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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0330600 |
| Transcript ID | LotjaGi1g1v0330600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910; TrEMBL-Plants: tr|I1KBU3|I1KBU3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0330600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78648855..78650793) extracted from Lotus japonicus Gifu genome v1.2.
CAATCATTCGGATCCCAACATGAATAGGGTATACAACCTACATGCTACACTGATCAAAACCGGCCAACACAACAACCCCC TCTCTCTCCGAACCTTCTTCCTCCGCTGCGCAGAGTTACCGTCCGCCGACACCGCAAGCTATGCCGCCGCCGTGTTGCTC CGCTTCCCCATACCCGACCCGACCCCCTACAACACCGTCATCCGACACCTGGCACTCCACTCTCCCACCCTTGCCACCAC CCTCTTCTCCCACATGCACCGAACCGGCGTCCCCGTCGACCACTTCACCTTCCCCCTCATCCTCCGACACTCCCTCCCTC GCCTGAAACCCCACCACCTCCACCCCCTCATTCTCAAGCTTGGCTTCGCTTCCAACATCTTCGTCCAGAACGCACTCATC AATGCATACGGTTCTTCTGGCTCCCTCAACCTGGCAGTGCACCTGTTCGATGAAATGCCCCAGAGGGACCTGGCTTCTTG GTCCACCTTGATTGTTTGTTTCACCAACAACGGTTACCCTGCTGAAGCCCTTTCACTTTTCCAACAAATGCAGCTGGGTG ACCCTCAGGTTCCGGAATCCACTGATGGGGTTATGATGCTGAGCGTGATATCCGCAGTTTCGAGCTTAGGTGCTTTGGAA TTGGGCATCTGGGTTCATGCTTATATTCGTAGGGCTGGGCTTGGCCTTACTGTTCCGCTCGGTACTGCTCTTATTAACAT GTACTCGAGATGTGGGTCGATTGATCGTTCGGTCAAGGTGTTCGAGGAAATGCCGCATAGGAACGTGGTTACGTGGACCT CGTTGATTACTGGCCTTGCGGTTCATGGTCGTAGCAGGGAAGCTCTGAGAGCGTTTCGTGACATGAGGGAGGCTGGTTTG AGGCCTGACGGTGCTGCGTACACCGCTGCGTTGGTGGCTTGTAGTCATGGCGGTCTTGTGGAGGATGGGTGGCGGGTTTT CGAGAGCATGCGGAGTGAGTATGGCGTTTATCCCATGCTTGAGCATTATGGTTGCATGGTTGACCTTCTTGGCCGTGCTG GGATGCTCCTTGAAGCTTTTAAATTCGTGGAGGATATGCCTATCAAGCCAAACTCTGTCATTTGGAGGACCTTGCTTGGG GCGTGTGTGAACCACAATGATCTTGTGTTAGCTGAGAAGGCCAAGGAGAGGGTCAATGAGCTGGACCCTCATCATGATGG TGATTATGTGCTTTTATCCAATGCATATGGTGGAGTTGGTAACTGGGGTGGGAAGGCTGGCGTGAGAAATTCTATGAGGG AGAATAGAATTGTGAAGGAGCCTGGCCTTAGTGTGGTTCACATTGATCAAGTGGTTCATGAGTTTGTATCTGGAGATAAT TCTCATCCACAATGGGAGGAGATTATGAAGTTTTTAGTTTCAGTCGTAGATACCATAAAACTTGGAGGTTATGCCCCTAA CACGTCCTCTGTGCTACATGATATTCAGGAGGAAGAGAAAGAGCATAGTCTGGGCTATCATAGTGAGAAATTGGCTGTGG CTTTTGTGCTTCTTTATCACAGGGATAGGAAGGCCATTAGGGTCATCAAGAATCTTAGGATTTGTTATGACTGTCATAGT TTCATGAAGCATGTTTCAGGTATCTTTGACAAAGATATAATTATTAGGGATCGAAATCGGTTCCATCATTTTAGCAAGGG ATCATGTTCTTGCGGAGATTTTTGGTAAATCAAGATAGTTCAGGTATAAAATGATATTTTAACAATCATTTGTCTGAATC ATTAAGTGCCGTTTGGACTTTGGCGTTTGAGTTGGGCATAGAGTTAAAGTTTGGGATTAGCATTGGACATCTTAATTCTT TCTCATAGGCTCTTTTAGAAGGGAGTTCAATTTCTAACCTCCATCACTCCATCTCTAACCCCCTTTTAATGTACTAAAAA TATTGTAATGCCCGGAATT
CDS sequence (LotjaGi1g1v0330600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAGGGTATACAACCTACATGCTACACTGATCAAAACCGGCCAACACAACAACCCCCTCTCTCTCCGAACCTTCTT CCTCCGCTGCGCAGAGTTACCGTCCGCCGACACCGCAAGCTATGCCGCCGCCGTGTTGCTCCGCTTCCCCATACCCGACC CGACCCCCTACAACACCGTCATCCGACACCTGGCACTCCACTCTCCCACCCTTGCCACCACCCTCTTCTCCCACATGCAC CGAACCGGCGTCCCCGTCGACCACTTCACCTTCCCCCTCATCCTCCGACACTCCCTCCCTCGCCTGAAACCCCACCACCT CCACCCCCTCATTCTCAAGCTTGGCTTCGCTTCCAACATCTTCGTCCAGAACGCACTCATCAATGCATACGGTTCTTCTG GCTCCCTCAACCTGGCAGTGCACCTGTTCGATGAAATGCCCCAGAGGGACCTGGCTTCTTGGTCCACCTTGATTGTTTGT TTCACCAACAACGGTTACCCTGCTGAAGCCCTTTCACTTTTCCAACAAATGCAGCTGGGTGACCCTCAGGTTCCGGAATC CACTGATGGGGTTATGATGCTGAGCGTGATATCCGCAGTTTCGAGCTTAGGTGCTTTGGAATTGGGCATCTGGGTTCATG CTTATATTCGTAGGGCTGGGCTTGGCCTTACTGTTCCGCTCGGTACTGCTCTTATTAACATGTACTCGAGATGTGGGTCG ATTGATCGTTCGGTCAAGGTGTTCGAGGAAATGCCGCATAGGAACGTGGTTACGTGGACCTCGTTGATTACTGGCCTTGC GGTTCATGGTCGTAGCAGGGAAGCTCTGAGAGCGTTTCGTGACATGAGGGAGGCTGGTTTGAGGCCTGACGGTGCTGCGT ACACCGCTGCGTTGGTGGCTTGTAGTCATGGCGGTCTTGTGGAGGATGGGTGGCGGGTTTTCGAGAGCATGCGGAGTGAG TATGGCGTTTATCCCATGCTTGAGCATTATGGTTGCATGGTTGACCTTCTTGGCCGTGCTGGGATGCTCCTTGAAGCTTT TAAATTCGTGGAGGATATGCCTATCAAGCCAAACTCTGTCATTTGGAGGACCTTGCTTGGGGCGTGTGTGAACCACAATG ATCTTGTGTTAGCTGAGAAGGCCAAGGAGAGGGTCAATGAGCTGGACCCTCATCATGATGGTGATTATGTGCTTTTATCC AATGCATATGGTGGAGTTGGTAACTGGGGTGGGAAGGCTGGCGTGAGAAATTCTATGAGGGAGAATAGAATTGTGAAGGA GCCTGGCCTTAGTGTGGTTCACATTGATCAAGTGGTTCATGAGTTTGTATCTGGAGATAATTCTCATCCACAATGGGAGG AGATTATGAAGTTTTTAGTTTCAGTCGTAGATACCATAAAACTTGGAGGTTATGCCCCTAACACGTCCTCTGTGCTACAT GATATTCAGGAGGAAGAGAAAGAGCATAGTCTGGGCTATCATAGTGAGAAATTGGCTGTGGCTTTTGTGCTTCTTTATCA CAGGGATAGGAAGGCCATTAGGGTCATCAAGAATCTTAGGATTTGTTATGACTGTCATAGTTTCATGAAGCATGTTTCAG GTATCTTTGACAAAGATATAATTATTAGGGATCGAAATCGGTTCCATCATTTTAGCAAGGGATCATGTTCTTGCGGAGAT TTTTGGTAA
Protein sequence (LotjaGi1g1v0330600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRVYNLHATLIKTGQHNNPLSLRTFFLRCAELPSADTASYAAAVLLRFPIPDPTPYNTVIRHLALHSPTLATTLFSHMH RTGVPVDHFTFPLILRHSLPRLKPHHLHPLILKLGFASNIFVQNALINAYGSSGSLNLAVHLFDEMPQRDLASWSTLIVC FTNNGYPAEALSLFQQMQLGDPQVPESTDGVMMLSVISAVSSLGALELGIWVHAYIRRAGLGLTVPLGTALINMYSRCGS IDRSVKVFEEMPHRNVVTWTSLITGLAVHGRSREALRAFRDMREAGLRPDGAAYTAALVACSHGGLVEDGWRVFESMRSE YGVYPMLEHYGCMVDLLGRAGMLLEAFKFVEDMPIKPNSVIWRTLLGACVNHNDLVLAEKAKERVNELDPHHDGDYVLLS NAYGGVGNWGGKAGVRNSMRENRIVKEPGLSVVHIDQVVHEFVSGDNSHPQWEEIMKFLVSVVDTIKLGGYAPNTSSVLH DIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKAIRVIKNLRICYDCHSFMKHVSGIFDKDIIIRDRNRFHHFSKGSCSCGD FW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 46 | 186 | 141 | 7.5E-17 | ||
| ProSiteProfiles | 53 | 86 | 34 | 5.349 | ||
| PANTHER | 56 | 210 | 155 | 2.6E-72 | – | |
| ProSiteProfiles | 119 | 153 | 35 | 9.679 | ||
| TIGRFAM | 122 | 150 | 29 | 1.4E-4 | ||
| Pfam | 124 | 150 | 27 | 3.9E-4 | ||
| TIGRFAM | 153 | 178 | 26 | 4.7E-4 | ||
| Pfam | 153 | 178 | 26 | 2.2E-4 | ||
| ProSiteProfiles | 154 | 184 | 31 | 5.546 | ||
| Gene3D | 187 | 320 | 134 | 6.3E-32 | ||
| ProSiteProfiles | 189 | 223 | 35 | 5.733 | ||
| PANTHER | 205 | 419 | 215 | 2.6E-72 | – | |
| ProSiteProfiles | 224 | 254 | 31 | 7.728 | ||
| TIGRFAM | 229 | 256 | 28 | 0.0021 | ||
| Pfam | 254 | 301 | 48 | 6.6E-10 | ||
| ProSiteProfiles | 255 | 289 | 35 | 12.748 | ||
| TIGRFAM | 257 | 290 | 34 | 5.4E-8 | ||
| ProSiteProfiles | 290 | 320 | 31 | 8.111 | ||
| TIGRFAM | 293 | 325 | 33 | 9.6E-4 | ||
| Gene3D | 321 | 494 | 174 | 1.4E-10 | ||
| ProSiteProfiles | 326 | 356 | 31 | 6.445 | ||
| Pfam | 329 | 353 | 25 | 0.022 | ||
| ProSiteProfiles | 358 | 388 | 31 | 5.448 | ||
| Pfam | 428 | 551 | 124 | 5.4E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0330600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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