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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0333200 |
| Transcript ID | LotjaGi1g1v0333200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Centromere protein S; TAIR: AT5G50930.1 Histone superfamily protein; Swiss-Prot: sp|Q8N2Z9|CENPS_HUMAN Centromere protein S; TrEMBL-Plants: tr|G7J3A4|G7J3A4_MEDTR Transcription initiation factor IID, 31 kDa subunit; Found in the gene: LotjaGi1g1v0333200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79113394..79121781) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTAGATTTATGGAGAGAGAAAAGGCATGTTGGGCTTTGAGTTTGTACTTGTTAAATTCAGATCAATACTTAACGG TTTATACTTGTTACCCAAAATGTGAACTCTTCTCTGACTCCCTCCTCTGCCTCTAGGGTTCGTTCTTGTTACCCAAAACA GAACTCTCCTCTGACTCTCGCCTCTTTTCTCTGCCGGTGTCCACCCCACTTCCATCCAACCCTTCTGTCGATTGTGTTGG AATCACCCTCGATAATCGAGTCCCTCAGCCACGATTGTGTTGGGATCAGATCGTCGGACACACCTTCACGCACGCACTCA GATTTAGGCGTAGATGGCCCCTGGTGAGGCTGCTGATGACCCGGATTTAGTAGTGTTTTTAGGGTCATTTCTTTGTAGGT TTTGAGTCTTTTCCTTGTGTCTCATGTAGTGTTTCATGCATTCTCATGCATTTTTGCCTTTCTTTGTGTTTTTACTTTGT TTTGGTAATTTCATAGTCTTATAGGGATTTTTCTTACATTTTAAGTAAGTTTAGGACTTGCATAATTTTCCTATTTTATT TGAGGGGTCTTTTGTGCTAATAATCTCTTGGAGTTCCTAGATATTTTTCCTTGCTTTGTTCCTAAGTAATCAGGTCTGAA ACTGCTGAAGAAAGAAGGTCAAAAGGCTTGGAAAATGGAAGGGAGGCTTAAAGGGGAGTTAAGAAGAATGTCAAGAGGCT TTCTAGCATGTCGAGAGCGCTCAGGCGCTCGTGTTGAGCGCCTGAGCGCCAATTGGATCGTTGTGTACATCATGCTAGAG AGTAATTGGCGCCTGAGCGCTCCTGTTGAGCGCCTAGGAGCCAATTACCTTCCAGAGGCTCAGTTTCAGTAGGGAATTGG CGCTCAGGCGCTCTATATTGGCACTTGAGCGCTAGGAACAGCCCAGACTCGTGATTTTTGCCTATAAATAGGATTCTAGT CATTTTCTCTTGTATCTTTTGATACTTTGTCAAATTCAGAGGTAGAGGATCATCTAGGAGAGTGAGAGAGGGCTTCCAAG CTTGTAATTCAGGTTCTTAGCCAAGCATGGCTTGGCTAATCTCTCTTCTTATGCTTTGGTTTTCATGTAAGACTTTTCAT ATTTGGGTTATAATCTTAAGTTCTTTCCCACATGTTCTTCTTCTTTCCTTGAATCTCATATTCTGAATTTCAATCTAAGC TTGTATGCATGCTTGCTTTTTGCTTTTCTATCATCAGAACGTAAGTTTGTTATAGATTAGGGAACCGATTTGGGATTACC CCTTCTTTGCTTGCTACTAGGAATAGAGGAAGGGTTGGGGTTTGTTGGCCTGAATTTGCATGATCTAAAACCTCATATAA ATGACTAAATACACAAGGAATTGGGCTTAGCTTTTAGTATGGGAGAATTGCTTATGTGGGGAATCAATAAGTGAGTAACT AGGCAATCCATGAGAACATGTGCTTAGAATGATGTGCCTGAATTGACTAGTTGAACAAGAACCCAAAGCATGTTCTTTTC TGATTTTTTGTTTATTTTATCTTTACTACATCGACATATCTCTATTTCAATAAAACAAACCTTCATACTCAAGACTTAAA CTGAATTTAGTCACTCACAATCCCTGTGGTTCGATATTTAAAACCAGGTGGATTCGTACACTTGCGGATTTACCAACAGC TGCGGCCGGAAAGGCTGCTGTACGCGCGGAGTGTGGCGGCGAAAAAAGGCTGTCACACGCGCCTTCACGCGCGGTGGCGC GTCAGATGCCGATGGTGGCATGTAAGGAAAATGGCTGAGCCATCGAGTGAGCCCAACCCATGAATAAGCCTTTTTTTTCC TGCTTTCTTTTTCTTGCCCATTTTTATTTTCTTCCGCTTGCACCCTCTCGGGTTTTTTTTTCGGACCTACGTTTTGGGCT GAAAACATTAAGACTGACTCCTTCATCATCTTCTCCTCGAGTCTCTTTAGTAACCTAGTTCATCATCTTTCTCTGTAGTG ACCTAGTTCATCATCTTTCTCTGTAGTGACCTAGTTCTGTGATGGCAGCTATGATCCTTCATTGCCACAAATTCCTTGTC TCCCCACCGCGGTTCAAGCTGCTGGCCAATACCCTGCTTTGCTCACAGCACCATCATTTTGCTACTCCTACTGAAGCCCC ATCTGATGGCTCCACGAAAAAACCATCTGATGGTAACATTGCTCTTACTCATTTATTTTGTTTCTCTTACCATTTTCTAA ATTTGATTTTTTCATTTTTGTCATGTGACAGATTTTTCCTGACTGAATCGTTTATTTTTTTTTGTAACGCTGCTGTTGGG CACGACAATTATATAGCACCACTAGGCATGACAACAACAAACAATCAATTAGGGTCAATGAAAATAAATAAAGAAAACAG GAAATTAGCTATAAAGATATGAAAAAACACAGATCCTGTTTTTGGACAACAAATTGAGTCGTGTAGTTTAGGATCTCCCT TCTTTACCACTTGAAAATTTGGGTCACTTTGATGAGTTGTGACATATATCTCACCTTGCTTTCCTTTTTTCCCCTTTACA GATTATTATAGTTCACCCGGATAAAAATCTTGGAGGTAAGTATTATAAGGATTAGGAGTATTTGGCTTTAGGGCTTCTTT TTTCCTTTAATTTGCTTCATTTTTTTGTCCAACATTGTTATTATAAATATGGTATTTATGCAGAAACTTGCGGAGGCTTA CCAGATTTTGAGTAATCCGTAAGGAATAAAGGAAAGAGAAAGGAAGAGTTGGGACAATGAGTTAATACAACCTTATATAA CTTAGTAGTGATTAACTAATAATAACTTGCGAGTAAGCTCAATGCAATGGTCAAGTTTTGTTCTTACTCATTGTCATTGA TGAATTTTCCTTTTTCTGTTAGTATGAAAGTGGTTTGGTCAGACCAATCAATTGTTAGTATAACTAGTTAAACTTTTTCG AAGAGTTTTTTGAGCTTTTTGCTTAGTAAATAACTGCAATTTTACCTCATAATGTCATATTTGCGAACTTTTTTTTTTCA CTTTTTAAGCCTTTGAAATTATAGTGGAGACAATATATAAACAGATTCTGTTGAATTTCACTTGCAGAAATTTCAAGAAT ATTTGAAGGTGCGCTTAATTTTTTAGAGGTCTAATCCAGTTTTCCCTCTCTATACCCCTTCCTCTCTCCTTAATTTTTCT ATCTGAAGTTTTTGCCATATTTTCAATCTGTAGCATTGCAGAATGATATGGAAGACAAGCTTATAAAGTTTTTTAAAAGT CACTTGAATCCTTTTGTTGATGGTCAAACACAAAAATATGCACTGTGGGGAAAGGCATAGGTTGTCCAACTTTCAAAAGT AGGTAAGTTTCCTCATATACTCTAATTCTATGACTAGTAGTGAACCATTTACTAAAAAAATATTTATTCTAGAGGTTCCA ACATCTCAACTTAATCATTAATTCATAAAATCACTAATGTATAGTTATTAGATCCTTTTCAAGGTCGCAATTTAATCTAA TTTCTTTTTTCTGATATGATCATGAATTTATATCCAAATTTGGGGTGGTCTAGTAAATATTTTATGAGTATGCCAAGAAA CTAGAGAAGAGATGATTAGGTTTAACTTGTTGATAGTAATCAGTTATTACCAATATAAGCAATTTAGGCGCACATATCAA CCCTCCTTCAGCAACTCCATAGAAAGTGTAGATCAAATGAACATGGCTCATGTAAGAATATAACATTGCATTTATGAAAT TCATATTGAAGTTTGAACAATATATGCTTCTTTTCAGCTTTTGGAGGGGTGATGTTACATACAATTGAATATATCTACAC CCGAGAAGTTGCTAGAGAATTTCAAAAGGATACGCAGTATATGAAGGTGGAGTTTTGGCAGATTGGGTACAAGACATAGA TCCCTCACAAGTGATGGCAGCCTCAGGTAGTAGACTATTGTTAGTGATATTATCAAGCTTGGATGTCATTAACTTTTCAC AATTTTGGAAGTTTTTAATTGGCCTCAACTGTTTATGTAGGTGTTGTGTCCTACATTCACATACTAGAAGAAGACAAAGA ACTAAATCAAGGAGTAAACAAAATAAGCATTGTAAAAACTTGCATGGATAAGAAGGATCGCGTGATAAATACGCTTTGAA AGATCAATGTGATGGATTTCGAATCAACAATCTCACATGTCTGTGAAGCTGTAAGTTCAAGTACTTGTTTTGGTAGATGC TTTAAGAAATAACGCATGCAGTAATAACAGTGATGAGTTAGAAATTTCAATTAATATAAGGCTTTAATAAAATGGTATGA CGCTTGTTTTTTTTTCCAAGTTCGTAAGAATCGTGACGCCCCCAACAGTGTTCTAGCATCACGAGGTAAAGCGTTGGAGA TGTTGGGAGCTATTTTTCAAATAAGTGTTTCAGAATGTGATGAATTTCCAAAATTTAGCAATAATAATGATGTATACAAA ATTTGGTTATTCATACTTTGAAATAATACCTTTTTAAATATACAATGCATTAGTTTGTTCCTCACTTAAAAAATATTAAC GTTGTTTCATTACATGTATGGGGACGAAAATTAAAATATTGATTAAAATAAGAATCAGATTTTGTGTATTCTCGTTTGTA TATTTTTTATAAGATTATGAAAAAATCGCTGTCACAAAAAATAATAATAGTTATAATTACATTTGTCATTAATTAATTAT TATTTTTTTAATATTTTCAAAAAAGTAATTACCATAGCTAATGCAACGTTCCCTTATGTGAAATATTAGTTTCCTCATTA GATGGCTACGATACCAAAGATTGCACAAATATGAGAATATAGAGAGAAGAAAAAAAAAAGATAAAGTTGATTGTGGGAGA AGAGTTGTGACAGAGACTAATAGAGACTTGCACACTGTGTTCAACTGATAGAGACTTGTGCGCTAGTTTTTGGCTGAAAG CCCAATGTACTATCAGCTTCCCAGTTTTTTTTTTCTGCTTCTTAATTTTGGTTAGTATTTAGGGATAATCCTCTAATTGG TCCCTGTGGTTGTGTGGCCGTCTGAAATTAGTCCCTCCCGTAAAATCTAAGTCCTCGCGTTTGAAAAGTGTGTGGAAATT AGTCCCTCCGGCGAGGACCTGCTACACACACTTTTTTAAACGCGAGGACTTAGATTTTACGGGAGGGACTAATTTCAGAC GGCCACACAACCACAGGGACCAATTAGAGGATTAACCCTAGTATTTATAATGACCATACTAACCAAAACTTATATATTCC TGAAATACAATTTCCATGCGATCACGAAAGATAACTCTATGCTAGAACTTCGAACGTAGAAGATTAATTTACCAACCTAA CTTTTAATACGTGCACAATTCTACTTTTTCTCATACTAAAAATATCCTTTTGTCACTCATATAGTTTTTATTTTATTTTT CTTTTATTTTAGTTTAACAATGTAGGTATATGTGAGGTATATTGTGGGGTTCATTTAAGAAACTTTTAGAGTTACTGGGT TGGAGTAAAAAATGAGTAGGATTGATTAAAGTGGTTTAAATGACGTGACATTACCAAAATTTAAATTAGAAACTCTAATG AGTTTCTTGGATAATGATGGTCTAAACACTGTTCCTATATTTTAAAAATTAAACAAATCTTGTCCTCCTGCTAGCTTTTT TCTCTCAAACTCTTTTTTTTTTTGAAAGTTTCTCTCAAACTCTTAGTTCTACATAAGGAATTTATCTTAGAATGTTAATA TGAAACAACTTTAAATATCTTCAAATCAAAATTTGAATGAAATTTTGGTCAAATTTGAATTACTTGTAGGGTTCAAGGTG AGGGTTTGAAAAAAGAAAAACTGAGATTATTTTTGTTTTTTTTTTGTAATTGTATCTTGTGGGCCGAATTTTGTTGGGCT TGAAAAGATTAGGCCCATTGTGGCAGTTATAGTCTCAGCAAAACCCATTCATATTCCCTCGTCCACCATCACTCTGAAAT TTGATTTCCCTCCACCGGAAACCGCCATGGAAGCAAGCAGCAGCGAAATGGAAATCGACGCGGAAACGAAGCTGTTACGA GACAGGTTCCGCCTCTCCGCAATCTCCATCGCTGAATCTCAAGGTTCCCTTCAATTCTCCTCACTCCCCTTCACTTTTTT TCACTCATTCCAGTTCCTGATTCATTCTTCTGTTCTGCAGCAAACAAATCCGGCATGGAAGCATCGAAAGTCGTCGTCGC TTGCGTTTCCGATTTAGCCTTCAAATACACCGGTAATTCACATCGCTATCAACAATAATCAGCATCAAATGAAATTGTAG TGTATTAATTTCAGCATGATCACAATGTGAATGATAAAATGTCACTTAGAACTTGCTCGCTGCAATTCTTCAATAGATTG TGAATATGCGGCGATCAATTAAGTATAATGTTGAACATTTTGATTTTGAGTGAACTATGAAGTAATGCAATCCTTCAATA GATTGTGAATGTACAGCAGTGGATTATGCATAATGTTGAACATTTTGAGTGAGTGATGAAAGAAATTGTGTGTTTTGTGT GAACAGAGCGATTGGCTAAGGATCTTCAGCTTTTTGCGCAGCACGCGAATCGTAAATGTGTGAATATGGAAGATGTTATA CTTTGTGGTCAGTTTCTTAATCTCTTCTTGATTGTTTGCTTGCTTTTCAGGGAGAATGAACTTGTTATTTAGTATCTATT AGAAAAATTAAGAGGATGAATTGAAACTGAATGGAAGATAGAATTTTCATTAATTCAATCAACTAACAAGTAGTAGCTAT TTATAGCTATGCAGTTTTAACTAACTATAACTGTCCACGCTAGCTGCTAACTATAACTGTGCACAATTAACATTGATTAG CTTGACACTGGAAATTTTAACTAACTACAGCTAATGAACATTAGTAGCTTTACAGTATCTGATACGATCCATTCTTGTGT GTTCTTTTGTTTTGTTTCAGCTCATAGGAATGAGCATCTAACTAGCTTGTTGAGGACTTTCTCAGATGAGTTAAAAGCCA AAGATCCTCCTTCTGAGAGGAAGCGAAAGAAAGAACCCAAGAAGAATGACAAAACAACCATTTAGTGCATTTGCCTGCAG GTACACATGAGCTCTTATCTCAGGGTGCTTAGGAAATTCTGGCACCAAGTTCTATATACTAAGGATAAGTAACTGCTTTT TCTCCTTTACATGCTACTCACTTGTTAGCTAGTGCTGGGATGAATCATCTGTATCATTTATGAATACCATAGAACTCAAT ATCAAGAACCTCTACTTAAAGGTATATAGCCTCTGTTGACTGTTCTGCAAGGCAATGTGCGAGGTCAAGATACACTTGTA TAAATTTCAAGTTCAAACATAAAAATTGTTGTAATATCAAAAGCTCAAGTAGTTAAGTTCTGAGAAGATATTTTTTTGTT TTTATTATTATCTATTAAATGTCACTTTATCTTTGCTTTTTTTTTATATTTAAAATTTTTATATAGAAAATAGTGAAAAC AGCAAAACTTTCTTTATAAATTCTGCAGTCTATACAAATATTTGAAAATATAAAAATGAAAATGGAAGTAATAACACGTA CAAAAATATGGATTGTCACTCACGCCTGTGTTAGAATGTCAAGCTAAATGACTGTGCACCTGAGTTGGATAACCACGCTG GATAGAGTCAACTATAGGAAGGATTAGAAGAAATTATTTTTGAGCTGTAACATACGCGAAACATGCTCAATAGTCTCTGC TTCTTTTACTTTTTTGGTTAAGTATAGTCTCTGTTTCGTGAGCACCACATTGATCTACACAAGAACACTACACCATTCTG TGTTATGAGACTGGATCCGTGCACAGGGATCTGTTTTGATGAAGAAATCAAGGGTACGGCTGAAAGTTGAAATCCTTCTG CTCTTGAATTGCAATGCTAACAGATCAGAGTGGAGAAGAGACCTCAGTTGTGTCGCAGGGCATTGATAGGAATGGCTGGA TGACAAATTAGGTTGATCATATTGAGTGTAAACTTGTATTATTGAATCAGTGAGTTATGCAATTACATGATTGAGCAGTG AACTTATATAGAAGTTCATGTAAACTAGATGAGAGTAAAGACTAATCAGAGTCACAACTGATTCTATCATTACATGAGAA CTAACTAACAACCTGACTGGCTTCTCTTATTAACTAACTCCACTAACTTCAACTAATTGACTAATATATGTAATACTTCC CCTCAAGATAGAGAAAAAATATTTTTGATCCACATCTGGGATAAGAGTAATTTGAAAGTAGGCAATGGCAAGGCCTTAGT CAATACGTCTTCAAGCTGTTGATGAGTTCTGACATGTACAAGGCAAATCCAGCTTTCATTGACCTTCT
CDS sequence (LotjaGi1g1v0333200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCAAGCAGCAGCGAAATGGAAATCGACGCGGAAACGAAGCTGTTACGAGACAGGTTCCGCCTCTCCGCAATCTC CATCGCTGAATCTCAAGCAAACAAATCCGGCATGGAAGCATCGAAAGTCGTCGTCGCTTGCGTTTCCGATTTAGCCTTCA AATACACCGAGCGATTGGCTAAGGATCTTCAGCTTTTTGCGCAGCACGCGAATCGTAAATGTGTGAATATGGAAGATGTT ATACTTTGTGCTCATAGGAATGAGCATCTAACTAGCTTGTTGAGGACTTTCTCAGATGAGTTAAAAGCCAAAGATCCTCC TTCTGAGAGGAAGCGAAAGAAAGAACCCAAGAAGAATGACAAAACAACCATTTAG
Protein sequence (LotjaGi1g1v0333200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEASSSEMEIDAETKLLRDRFRLSAISIAESQANKSGMEASKVVVACVSDLAFKYTERLAKDLQLFAQHANRKCVNMEDV ILCAHRNEHLTSLLRTFSDELKAKDPPSERKRKKEPKKNDKTTI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 115 | 115 | 1.1E-27 | ||
| PANTHER | 5 | 121 | 117 | 2.0E-44 | – | |
| PANTHER | 5 | 121 | 117 | 2.0E-44 | – | |
| Pfam | 21 | 90 | 70 | 1.0E-18 | ||
| SUPERFAMILY | 28 | 90 | 63 | 2.65E-9 | ||
| MobiDBLite | 101 | 124 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. | ||
| Cellular component | FANCM-MHF complex | A protein complex contains the proteins FANCM and MHF, or their orthologs, plays an essential role in DNA remodeling, protects replication forks, and is conserved in eukaryotes. |
Expression pattern of LotjaGi1g1v0333200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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