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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0328800 |
| Transcript ID | LotjaGi1g1v0328800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Myb transcription factor; TAIR: AT4G38620.1 myb domain protein 4; Swiss-Prot: sp|P81395|MYB30_ANTMA Myb-related protein 330; TrEMBL-Plants: tr|A0A0L9UEB0|A0A0L9UEB0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0328800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78358191..78360627) extracted from Lotus japonicus Gifu genome v1.2.
ATAAGAGAAGAAATTGGGGAGAGGTATGGAAATATGACAAAGAGAGGGTAAAGGGAGGGAATAGCAAAAGAAATAAGAAT CCTGAGAGAAACATAAAAAGAAGAGCTACATCTACCTACCAACCAAATCCAGCACTAACTAAATTGCAACCACAAGTCTT TCTCACCAACTCGGTCAAATACTCTCTCTTGCATCATCACTTCTCGTCAGAAAAACAAGGTCCCCGAGTCAATTGCACCT CCTCTCCCTCTTCACCACCTCCCATTTATATTCCTTCCTTCCTTCTCACCAATTACTTTCCCCACAAATCTCACTACTCC CACTTTCTCTCTCACACACACTAACCTCAACCATGGGTAGATCTCCTTGCTGCGAGAAAGAACACACCAACAAAGGAGCT TGGACCAAAGAAGAAGATGAACGCCTCGTCAACTACATCAAGCTTCACGGTGAAGGTTGCTGGAGATCTCTTCCAAAAGC TGCTGGTAATAACTTTAAACTTTCCCATATATCGTAGGTAACTTAGCTTTAATTTCTAGATATATACAACAAATTAAAAT ATCTTACTTTATATGATTAATGGTTCACAGGGTTGCTTAGATGTGGCAAGAGTTGCAGACTCAGATGGATAAATTACCTC AGACCTGATCTTAAAAGAGGAAACTTCACTGAAGAAGAAGATGAACTTATCATCAGCCTCCACAGCTTACTTGGAAACAA GTATGAACACAACTTCAATTCCCTCCTTCTTTCAAATCTCTTATGCTCAATTAAGTCTCACACATCCTAAAAAATTATTT AATTTCTTAATTTTTGTTCTCTACTAGTCATAAAATCAAGTACTATTCTCAACATGGAACACATCTTTATATAAGCATGT TTGGAAACCTTTCATATTTATCTTTTCTCAAAAACAATTCTACAACTAAATAGCTACTCACCTAAGCTTCTCAACGGAGT TAATTTTGACTTTAGAATTGATTGTAAAAGTCTTTTCAAACATGCAATATAATTGATTCTAATTAAAAGTAGAATCAATA ATTGTTGTAAAAAGCTTCTCTGAGTAGCTTGTAGTGTGAGAATTGATGATGAGTTGATGACAAAAGAGAATTCTTCTTGT ATGATCTTCTCAAATGGGTTTTATGATTTTCCAGATGGTCTCTAATAGCTGCAAGGCTACCGGGAAGAACCGATAACGAG ATCAAGAACTACTGGAACACACACATCAAGAGAAAGCTCTATAGCCGCGGAATCGACCCACAAACCCATCGAACAATCAA CGCTTCATCAGCCACCGCTACAGCCACTACCACCACAGTTCCATCATCAGCTAATGTTGCAGACCCTCTTAAACTAACTA CCATCACCAACAAGAACATGAAAAACGACAGCAGCACCAACATCATCATCAGCAACAACAATGATAATAACATTACCAAC AACATCAGTTTTCAGTTAGTAAAGATTGGAAACGATACAGTTCACGAAGATTCAAACAGCAGCAGCGGTGTTACAATAGA AGAAGCCTCCCCTCATCATCATCAACAACTCAACTTGGAACTTTCCATTGGCCTTCCCTCTCATCAATATCAGAACCAGT TAGCTTCTTCTTCTTCCGTGAAGTTGAAACATGAGCAACAAGAAGAACCACCACGTATTAATTTGTATCAACAGTGGTGT GGGAACGTTAGTCAAGGTGCGTGCGTGTGTTACGGTCTAGGGTTTCAAACCAACCAAGCGTGTTGCTGCAGAGCCATGGC TACTGCTGCTGCTACAACAGTTACAAAAGCTGCCAATGAAGATGATATCTTTAGATTTTACAGACCCATGAATGTTTAGA ACTTTTTTAGAAGTTAATTAGTGGTAATCTCTGATCAGGCGTGTCTGAATGTGTAATATTTGCGACTGTTCCTAGTTGAC ATGGAAATAGTTTCAGAATATATCACAGAATTTTGGGCTACTTATTTCAGATGTTTCTTTGTTTAGAATTACTCCTGAAT GCATTTTGGTCCTATATTTAATTTCAATTACGTTAATTATAATTATATGCCTTTAGAATTTTTTAAAGGAAATCTTACTA AAATTCAAGAGGAAACTGACTCAGAGTACATTAGAGCGAACAATAGAGATAATAAGACCTGAAGGAACATTTTCAACCCA AACTAAATTGACAAAGGTGAAGGCATTCCTATCTGGGAAGTCTGGAGCACTATTATCGCTCCTATGAATAAATAAAGGAT CAATACGACGAAAAGAAAAAGAAATAGAACGAGAGTCACGAATAATCAAAGTTAATTAGGTAAGAAGTATCTCCAGAAAG ACGTCTCCACGGCTAAAAGAGTTGTGGACATTAATCTGTTTCACAACACAATATATACCTTAATCCCAAACTGTTGGAAA AAGACACAACTTGATTCAGACAGTACGATAGAGCGAG
CDS sequence (LotjaGi1g1v0328800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGATCTCCTTGCTGCGAGAAAGAACACACCAACAAAGGAGCTTGGACCAAAGAAGAAGATGAACGCCTCGTCAA CTACATCAAGCTTCACGGTGAAGGTTGCTGGAGATCTCTTCCAAAAGCTGCTGGGTTGCTTAGATGTGGCAAGAGTTGCA GACTCAGATGGATAAATTACCTCAGACCTGATCTTAAAAGAGGAAACTTCACTGAAGAAGAAGATGAACTTATCATCAGC CTCCACAGCTTACTTGGAAACAAATGGTCTCTAATAGCTGCAAGGCTACCGGGAAGAACCGATAACGAGATCAAGAACTA CTGGAACACACACATCAAGAGAAAGCTCTATAGCCGCGGAATCGACCCACAAACCCATCGAACAATCAACGCTTCATCAG CCACCGCTACAGCCACTACCACCACAGTTCCATCATCAGCTAATGTTGCAGACCCTCTTAAACTAACTACCATCACCAAC AAGAACATGAAAAACGACAGCAGCACCAACATCATCATCAGCAACAACAATGATAATAACATTACCAACAACATCAGTTT TCAGTTAGTAAAGATTGGAAACGATACAGTTCACGAAGATTCAAACAGCAGCAGCGGTGTTACAATAGAAGAAGCCTCCC CTCATCATCATCAACAACTCAACTTGGAACTTTCCATTGGCCTTCCCTCTCATCAATATCAGAACCAGTTAGCTTCTTCT TCTTCCGTGAAGTTGAAACATGAGCAACAAGAAGAACCACCACGTATTAATTTGTATCAACAGTGGTGTGGGAACGTTAG TCAAGGTGCGTGCGTGTGTTACGGTCTAGGGTTTCAAACCAACCAAGCGTGTTGCTGCAGAGCCATGGCTACTGCTGCTG CTACAACAGTTACAAAAGCTGCCAATGAAGATGATATCTTTAGATTTTACAGACCCATGAATGTTTAG
Protein sequence (LotjaGi1g1v0328800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRSPCCEKEHTNKGAWTKEEDERLVNYIKLHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIS LHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSRGIDPQTHRTINASSATATATTTTVPSSANVADPLKLTTITN KNMKNDSSTNIIISNNNDNNITNNISFQLVKIGNDTVHEDSNSSSGVTIEEASPHHHQQLNLELSIGLPSHQYQNQLASS SSVKLKHEQQEEPPRINLYQQWCGNVSQGACVCYGLGFQTNQACCCRAMATAAATTVTKAANEDDIFRFYRPMNV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 258 | 258 | 4.0E-93 | ||
| PANTHER | 1 | 258 | 258 | 4.0E-93 | – | |
| ProSiteProfiles | 9 | 61 | 53 | 17.855 | ||
| Gene3D | 12 | 67 | 56 | 1.3E-17 | – | |
| SUPERFAMILY | 13 | 108 | 96 | 8.27E-30 | ||
| SMART | 13 | 63 | 51 | 4.6E-14 | ||
| Pfam | 14 | 61 | 48 | 4.2E-15 | ||
| CDD | 16 | 61 | 46 | 3.19346E-11 | ||
| ProSiteProfiles | 62 | 116 | 55 | 29.298 | ||
| SMART | 66 | 114 | 49 | 4.1E-18 | ||
| Pfam | 67 | 111 | 45 | 2.8E-16 | ||
| CDD | 69 | 112 | 44 | 4.92258E-13 | ||
| Gene3D | 69 | 116 | 48 | 8.8E-22 | – | |
| MobiDBLite | 198 | 218 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi1g1v0328800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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