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LotjaGi1g1v0334600.1

Overview

Field Value
Gene ID LotjaGi1g1v0334600
Transcript ID LotjaGi1g1v0334600.1
Lotus japonicus genome version Gifu v1.2
Description Sterile alpha motif (SAM) domain-containing protein; TAIR: AT3G48800.1 Sterile alpha motif (SAM) domain-containing protein; Swiss-Prot: sp|Q9H694|BICC1_HUMAN Protein bicaudal C homolog 1; TrEMBL-Plants: tr|I1JXP2|I1JXP2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0334600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:79317342..79319179) extracted from Lotus japonicus Gifu genome v1.2.

GTCCCAGGTCATTGATTCATTGGCTTCTTCACTCTCTTCTCAACTAAACAATCAATCCCACTTCGAAATTTTCAGAATCC ACGAACCAAACCAACAAGAACCCGAACCAGTTTTCTTGTTCGGTTCGGAAGGAAATGACGGAGGTTCCGGCACCGGAGGC GCAATTGACCGGCGGAGTAACGGTGGCGCCCAACAAACCCTCCGAACCCACTGCCACTGGATCGAAGCGCCACCGGAGAC CCAGCGTCCGATTAGGCGAGATCGGAGACCAACCCAACGATTCCCACCCTCTCCGCCGCACCACCACCACCACCACCACC AAGTCGTCGTGGCGCCTCCCCTTCTCCAACGCCTCAGGTAAACATTCCAAGACTCGACCTCTCACCAACTTGACCGGTTT CGGCGGAACCCTAGAGGGCGACGACGACGACGTCGTTCGCTGGAAACTGAAGGACTCCAAGAAGAGGGGTTCTTCCTCCT CCGCCGCCGCCAAGAGACCCCGATCGAATTGGGTTGCTTCTTCCCAAATCGAGGGAGAGGATTTCGATGCAGAGAGCCCT GTTCTTCATTCAGCGGAGAATTTGGGTGATGACGACGACGACGATGATGATTATAGAGCGACGCTGCAGCATTATCATGA GGAGAATGCTAGGGATAATAAGAATGGGAATGGTGGAGGAGTGAGGCATGGAGAAGATTGGATTCGGATTTGGCTCAATG GGCTAGGCTTAGGTAGATATGCTCCAGTTTTTGAAATCCATGAGATTGATGATGAGGTTTTGCACTTGCTAACTCTTGAG GATCTTAAAGATATGGGGATTAATGCTGTTGGATCAAGAAGGAAATTGTACTGTGCAATTCAGAAGCTTGGCAAGGGTTT CTCCTAACCCTTTTGTTTCTTTGTTCTTTTTGTTTGTAGCATAGGAAATTGACAATTGTATGTGAAGATCAATGTTGTTA ATTGCTGGTGGCGGGTCATGGCGGAAAGCCGAAATCACGCCTTACATGACAAATATGGTGGAAATCGCTGGCATATGGTA GGATATTGGTTATAGCGGAAAGCCAAAAAATGTAACATTGAGAAACTGCCATGACGGATATTTGATAACATGGTTGCAGA TTAAGATGCTTGTGTCAACTCTTACTTGTAGAGTATCTTCTCAATATAACTTGTAGGTCTTTCCTTGTCCTTATTTCAAA ACATTCCTTCTGCTTGTTTTAAATTGAGTTTCCTTGTGTTTGGATTGCTGGTAACATACAATGCAAAGTACACTAACTCC AGAAGCTGTACTTTATGGATTCTCTTCAGAAGTGATTATGAGGTTCCCACTGCACAATCAAACATGGTGTCAAATTTAGG TGTGTCATTTTTGAATAGGAAAGACTAATCATAGAAGGGGTACAATACATCTTACAAGGAACTGGGAAGTTTTTGCTTAT GTAACAAAAAGGACATGCTGTTTGATTTCTCCATCCTTTCCACATTGGGTAATGAAAGATGAATGTTTTACCTTTATGTG GCTACTACCTCCTTGTCTGCCTCTATTTGCCCCTTTCTATTTGTAGATGTGCTATTATTATTCTTCAAAAGTTACCATGC CAGGGAAATCAAGAAAAGTCATTTTTGTTTACTAACTTTTCATGGTAAATGTATTCTTTGGTTAAATACTTATTAATACC TTTTTTGAACTTCTATTGATATAATTGCAGACTGTCCTATTTAATGAAGTTAACATACTGTGCATGTTTGGTTATTTTAT TTTGGTGCTGCCTCTGAAGTTGAAGTTGCATTTTCTTCTGAGACACAATTAGATTAGTGTCTTATATGTTGGTCAGTG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0334600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACGGAGGTTCCGGCACCGGAGGCGCAATTGACCGGCGGAGTAACGGTGGCGCCCAACAAACCCTCCGAACCCACTGC CACTGGATCGAAGCGCCACCGGAGACCCAGCGTCCGATTAGGCGAGATCGGAGACCAACCCAACGATTCCCACCCTCTCC GCCGCACCACCACCACCACCACCACCAAGTCGTCGTGGCGCCTCCCCTTCTCCAACGCCTCAGGTAAACATTCCAAGACT CGACCTCTCACCAACTTGACCGGTTTCGGCGGAACCCTAGAGGGCGACGACGACGACGTCGTTCGCTGGAAACTGAAGGA CTCCAAGAAGAGGGGTTCTTCCTCCTCCGCCGCCGCCAAGAGACCCCGATCGAATTGGGTTGCTTCTTCCCAAATCGAGG GAGAGGATTTCGATGCAGAGAGCCCTGTTCTTCATTCAGCGGAGAATTTGGGTGATGACGACGACGACGATGATGATTAT AGAGCGACGCTGCAGCATTATCATGAGGAGAATGCTAGGGATAATAAGAATGGGAATGGTGGAGGAGTGAGGCATGGAGA AGATTGGATTCGGATTTGGCTCAATGGGCTAGGCTTAGGTAGATATGCTCCAGTTTTTGAAATCCATGAGATTGATGATG AGGTTTTGCACTTGCTAACTCTTGAGGATCTTAAAGATATGGGGATTAATGCTGTTGGATCAAGAAGGAAATTGTACTGT GCAATTCAGAAGCTTGGCAAGGGTTTCTCCTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0334600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTEVPAPEAQLTGGVTVAPNKPSEPTATGSKRHRRPSVRLGEIGDQPNDSHPLRRTTTTTTTKSSWRLPFSNASGKHSKT RPLTNLTGFGGTLEGDDDDVVRWKLKDSKKRGSSSSAAAKRPRSNWVASSQIEGEDFDAESPVLHSAENLGDDDDDDDDY RATLQHYHEENARDNKNGNGGGVRHGEDWIRIWLNGLGLGRYAPVFEIHEIDDEVLHLLTLEDLKDMGINAVGSRRKLYC AIQKLGKGFS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 141 141 - –
PANTHER
PTHR10627
2 162 161 4.9E-74 –
PANTHER
PTHR10627:SF57
2 162 161 4.9E-74 –
MobiDBLite
mobidb-lite
50 87 38 - –
MobiDBLite
mobidb-lite
95 114 20 - –
MobiDBLite
mobidb-lite
115 131 17 - –
PANTHER
PTHR10627
173 250 78 4.9E-74 –
PANTHER
PTHR10627:SF57
173 250 78 4.9E-74 –
SMART
SM00454
182 248 67 5.1E-14
IPR001660
SUPERFAMILY
SSF47769
187 245 59 1.75E-16
IPR013761
Pfam
PF00536
189 245 57 1.1E-13
IPR001660
Gene3D
G3DSA:1.10.150.50
190 247 58 7.3E-18
IPR013761
ProSiteProfiles
PS50105
193 248 56 14.403
IPR001660
CDD
cd09487
193 244 52 1.59477E-18 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0334600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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