLMFCVMCKACAVHSYCPDKFHTEDDGTVSWKCEDCAPDNPKCLSEQLRKSERISDATEAKYNRM KMQKESCAPRKLKSVRFAEDNENRQPILEDEIVPYEEPESHKVPLSTSPNEQVLESEKYGDSESIISKCMCCPEIDKYSH ARPLCDPVWKGQLRLNNGTRFLLAAYMSSKACSKVHSAVTGVPKRLDAEMLLRCVIWPKSFAMFPSNADSIALYLFPRYE RDEKIFDGVLHNVIEQDLALRAVVNNVELLIFSSHLLPPDDRRICKKYYFWGVFKPKHREP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 299 | 297 | 3.2E-111 | – | |
| PANTHER | 3 | 299 | 297 | 3.2E-111 | – | |
| SUPERFAMILY | 3 | 59 | 57 | 5.04E-5 | ||
| ProSitePatterns | 5 | 51 | 47 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0317100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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