Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0334100 |
| Transcript ID | LotjaGi1g1v0334100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carboxypeptidase; TAIR: AT1G28110.1 serine carboxypeptidase-like 45; Swiss-Prot: sp|Q93Y09|SCP45_ARATH Serine carboxypeptidase-like 45; TrEMBL-Plants: tr|I3T3C0|I3T3C0_LOTJA Carboxypeptidase; Found in the gene: LotjaGi1g1v0334100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79266330..79269386) extracted from Lotus japonicus Gifu genome v1.2.
ACCATGAACTTGCCAACATGGAAGTTCAATACCATGGCATTGGCTGTGTTTTTGCTTCATCTGAGTTTCTCCTTGAAGGT GTTCTGTTTCTCTTCTGATGCAGATAGAATTGTTGAGCTTCCTGGGCAACCCCACATAGGATTCCAACAGTTCTCAGGAT ATGTCACTGTGGATGACATGAAACACAAGTCTCTTTTTTACTATTTTGCTGAATCAGAAACTGATCCAGCTTCAAAACCT CTTGTTCTCTGGCTCAATGGAGGTCTGCAATCTCTCACTTGCTTCAAAATTTGAAATTTGAAAACTTTCACTACTTTGGA TTGAATAAGAATAGCAATATGCATCCCTTGTTTTAACAATTAAATTTTATTCAGGACCTGGTTGTTCTTCTCTTGGAGTT GGTGCATTCTCTGAAAATGGACCCTTTAGACCAAATGGGGAGTTTTTGATTCAAAATGAGCATAGTTGGAATATAGGTAC TCTTTTGCCTTTTATTCTATCTGCCAAAATGCCCTGTATTTGTTCTTCTAGCATGTTCAAATCAGCATATTTTTCCAATT CTGGTATCCAGAAGTTACTTACAGAAGCTTATCTACATAATTGATCCTGACTAAAAATCAATTGTAGAAGAACTTACAAA TATGATATTGTACTCATTGAGTTACTTTTGTGTTGCAGAGGCAAACATGCTGTATTTGGAGACACCAGTTGGAGTGGGGT TCTCATATGCTAGAGGTAGTTCCTCCTATATGACAGTGAATGATGAGGTAACAGGTATATATCCTTCACTAATGCCAATT ACTTTTTTAGACTCTTCTTTTTAATCTTTTGGGAAAAAAATGTTTCTCTTTAGAAAGCTCCTTTTAATCCTACTTCTATG GGAAAAGGCACATTCCGCATGTTTTATACTGCTTAGGCTTTTTTAAAAAGTTGAGACAAAAATAGTGATTAGTGGTAAAA TACTAAAATGTCATTCTAGGAGCTTTTGTATGGCACTTTACATGATTATTCTTCATCTCTTGTTCTCTACGCAAGCTTTA GAATGGTGTACTTTTACATTTTCAGTATGATTGTGTTGTCCTTGAATACTCAAATTGTCATTATTCCCTCAGACATTTGT CATCTGAAGCAGTGCTTTTTGAATTCTTAAGCCAGGGACAATGTTGTATTCCTGGAACGCTGGTTCAACAAGTTCCCACA ATACAGGAATAGAGATTTGTTTCTAACTGGGGAAAGTTATGCAGGTAAATGTGTCACCTTTGTTTTATTGCATATTTTAG GTATACAGTGTAAATCTAAGGTGAACCAAAATCATGGTGGACAAAAGCAACTTCCTTAGCTTTTGTGGCTGCCTACCGTG ATTTTAGCTTCATTGTGGTTTTCCAATCCAAACATGCACTTATCTATCAATATTCCATTTCATAAACAAACTACAACAAT TATTACTATTATTTGTGTTTACATATTTTTCTTTGTATGTGTGTGTATATCAGGTCATTATGTTCCTCAACTTGCAAATC TCATGATTGAAATGAACAAAAAGAACAAGATATTCAATCTGAAAGGCATAGCTGTAAGTAACATTAACTGTTACCTATCT ATCAGTGATGCTTTCTTTCTCACATATTAATGAATGGCCTCTTGTGTTGAAATGCAGTTGGGTAATCCAGTTCTAGAATA TGCCACTGACTTCAATTCAAGGGCTGAGTTCTTCTGGTCTCATGGACTAATATCAGATTCAACATATAACATGTTCACTA GAGTGTGTAATTATTCTCGGTATGTTAGTGAGTACTATAGAGACTCAGTTTCACCTCTTTGCTCAAAGGTTATGGGACAG GTGAGCAAAGAAACCAGTAAATTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCCTCAGTGTTATCACAATC GAAGGTTATTTCTCCTCAAACACATGTGAGTCTTCCCTTGTTGGCTTGCTTTTTCCATCACTTTATCTACTATTTTAGTT CTACTACTCACTGGTTTTCAAGTTTGCCTTGCTCATTAGCATCATTGTCTTGTGTTCTGACAGCAAGCAAATGAGAGGAT AGATGTGTGCGTAGATGACAAGGTTACAAACTACTTAAACCGTAGAGATGTACAAGAGGCACTTCATGCAAAGCTTGTTG GAGTTCGCAAGTGGGATGTTTGCAGCAAGTAAGTCCTTCTCAGTTCTCATTAAGCATAAAACTTAGTGCGTATTTGAATA CCAATTATAAGTAATCTGAACAAACTTTCATCTTAATCCATAAGAAGAGTTGGTGCAAACGGATATCCAAACATATATTT TCTACCAAATTGGTTGTTAGCCTAAGGTTTTGCTTAATTGATCTTTGAAAATAAGAAGATCAATCATCGGAGTCAGCTTT GCTTGTCCACCATGATTTTAACTGATCTTTGTTGTGTTGGTAACAGCGTCTTGGACTATGATATGCTCAACCTGGAAGTG CCTACACTCCCAATTGTTGGATTACTGATAAAATCTGGAGTTCGGGTCTTAATTTACAGGTAAATAAACAAAACCAAAAC CCTTTTTTCTTCTTGTGATTTATGTGGTTACTTGAATTTGAGGGCTCATACATCAGTGTTTTAGTGCTAATTAACATAAC AATGTGTATTGCTCTCTCTGCAGTGGAGATCAAGATTCAGTAATTCCATTGACCGGAAGCCGCACCTTAGTTCAAAAGTT GGCAACAAAATTAGGACTGAATACAACAGTCCCTTACAGAGTATGGTTTGAAGGCCAGCAGGTATGTATACAAATCAAAC ATCTTGCTAGTTTGAATTATTGAGAAAAACATTGTTAAAATCTTGCTACATTTTAACATAATCAAATTGCATATACATCA TAAACTAATCTCAGTTAATGAAACTAGGTTGGTGGGTGGACTCAAGTTTATGGCAGCATCCTTTCATTTGCCACTGTTAG AGGTGCCTCTCATGAAGCCCCATTCTCTCAGCCTGAAAGATCATTTGTGCTGTTCAAGTCATTCTTGGAAGGAAGGCCTT TACCTGAAGTTTTCTGA
CDS sequence (LotjaGi1g1v0334100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGAAATGAACAAAAAGAACAAGATATTCAATCTGAAAGGCATAGCTTTGGGTAATCCAGTTCTAGAATATGCCAC TGACTTCAATTCAAGGGCTGAGTTCTTCTGGTCTCATGGACTAATATCAGATTCAACATATAACATGTTCACTAGAGTGT GTAATTATTCTCGGTATGTTAGTGAGTACTATAGAGACTCAGTTTCACCTCTTTGCTCAAAGGTTATGGGACAGGTGAGC AAAGAAACCAGTAAATTTGTGGACAAATATGATGTCACCCTTGATGTTTGCATTTCCTCAGTGTTATCACAATCGAAGGT TATTTCTCCTCAAACACATCAAGCAAATGAGAGGATAGATGTGTGCGTAGATGACAAGGTTACAAACTACTTAAACCGTA GAGATGTACAAGAGGCACTTCATGCAAAGCTTGTTGGAGTTCGCAAGTGGGATGTTTGCAGCAACGTCTTGGACTATGAT ATGCTCAACCTGGAAGTGCCTACACTCCCAATTGTTGGATTACTGATAAAATCTGGAGTTCGGGTCTTAATTTACAGTGG AGATCAAGATTCAGTAATTCCATTGACCGGAAGCCGCACCTTAGTTCAAAAGTTGGCAACAAAATTAGGACTGAATACAA CAGTCCCTTACAGAGTATGGTTTGAAGGCCAGCAGGTTGGTGGGTGGACTCAAGTTTATGGCAGCATCCTTTCATTTGCC ACTGTTAGAGGTGCCTCTCATGAAGCCCCATTCTCTCAGCCTGAAAGATCATTTGTGCTGTTCAAGTCATTCTTGGAAGG AAGGCCTTTACCTGAAGTTTTCTGA
Protein sequence (LotjaGi1g1v0334100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIEMNKKNKIFNLKGIALGNPVLEYATDFNSRAEFFWSHGLISDSTYNMFTRVCNYSRYVSEYYRDSVSPLCSKVMGQVS KETSKFVDKYDVTLDVCISSVLSQSKVISPQTHQANERIDVCVDDKVTNYLNRRDVQEALHAKLVGVRKWDVCSNVLDYD MLNLEVPTLPIVGLLIKSGVRVLIYSGDQDSVIPLTGSRTLVQKLATKLGLNTTVPYRVWFEGQQVGGWTQVYGSILSFA TVRGASHEAPFSQPERSFVLFKSFLEGRPLPEVF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 272 | 272 | 1.6E-144 | – | |
| PANTHER | 1 | 272 | 272 | 1.6E-144 | ||
| Gene3D | 1 | 271 | 271 | 4.9E-51 | ||
| Pfam | 5 | 267 | 263 | 4.8E-50 | ||
| SUPERFAMILY | 6 | 271 | 266 | 1.48E-52 | ||
| ProSitePatterns | 237 | 254 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi1g1v0334100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…