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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0332000 |
| Transcript ID | LotjaGi1g1v0332000.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chromophore lyase CpcT/CpeT; TAIR: AT5G51020.1 crumpled leaf; Swiss-Prot: sp|Q9FI46|CRL_ARATH Chromophore lyase CRL, chloroplastic; TrEMBL-Plants: tr|I3SDK0|I3SDK0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0332000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:78847107..78850427) extracted from Lotus japonicus Gifu genome v1.2.
AAGATGAGTAGCGACGACGGGTCGGATTCCAATGGATGGAACCGTGCTCGAGGGTTGGCGGTGAAGACTCTGCTACTCAT CGGCGGTGCTCTTCTCGTCAAACGCCTCCGCAAGTCCACCACCCGCTGGGACCATGCTCGTTTCGTCTCTAACTCCCTCA CCGGCGAAAAGGTTCACTCACAATTCTTCTCACTTTCTTTTATTTTAATTAATTTTTTGAAATTAATGTTCTTGGTGTAG TATTCAAAGGAGCAAGCTTCCAGAGACCCAGAAAACTATTTCAACATTAGGTACTTTGTTTTTGTCATGGCTATCTGCAT CATACTTGAACACACTCAAATTGGGGTTTTAATTGGTGTATAAAAGATAGTATTTTTTAGACATGCAACATCACACTTAG ATTGTGTCTTTGCAGAATGCTTACATGCCCAGCAGCAGAGTTAGTAGATGGTTCTAAGGTCCTGTATTTTGAGCAGGTCA GAATTTGTGTCCTATCAATCAGTTTGGATACAAATTAAAGAGCACTTATTGGAGCTTATCTAGTAGATTAGCTCAATCAG TTTGAAGTCTTCTATCTATTATGTATGATCTTAATTGTTAGCTCAATGATGATTTTCTTTATGCTTGTAGGCTTTTTGGA GGAGTCCACAAAAACCCTTTCGGCAGGTAGACTAACATGTCTTGTGAGAGTACTTGTTTCCATTTTTTTTTGTTTTTCCT TCTAATTCTTATTTGCATTTGTCATCTTTCGTCTTTTTTGCAGAGGTTTTATATGGTGAAACCTTGTCCAAAAGAGTTGA AATGTGATGTTGAGGTATGTCTTTAGTCACTTTGAAGACGCAAATGACCTGTTCTTCTAGCATTGATTTGTATGAAATGT GGTTTAATGATTGTCATCAGTTTTCTCTTGGAGGCATTTGCATTTGCGACACTGCCCTTTCCTAGTTTACCATGATTTGT GTTCATCAATGATATTGATGCCTCTTCTTCCTGATATCTTTAGCTTCATGAAACAGTATTGAGATCTTCTTTAAAAGGAA ATTACCGTTGCTTTTCTATTGTATGGCATTTTAAAAATGTATACTATGCCTTCGGTATTAATGGGATTTTGTTCTGAAAC CGTTTTTAAAACTCCCATCTTAATTTTGTACTGGTTTTATGTATCCGTAGTGATACAGGACATATGGGATCAATTATAAT TAGATGCCAGGTTGCTATTTGGGATTTGGTAGATGAGTACTCAGACTACAGTTTTGTGGATTCTTCTATGATATTCCAAA CAGTACCCAGCATGTACGTATAATTATTCCAACCATTGTCCTATATTACATGGATACTTGTTCTTATATGTTTACAGCCC GTTTGAATGCGGATTTATTAGAGCTTATTGGAGCTTATCTACAAGAAAAAGGACTAAGTAAGTTCCAATAAGTGCTATTT GGTTTGCATCCAAACGGTTACTCTGATTTCTAGAAGCATGATTTCAATAAGTATATTATATTTTCCCCCTTGCTGCAAGT GGATATTATTTTGTTTAAACTTGGAACATAAATACTAATACTAACTTCTGCTTAATAGCAGTTAAGTACATATGCCATTA GAGACATGGAGGAATACAAGAATTTCTGTGATCGACCAAAGGATCAGCGTCCACAACCAGAAGAAGTCATTGGGGTAAGC ATTCAATTATGTTCCGTAGTTCATACTGTGATCTTAGCTTAAGGAATCTTCTCTTTAGACATTTGCCATTTTTTTAGGGA GAAGTGGGTTAGTAAAAAGATTGATGTGGGAAGAAGGTCTTCAGATGCTAAAAAATCTGTGGAGGAAAAGTGACGAAAAT AGAGAAAAACGGGAGAGAAAGAAATGTATGGTGAAGAACAGAATGAAAAACAAGGCTGAAAAGAGACTGACAAAAAAGAA GTAAAATCTTTGGATATTTTCAAAATTAGTTTATAGTAGGCTAGTAGCTGTAGATAGATCAGTTGATACACCAGAGCTGC ATAGAAAACCACAGCAGCACTGCTTAAGGGGATAAAACATGTCTCAGATTGAATACTGCAAAATGTATTAATGATTGAGG ATTATATTACAAAGAGCCATAGATGCCGAGAATCTAATTGACCTGTGGTTTATAGGTTGATATATGCAGTGAGTGAGTTA AATACATCTTAGTATTAGCTGTCACTCTTAGATGATGATTGATTAAATGAAGAAACATTCCGGTTTGGTGAGGAGGTAAA GCTGTCATTCCCCCTTTATTTTGTTTATAGGGTGATACTATGATAATTCTTTGACTCACTAAGGTAGGATGTAGAGGCAC TGCTATCTTCTTAAATCCATTACCTACCCAAAATGTGGGGTTATCAATGAATTTCTTTCATGAAATACTAACATTTTAAT TAGCAGAAATAGTGAAATACCCTCCACTGATTGAAGTGTCACTTCTTGTATCTAATCATATTTCTGTCTCACATTTATTT CATGCTTTGCCTGCGTGTATGTTGTTGTGGCTTTTCTTTGAGTGTGATTATTTTTGTTTACATCTTGAAAGAGGTAACTA CATCAATGAAATAATCATTTCGGAAATTCTGGACCAATTTTTTTTATGATTGGCAGCTTCTTAGGTAATTGCTTTAGCAT GTTTTTAATTGGACCTGTGATAAGTTCTGTTTGTGTATTTGAATACCTTGAGATCTTCAATGATCAAACAAAGTGCAATA TATCTATTTATTCTAGTATCTGATTTCCCTGAATACATATACTGTGATCTGCAGGATATTGCAGAACATTTGACAACAAT ACATCTCAAGCGTTGCCCACGTGGAAAACGCTGCTTATATGAAGGTTCAACCCCACCTGGCGGATTTCCTAATTCATGGG TAATTTTCAGTTCTAGCTACTCTTAATATCCTTCTCCCTTTCCTTCATACTATTACCACTTTCATAGTATCTTCACTCTT TCCTATAGCAGAATGGAGCAACCTACTGTACATCAGAACTTGCAGTTCTGAAGAACAATGAGATACATACCTGGGATAGA GGTTTTGATGATGACGGAAATCAAGTTAGTTTTCTTGGTCTCTATGTTATTGGCTTGACTAATGAATTGCTTTACCTGTT ACTGTAAATTTAGACAACAGACTAAAACAGAAACATGAATTATTTCGTATTTGATTGCAGGTTTGGGGACAAAAAGATGG CCCTTACGAGTTCAAGCCTGCACCAACCTCCTGTTTTAATGATATGTTATCCCCCTTGAATTTCCCCCCTCCACCATCAA TGGATAGAAGAATAGAGGGTTCATTCATTTTGCAAGATTGA
CDS sequence (LotjaGi1g1v0332000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTAGCGACGACGGGTCGGATTCCAATGGATGGAACCGTGCTCGAGGGTTGGCGGTGAAGACTCTGCTACTCATCGG CGGTGCTCTTCTCGTCAAACGCCTCCGCAAGTCCACCACCCGCTGGGACCATGCTCGTTTCGTCTCTAACTCCCTCACCG GCGAAAAGTATTCAAAGGAGCAAGCTTCCAGAGACCCAGAAAACTATTTCAACATTAGAATGCTTACATGCCCAGCAGCA GAGTTAGTAGATGGTTCTAAGGTCCTGTATTTTGAGCAGGCTTTTTGGAGGAGTCCACAAAAACCCTTTCGGCAGAGGTT TTATATGGTGAAACCTTGTCCAAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATTAGAGACATGGAGGAAT ACAAGAATTTCTGTGATCGACCAAAGGATCAGCGTCCACAACCAGAAGAAGTCATTGGGGATATTGCAGAACATTTGACA ACAATACATCTCAAGCGTTGCCCACGTGGAAAACGCTGCTTATATGAAGGTTCAACCCCACCTGGCGGATTTCCTAATTC ATGGCAGAATGGAGCAACCTACTGTACATCAGAACTTGCAGTTCTGAAGAACAATGAGATACATACCTGGGATAGAGGTT TTGATGATGACGGAAATCAAGTTTGGGGACAAAAAGATGGCCCTTACGAGTTCAAGCCTGCACCAACCTCCTGTTTTAAT GATATGTTATCCCCCTTGAATTTCCCCCCTCCACCATCAATGGATAGAAGAATAGAGGGTTCATTCATTTTGCAAGATTG A
Protein sequence (LotjaGi1g1v0332000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSDDGSDSNGWNRARGLAVKTLLLIGGALLVKRLRKSTTRWDHARFVSNSLTGEKYSKEQASRDPENYFNIRMLTCPAA ELVDGSKVLYFEQAFWRSPQKPFRQRFYMVKPCPKELKCDVELSTYAIRDMEEYKNFCDRPKDQRPQPEEVIGDIAEHLT TIHLKRCPRGKRCLYEGSTPPGGFPNSWQNGATYCTSELAVLKNNEIHTWDRGFDDDGNQVWGQKDGPYEFKPAPTSCFN DMLSPLNFPPPPSMDRRIEGSFILQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 14 | 14 | - | – | |
| PANTHER | 3 | 266 | 264 | 1.1E-158 | – | |
| PANTHER | 3 | 266 | 264 | 1.1E-158 | ||
| Phobius | 15 | 32 | 18 | - | – | |
| TMHMM | 15 | 32 | 18 | - | – | |
| Phobius | 33 | 266 | 234 | - | – | |
| Gene3D | 43 | 240 | 198 | 4.3E-25 | ||
| Pfam | 49 | 232 | 184 | 2.6E-48 | ||
| CDD | 52 | 234 | 183 | 1.76191E-56 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Lyase activity | Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. | ||
| Biological process | Protein-phycocyanobilin linkage | The linkage of the chromophore phycocyanobilin to phycocyanin or allophycocyanin. |
Expression pattern of LotjaGi1g1v0332000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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